RNA id: XM_021623884.2


Basic Information

Item Value
RNA id XM_021623884.2
length 7020
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110537667
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22030063 ~ 22069249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACATGTATGACTAGAAGATTTGAGGATGCGCTGCGAAAATAGTGGGCGAAGATGGCGTCGGGAAAGACGGGaggcaacaacagcagcagcctcGGAAAAGGTTTGAATGGAAGACGTTCGTCAAAACATAAAGAGGGGCCAATAGTGATGGACACCAAGGCCGTGTTTACTGccctgtacagtgtgtgtgaggaGAATGCTACGTTCTTCTCTGAGGGGGCCCAGGGGGGCGCGGCACAGCGACTGGTGGACACCATGACCCTGATCCAGGAGCACGCCAGCAGCCTGGAACCTGTCATCTCCGGCTTTGCTGCTGTCTACCACCACTTTGACTTTGACCCACACATACCAGCCAACGGATACCGCTCTCTAGTCAAGGTGGTGCGCTGCTGCATTCTCCACATCATCCACAAGGGGCGCTACATCTCCACCAACCGACGCAGCATCTTCTTTCGGACGGCCCACAACGCAGGGGAGATGGAGGCCTACTGCTCGGCCCTATGTCAGCTGAGAGCCCTGCTCTACCTGGCCCAGCGACTGCTGCACGACAACAGCCACGGGAACCTCTTCTTCCACGAGGAGAGCGGCCTCAGCCAGAGCTTTGTCCGGGAGTACTCCTCCATGCACAAGGGCTGCTTCTACGGACGCTGCCTTGGATTCCAGTTCACTCCAGCCATCCGTCCCTGTCTGCAGACCATAGCCATCGGCCTGGTGGCCTTTGGAGAGAACTACAGGCGCAACCAGTCAGGCATTGgTGTAGCAGCCAGCTCCTTCTTTACCTCAGGGAAGTACGCCATTGACCCGGAGCTAAGGGGGGCGGAGTTTGAACGCATCACTCAGAACCTGGACGTCCACTTCTGGAAGGCCTTCTGGAACATCACAGAGACTGAGATTCTATCTAGTCTAGCCAGTATGACGTCCACCCAGGTGAAGGTGAACCGTGCCCTCTCGGTGCCCCCTGTGCCCTTTGACCTCCCGCTGGTGGCCAATCCGCACCTCACTGTCACCATAGAGGCCCCGTCAGCCCACACCGGCCCTGGCCCCTTGCAGATGAGGCTGATCTCCTACGAGCTGAGGGAGGGGCAGgacagtgaGGCGTTGCTGTCCCTGTCTCGTTCTGAGGGGGGTCCGATCTCCCTGTCCCTGGGAATGAAGACCAAGCAGAGCCCCCCTTCTCGCTGGCTCCTGGTTCACTACCACGGAGGAGGCTTTGTGGCCCAGACCTCCAAGTCTCACGAGCCGTACCTGAAGAGCTGGTCTCAGGACCTGGGTGTGCCCATCCTGTCTGTGGACTACTCTCTGGCCCCTGATGCCCCCTTCCCCAGGGCCCTGGAGGACTGCTTTTACGCCTACTGCTGGGCCATCAAGAACCACCACCTGCTGGGTTGGACGGGGGAGAATGTCTGTCTGGCCGGTGACAGTGCCGGTGGTAACCTGTGTATTACAACATCGATGCGCGCTGCCTCTCATGGTGTGCGAATGCCTGATGGCATCGTAGCTGCCTACCCTGCCATCCTGCTCACCGCCTACGCCTCGCCCTCCCGCCTGCTCACCCTCTTTGACCCCCTACTGCCCCTCAGTGTGCTCTCCAGGTGTCTCAGCGCCTACGCAGgtgaGGAGCCCCAGGCAGAGAAGCAGGTGGAGAAGGTGAGCACTCTGAGCATGGTGAGGAGAGACACGGCCCTGCTGCTCAGAGACTTCAAACAGGGAGCTTCCAACTGGATCCACTCCCTACTGGACCCCAACAGAGCCGCTGCCACGGCatcaacagacACGTCTTCGTCAGTGAGGAAGAGTGTGTCTGAGGCATCCATCAGCTCACACCACTCGAACCCCCCTGAGCATCCCTCGGACTTCTCCCTTAGGAGAGAGTCTCTGAAGAGCCTCGTAGGCCACGCCAACAATGCCATCGCCACCCCCGCTGCTGCCCCCACCACACCTGCCCACAATGCAATGGTGTTCCCCGAAACCACGCCTGACAACGTGAGCTTCTTCCTCTCCAAAGAGGTGGTGTCCATGTCGGATGCTCTGTCTTCTGTTGCCATAGCGCCCCCTGAGGGGGAGGAGGGCGTGGTGCTGGAGCACCCTCGGGAGTTCCCCCTGGGCTTCGAACCGCTGCGTTCTGAGCGGCTGGCTGAGATGAAGCTGGCCACCTCGCCTGTCGTCAGGAACCCCTACATGTCTCCTCTACTGGCCCCCGACAGCATGCTGAGAGGACTACCCCCCATACACCtagtgGCCTGTGCATTAGACCCCATGCTGGATGACTCTGTGATGTTTGCCAAGCGCCTGAGGAACGTAGATCAGCCAGTCACCCTGTGTGTGGTGGACGACCTTCCCCATGGCTTTCTCAGCCTATCACAGCTCTCCAGGGAGACTAGGGAAGCGGCTAACGTTTGCGTCAACCGAATCAGGGACGTCTTTGACCAGAAGGACTCGCTCCAGGAGCCGCGCATGCACCGCAAGCTGGAAAGGACCAATCACCGTGCTTCCTCTGTCGCCACGGGTGACCCAGAGAAACTCTTTGCAACACCCATTCAGGAGGAGGAGCTGCTGGTTGCCAGGGGAGGGGCTCTAGTTCCAGATGGGGAGGGGCTAGTTGGTGTGGCAGCACAGAACAACAATAATGTTGTGGGATAAAGACATAATCAGGGGTTTGCTAGATGAAGAGTGCTGTTTGTCAAAGGATTTAAAAGAGGGGGGAATTTGGGCCATATGAAGCCTGGGAGAGGATAAGCGaatagagtgaaggaaaaacagcagGAGGAGGATATGCAGAAGGTGTTGGTAGCGTGCCCAGTTTTGGAGAGACAGAATGAAGCACCCATGGATAGAGAGGACAGCAAGTACTAAATGCAACTTCTTCAGTTTTCAAACTTTCAATTGCTGTTTAGCACCATGCACAGTGACAtgttgaccacacacacactaaaccatTTTGCCTTTTGGGCTGCTGCATTGTGCTCGGTGTAGAACTGTGAGTTTGGAGCCAGGACATTATGAAACAGCACAGAGCGTTGGGGTGAATAGTCGATCCATCTCCCTATAGAAGACTATTCCAGTCCCTAATCAGATAGTGGTAGACGTGCAATGAGCTCCTACATAGTGCCATCACAACTTAATGGCCACTTGTCTTTTAGGGAGCCACTCTAAATCAAGCTTAATAACTGTAGAACTCTGAGGTCTGTTAAACTAGTTGGTTGTGAGTACTGCCGCTGTTCGGTCACTTACTCTGCTGATTGGCCCATCAATAGGACGCTGCAGTGCTAAAAACAACAAACTTAGAAACTGGAAGGATTTCGTAGTACCTTGAAATTCCACATAAATTGTTATCCATAATTGATCGTATTATGCCATAGTATTccttgttgtttttatttattgtgtgtgtgtactcgtaTTGTATTTAAAAAATCCTGGATTATAGTTTTCCCTATTTGTTCAAGGCTTTTAAGAGCATATTTCCTAGCTGTGTAGTGCCATACTCTATGGCTGCTCATTCCTAGttgttcaaagtagccaaatGTTAACCGCTATCACTCTCACTGTAGTGACTAGTGGTCAGTTAGCCGTTACCCACCCAACCAGTCACCTCATAGTGAGATGTGGCTGAGGGTTGATATTATGAGGCCAATATAATCTCTATATGCTGGtctgtcttttatactgatataTTATAACTAGCCAATCATAAATAGCTAATGCAATATTATAGCTGCATTTTCATTGATCAGTGCAATCAACAGGATTCAGTGGAGCCATGATGATATTGTGTTGGATTTAAGTCACTGTTGTGGGAGCAAAGCATCAAGTCAGTCATTTTTGATTTGATCATTTTTATTAACGCCAAGTATTACGTCTTATGATTTTAAGTCTCTTGTGCTCAGCCTTTGTTGCcatctaaaataaatcacttagcTGTCTATAGACTGACTGCCTTTAGAAGCAATGTTTTTTAAAAGACTGGAAATCCTTTCTCTATTTGCGCAGTGAATAACTTCAATAAGAAAGCCTGAAGCAGACAGATGCACGGCCCATCTCTTCATACTATCTGTACATCACTGCACTGACTGCCAAAAATGCAGCCCTCTATCCCAGGATGCAGTGCATTACACTGCCACAGCCCTTGAGCCAGGGGACGTCCTGCTTGCTGAACCATTTCTGCATCTCTGTCCAAATCAGAGGATCCATTCTGCTCCAACAGCCTGTACCGAGTGAGCAGGAGAATCTAGAACAAGCATGATAGTGAGCTCATACTCACTGAACAGGTGACTTCTCTAGTTAGAGAATGTGTCTTTCTATGCACCTTTAGGACATTCTACAGTGGCTGACTGACAATCTGTGATTCTCTGTCCTATTTGCTGCCAGTGCTTATTGCAGTGTTTTGAGGCAGGCTGGTAGAAATTAAAAGAGCTGTTAAGTGATTCCCTTGAATACCTTCACGGTTATCTTGTTTTTAGAAGTATTGTGTTTAATGGTTACTGGTTATGATAATTTCACACTTTTTCTTTGTAAGTTAAGTGTAAATGTTTGTTTCGTGTGTCAGTGTTTAGTGCCCATGTGCGTGTCTGGTAAGTGGATTCTGTATGCGTCTATCAATGACTCTTAACATTGCACGTGTTTGTCAGTGCTTGTGTGGGTGGAACATCTACCATCTTTGAAACCATGATTGTGTGTTTTTAATTGCAGCAGTAAAGCAGCACGTGGGTGTATGGGGCCATGAGTTGCGACCCAAGCCCCTGAATCTCATGAGTGTTGTACAGTACACTATTGTTTAGCCAAGCAGGACTTCTGAGATCCCATTTAACACTATGCATTCTGTCAGCCATCGCTATGATGCATTACAAGGTCCTTGATTAATAAAGTTATCATTGTGTTCTAGCAACATAACTGATCATGCATTTTGAGATTTAGTAGCCTGGCGTCTCCATTGCCAGAGTAGATATCATAACCCCACACCCGACCAGCACCACTCCAGGCCCTATGGGATGCCCTGAATGGCTCCTATAGACTACTAGCGCCCCCAATGAGCAAGGCTAGTACAGCCCTCTGATCTATCTATGGAACTGTGTAATGGTGGGTTAGAACCGCTTGGTGGTTTAGGACCAAATCCTTTTTGGGTTGTGGCTTTAGTGTTTGTTTCTGGTCCTGGTCAGAAACATTGCTCTTGTTTTCTTGGTGGGTCACAAATTATTTTATATGGGTCACAGTGCAACAACTTTGGGAACCACTGCAATAAGCTGCTCTTTTAATGGCTACCAATCCTTCACCTGATCTGAGAGGAGGGCAACGCACCGGAGAAATCCATGACATGGTGCTAGTCCATCTGCCATCTTGTTTTCACCTTCCTAGTCCTATTGGTTGTCAGGAAAGGGAAGGAGCCATTTGAGAGCATTGGAACATGGTCTCCCTCCATATGTGGGCCAACCACTGTTTCTATGCCTCTAGAGGATTGATGCATCATGTATTTGTGTGCATGTtgctgtgttcaaaacaactTGGATCTTGGAAAGTGTCAAATCaggacgtcagtgatcttcacgTCGCAAAGTCTGAGTTCTAGAACGAGGCCCACGATTCCGAGTTGGAGGAAGGTTGTTGGAGATCGCTTTTTTCCCCTCGAGTTCCCAGTTTTGAATGCTCGGAAGTCAGAGAATTTCCCGAGTTCCTGGTTGTTTTGGGCAGTATGCACCTTTTTTGGGTCTTGAAATGCAAATTGGCTGAAGTAGTGTTGAGAAATGTAATGTGGCTTTGTGTGTTTTGATTGTACATTGTACTTCAACCATTTCCCTCATGTATAGGCTATTTACACTGGATTCAACATCTCTTAGCCTAGAGCTAAAGATGTCCCGGGCTAACATAAAACATGCAGTGTGAAAAGCCTATTAGTCAACATATCTAAAAGCTGTTTAGGTCAAGTACCCGGTCGAATGTTACCCTACACACAGCTATGTAGTAACACACCAGCATCCTTTCGTAGATTTTATCTCCTGTCTTTGGTGAGCCATGTCTGTTTTTCGATCTAAAATTCGGTCTTGGTTGAAATGCTTTCGATCAACCCTGAGGCTAGTTATGCAAGGCTATTTTCCATTTCcatttggtcatttagcagacggtaTTCCACTTAGTTTGCCTAGAGCATTGTGGAATCTACACAATCTGGTCACTTGAGAATCATTTCCTCGAATAGAAATGACCCCGACTGCCTGCTTCGCAGAATGTGTTCTTTATAGgaaatgtttttctttatttttttgtccCACTTAGACCAGGGGTTCTCAATGGGTTCTGTAGAGGTACTGCCGGGCGTCCGCAGCCAGACACACATTTCACcaattatatatttttcaactCAGCTATTCCAATGTGCAATATGTCGATTGCAGGATATTACCTTTAAAGCAGCAATTCAGTGGAGCCATGAGAACTGCAACATTTTCACTCCGATGCCAACAGGCGGGCCTTTTTAATGTTCTTTCCCCTGGCCCGAGACTTGGTTCGTTCAGCCATAAACTGCAGAAGTCATAACTCCTTGTAGACTATTTTTATCACACGAGTTATGATTATGAGGGGGATCCTGATGAATTTGCGCACATAAAATGGGTCCCCTCCCCAGACCCAAAACGTTTGCGAACCCCTGACTTGCACTTTATCACACAAGTGGTATTGTCTATGTTAGATTAAGGCAGAACCAAAGATTGCATCTAGTTTTATATGAAACTTGCTGTCACTGTCATTGACATTAGTAACAGACATTTTGGCCTGGGTTGATGTCCTGGTGGCTGTATCATTGAGATCTACATAGTAGTTCTCTGTTTGCACTTTATGGAACAAGATGCTGTTGTTAATATAGAGCTATTGAAGATAACTATATTTTATTAAAGCCTACACAAAGCCATAGACTGGAAGTAAATGTTTTGAAGTTTACTTGATTTTTATTTTACAACACCACAAGTGCAATCATGTGAATAAAAAAAGATGAATctatattacaaaaataaaatgcatttccTGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140940 lncRNA upstream 5730 22019275 ~ 22024333 (+) True arhgef1b
TU140939 lncRNA upstream 5789 22019275 ~ 22024274 (+) False arhgef1b
TU140961 lncRNA upstream 11248 22015130 ~ 22018815 (+) False G122030
TU141027 lncRNA downstream 32766 22102015 ~ 22102282 (+) True G122077
TU141003 lncRNA downstream 103463 22172712 ~ 22173051 (+) True G122065
TU141087 lncRNA downstream 245196 22314445 ~ 22316058 (+) True G122135
TU141180 lncRNA downstream 304743 22373992 ~ 22374650 (+) True G122225
TU141198 lncRNA downstream 342612 22411861 ~ 22412408 (+) True G122242
XM_021624248.2 mRNA upstream 647 22024418 ~ 22029416 (+) True LOC110537828
XM_036941866.1 mRNA upstream 5726 21967678 ~ 22024337 (+) False arhgef1b
XM_036942152.1 mRNA downstream 8741 22077990 ~ 22115281 (+) False LOC110537757
XM_036942162.1 mRNA downstream 8742 22077991 ~ 22115281 (+) True LOC110537757
XM_021624236.2 mRNA downstream 60847 22130096 ~ 22132085 (+) True LOC110537821
XM_036942247.1 mRNA downstream 79694 22148943 ~ 22150744 (+) True LOC110537790
XM_036961779.1 mRNA downstream 85511 22154760 ~ 22182084 (+) True LOC110537812
TU140958 other upstream 11248 22016662 ~ 22018815 (+) False G122030
TU140829 other upstream 204969 21821214 ~ 21825094 (+) True LOC110537735
TU140532 other upstream 443962 21585421 ~ 21586101 (+) True G121677
TU140444 other upstream 483029 21542097 ~ 21547034 (+) True LOC118938333
TU139028 other upstream 1014172 20991754 ~ 21015891 (+) True LOC110509768
TU141079 other downstream 273278 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other downstream 273278 22342527 ~ 22346505 (+) True LOC110537939
TU141081 other downstream 279334 22348583 ~ 22349936 (+) True apoc4
TU141439 other downstream 741518 22810767 ~ 22811263 (+) True G122459
TU143220 other downstream 1755444 23824693 ~ 23825502 (+) True G123980

Expression Profile