RNA id: XM_021624276.2



Basic Information


Item Value
RNA id XM_021624276.2
length 1012
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110537847
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22114700 ~ 22118083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCCACACAGACTGAGATAACTGATGCACCGGCAATGTCAAAGTTGTCACGTTATTAAGCGACCTCGGGGATGTATTAATGATCACATAAACCTAATTTAAAACGAGAATAACGGAAGATAACCTTCGTTAGAAACATCGGTTTACATTTTTGAAGACCGGCTTGATTCCTTTTTTCTTTATAGCCTCTTGTAGGCTTCGGAACTCGACAAGATGCGCGTCAACATTCAGATGTTGATATCCCATGGCCGGGTGGCCCGTAAAATGGGTCTCGGTCCAGAGTCGCGAATAAACATGCTTCGGAACATTCTTACCGGCCTCGTTCGACACGAGAGGATAGAGACCACCCGAGGCAGAGCAGACGAAGTTCGATTTTATGCTGAAAAGTTGATTGACTATGCCAAGAAGGGAGACACTGACGAGAAAGCGATGAAAATGGCAAATTTCTGGCTCACAGAAAAGGATCTGATCCCAAAGCTCTTCAAGGTCCTGGCTCCCAGGTTTGAGACCCAGCCCAAAGCCTACACCCGCATGGCCCGCATTCCCAACAGGGAGAACCTGGACAAGGCTGCTATGGCCGTGCTTGAGTATAAAGGCAACCCGTTCCCACCTCTCCAGACCGCCAAACGAGACAATGAACTCACACTAATCAACCAGCTCCTCAAAGGCTACAGAGAACAGCGGGCACAGCAGGCAGCAGCCAAGGTTGAGGCATAATGCAACCAGCCACACTGACATTACATGTATTACAGTTTTTAGATGTCTGGCTACAGTATTTGACTTTCTGTGGACTCcacaaaataaatgtgattgtATGACAATGTTACGCGTTCTGTTTATGGCACTAATGTGAATTTAAGATGTGCTTAAATCAAACAGGTTTGATATGCTGTTATTATTCCCTCTACCGGTTCAGAAACATGTCCCCCAAACGTTTCATTATCATCATGGTTGATGTCCTGTTTTTAATCTCTCTACTGATTCAGAATAAACATCAGGCAGTGGCAAATAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141988 lncRNA downstream 11249 22103168 ~ 22104400 (-) True G122909
TU141927 lncRNA downstream 59512 22051423 ~ 22056137 (-) True G122860
TU141892 lncRNA downstream 86077 21965725 ~ 22029572 (-) True G122833
TU141916 lncRNA downstream 100362 22014720 ~ 22015287 (-) True G122849
TU141889 lncRNA downstream 101147 22012926 ~ 22014502 (-) True G122830
TU142006 lncRNA upstream 3813 22121774 ~ 22122035 (-) False LOC110537842
TU142003 lncRNA upstream 31966 22149927 ~ 22155935 (-) True G122914
TU142004 lncRNA upstream 32311 22150272 ~ 22156271 (-) True G122915
TU141968 lncRNA upstream 62030 22179991 ~ 22180399 (-) True G122891
TU141966 lncRNA upstream 62795 22180756 ~ 22182109 (-) True LOC110537752
XM_036941837.1 mRNA downstream 394014 21713005 ~ 21721635 (-) False LOC110537643
XM_036941829.1 mRNA downstream 394014 21713006 ~ 21721635 (-) True LOC110537643
XM_021623793.2 mRNA downstream 468163 21645294 ~ 21647486 (-) True cnfn
LOC110534450 mRNA downstream 482004 21631390 ~ 21633645 (-) True LOC110534450
XM_036961756.1 mRNA downstream 519114 21595236 ~ 21596535 (-) True LOC118944069
LOC110537842 mRNA upstream 2618 22120579 ~ 22127548 (-) False LOC110537842
XR_005035698.1 mRNA upstream 54731 22172692 ~ 22175353 (-) False LOC110537803
XM_036942258.1 mRNA upstream 54943 22172904 ~ 22175353 (-) True LOC110537803
XM_021624116.2 mRNA upstream 63884 22181845 ~ 22198840 (-) False LOC110537752
XM_036942350.1 mRNA upstream 111839 22229800 ~ 22234761 (-) False LOC110537877
TU141887 other downstream 87932 22026299 ~ 22027717 (-) True G122829
TU141817 other downstream 259748 21851433 ~ 21855901 (-) False G122761
TU141778 other downstream 303217 21796507 ~ 21812432 (-) True G122733
TU140631 other downstream 568612 21490267 ~ 21547037 (-) False G121756
TU140595 other downstream 652619 21462693 ~ 21463030 (-) True G121738
TU142002 other upstream 2619 22120580 ~ 22157534 (-) False LOC110537842
TU141995 other upstream 11653 22129614 ~ 22155729 (-) False LOC110537842
TU141996 other upstream 11653 22129614 ~ 22157534 (-) False LOC110537842
TU141994 other upstream 31556 22149517 ~ 22155729 (-) True LOC110537842
TU142062 other upstream 258192 22376153 ~ 22378160 (-) True G122972

Expression Profile