RNA id: XM_036942258.1


Basic Information

Item Value
RNA id XM_036942258.1
length 925
RNA type mRNA
GC content 0.56
exon number 5
gene id LOC110537803
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22172692 ~ 22175353 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGGCAGGTTGGAGGGATATCAGTTGAGATAAATGTATAAATGTAGAGAATCGCAGAGTGCACATGTCCAGTCTGGTGAATGAAGACTTGTCTCAGCAGCACGATGATTGGCCTGATTGTACTCACACTCCTGGGGGCTGCAGcGGCAGCTCCTATGGATGACAGGATCGTGGGGGGTTATGAGTGTGAGGCTCACTCCCAGCCCTGGCAAGCCTCTCTGAACATCGGCTACCACTTCTGTGGCGGCTCCCTCATTAATGACCAGTGGATCATCTCTGCCGCCCACTGCTGGATGAAtccttGGAGTCAGCTTGCTATCCTGGGTGACCACCACATCTGGGAGCACGAGGGAACGGAGCAGTACATGTCTGTGGACGCCATCTACTGGCACCAGAGCTATGACTACCAGACCCTGGACCACGACATTATGCTGTTGAAGCTGGCCCACCCTGTCACTCTCAACAAGTTTGTCAAGCCCATCGCCCTGCCCACAGCCTGCCCCAAGGCCGGGGACATGTGTGTGGTGTCTGGATGGGGAAACATCTACACTGACTCTGtgtTCAACCCATTTAACCTGCAGTGTGTGGACATCCCCATCCTGTCTAAGAAGGCCTGTGAGGAGTCCTACCCTGGCCAGATTACTGATACCATGGTGTGTGCCGGATACCTGGAGGGAGGCAAGGACGCCTGTCAGggtGACTCCGGCGGTCCCCTGGTGTGTAACGGAGAGCTGCATGGCATCGTGTCCTGGGGTGTTGGCTGTGCCCAGCCCAACTATCCTGGTGTCTACACCAAGGTCTGTGCCCTGCTGCCCTGGATCACTGAGATCATCACCAACTACTAGCCTTTACCCTCCACaccagactagagagagagagcgagagagaaagagagagagagagagagagagggagagggagaag

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142004 lncRNA downstream 16633 22150272 ~ 22156271 (-) True G122915
TU142003 lncRNA downstream 16969 22149927 ~ 22155935 (-) True G122914
TU142006 lncRNA downstream 50869 22121774 ~ 22122035 (-) False LOC110537842
TU141951 lncRNA downstream 54963 22114700 ~ 22117941 (-) True LOC110537847
TU141946 lncRNA downstream 55546 22114700 ~ 22117358 (-) False LOC110537847
TU141968 lncRNA upstream 4638 22179991 ~ 22180399 (-) True G122891
TU141966 lncRNA upstream 5403 22180756 ~ 22182109 (-) True LOC110537752
TU142063 lncRNA upstream 167258 22342611 ~ 22346628 (-) True G122973
TU142057 lncRNA upstream 179232 22354585 ~ 22356072 (-) True G122967
TU142139 lncRNA upstream 208793 22384146 ~ 22384796 (-) True G123044
LOC110537842 mRNA downstream 45356 22120579 ~ 22127548 (-) False LOC110537842
XM_021624284.2 mRNA downstream 54821 22115839 ~ 22118083 (-) False LOC110537847
XM_021624276.2 mRNA downstream 54943 22115649 ~ 22117961 (-) False LOC110537847
XM_036941837.1 mRNA downstream 451269 21713005 ~ 21721635 (-) False LOC110537643
XM_021624116.2 mRNA upstream 6492 22181845 ~ 22198840 (-) False LOC110537752
XM_036942350.1 mRNA upstream 54447 22229800 ~ 22234761 (-) False LOC110537877
XM_021624323.2 mRNA upstream 54447 22229800 ~ 22234924 (-) True LOC110537877
XM_021624351.2 mRNA upstream 61475 22236828 ~ 22252954 (-) False LOC110537882
XM_021624336.2 mRNA upstream 61475 22236828 ~ 22253022 (-) False LOC110537882
TU142002 other downstream 15370 22120580 ~ 22157534 (-) False LOC110537842
TU141996 other downstream 15370 22129614 ~ 22157534 (-) False LOC110537842
TU141995 other downstream 17175 22129614 ~ 22155729 (-) False LOC110537842
TU141994 other downstream 17175 22149517 ~ 22155729 (-) True LOC110537842
TU141887 other downstream 145187 22026299 ~ 22027717 (-) True G122829
TU142062 other upstream 200800 22376153 ~ 22378160 (-) True G122972
TU142449 other upstream 829633 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 1010287 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 1104826 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 1728486 23903839 ~ 23904677 (-) True G124840

Expression Profile