RNA id: XM_021624116.2


Basic Information

Item Value
RNA id XM_021624116.2
length 3449
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110537752
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22180756 ~ 22198840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAGTAACacaaaacaaagagagagagagagagagggaccagcCAGAGTCAGActgagacataaaaaaaaaattccGTTGTGCTGCAAAGAGAGCCTGGGGTCTATATCTGAGACACCATGTTGTAGATGAAATCAGAGAGCTACGCCACTTAGGGGGAGAGATAGTGCCTGGCATGAGAGTGTAAAATGTTGCCCAAGAAGGGGTGGAGAGAACAGGGCAGGAGAGGTGTTGAGATTGTTTAGGAAGGGTGAGTGGTTATTTGTCTGTCTTGTTCTgccctcccttgctctctctctttcagggtTTTCTCTTTACACTTACTCTTTACAAAATGAACTGGAAAGACTGTTCCTAAAAAAATCTTGGCTACTTCTGGAAAACTGACCAAAGAAATTGAGGATTTATGAATTGAGGACTTGATGAATGTAGGcttgaaaacaaacatttttgaGAGATTGTTTGTAAACAGTTTTGAGAGattatttgtaaacatttttgaGAGATTATTTGTAAACAGTTTTGAGAGATTATTTGTAAACAGTTTTGAGAGATTATTTGTTTGCGCTTTTCTGGACAAGACGTTTCCCCTCCACTCTTTCTAAACCTCAGCAGCTGTCTCCATTCCTGTTGGACTATGGTATATTCTGGCGCTCTGCCCCTATCTGGGTTACCTGATTTCATTGGATTATTCTTTGGATTACTGAGGAACACTGGTGAAGATATATTGTATAAAATGTGCTCTTTTCAACCAAAGCTGTCAACCATAAAGATACAATGACAACATTTACTAAGCTGTCCATGCCATACGTGCCAGACATCTAGACCACTCCCTCATTCAACTGTCACAGATAGGGCTGCCAGACACAAACCGCCAGGGTGCACTGAATTGATCCCACTCGGACTAACACACCACAACCAGGAATCCCTCCTCAGGACAATGGCCACAGGAGGGAACGGGCTAGGATCTGACCGGAGCCTGAAATCCACCTCCCAGCCGTCGAGTGCCTCTGACCAGCGGCAGGTGGACAAGGCCCTAAAAAGGCTGGAGAAGCTGCACCAGCTGTGTACCAACCCCAGGCTGGGCCTGAGGAACAGCCCCCCGTACCTCCCCGATGTGGTCTCAGAGACAACCACGCTGCTCACCCAGGTGTGGGAGCCGTACAGGGGTCCTGCAGCTGGGGGGCAGGCCCCCCGGGGGGACGAGGGGGAGTACCTGAGGATCCATGCAAGACACCTGCTGGATAAGACTAACCGGGCCGTGCTGCTGTTTAAAGAGGGGCGTGATAAGATGTTCGAGGAGATGTCCAGCTACAGGAGAAACTTGACCAAGCTGTCCCTGCTCTTCAATCACATGCTCTGGGAGCTAAGGGCCATGTTTCCAGAGGGAAGCTTTCAAGGCAACACCTTTAGGCTGACTAAGACAGAGGCTGGAGAGTTCTGGAGGCGAGAATTTGGAAACAAGTGTATTGTGCAGTGGAGCAGTTTTAAGCAGCATCTCCGTAGGGTCCATGGCTTTGAAGAGGGGATGGAGTCCATGGCTCTAAAGTCCACTGTAGATCTCACCTGTAATGACCACATCTCAGTGTTCGAGTTTGACATCTTCACCAGGCTATTCCAGCCCTGGAGGTCTCTTCTGAGGAACTGGAACCAGTTGGCAGTGACCCACCCCGGCTACATGGCCTTCCTCACCTACGACCAGGTCAAAGCCCGCCTCCAAAACTACCTGCACCAGCCCGGGAGCTACATCTTCCGTCTGAGCTGCACTCGGATGGGCCAGTGGGCCATTGGTCATGTGACTGGTGATGGCGGCATCGTACAGACGATCCCCCAGAATACACCTCTCTACCAGGCCCTCATCCAGGGCTTCAGGGAGGGCTGCTATCTTTACCCTGACGGACGTGATGTGAACCCAGACCTCACCAGTCTGTGTGAACCAGCACAGAGAAGCAGGGTCAAAGTCACAGAGGACGAGTATGAGATGTACTGTGAGATGGGTAGTGCCTTCCAGCTGTGTAAGATctgtacagagagagacaaggacaCACGCATCCAGCCCTGCGGACACCTGCTGTGCCAACCCTGCCTCACAGGATGGCAGAAGTCGGATGGACACACCTGCCCATACTGTCGCTGTGACATCAGAGGGACAGAGTCCATCCTGGTGGAGCCTTACCTGTCTGTCagcgaggaagaggaagatgaagatgacCTGGAGGATGTACAGCTAGTCATGAAAAACCTGGCCTATATGAAGAggaTGTCGTCTGAAGAGTACCAGTTCCCCAGCTCTCGCCTcgttccacccctccctcccaaaCACAGCACCTTCTCCCACTGCCCTTCCCCACAAGCCCCCTTACGGCCCTCCGATATACTGGCCGAAAACTCCCACTCTAACTCGAGTTCTGCTCACAGTGACACCCCCTCAGACAGAGCGCTCACACACACCACTGCCAGCACTAACAGTGAGGATTCTGTCTCAAAGCCAAACCTCCCCTCCTGTTCCGTCTCCTCCCAGTCCTGTGGAGAGGGTGGAGCAGCCTGGGAAGGGGCTTCAGATTCAGTGAAACAGAAGAAGAGGTATAAAGAAAGGAGTGAAAGGATGTCAGAGCTCGGGTACAgccagagagagcgggagagaaccATGTCCTCCTGACGCTGGGAGAAAAGATAAGCACAACATCTCTGACTCAAGAATGGATGGATAATAGGAATAAGAAAGGTTGATTTCCACTGTTCCTGATAAACAGCCATTGTTAATCTTATGTACCTTATGAATATGTATCTTATGTATGCCTTAATATGGAGGGAGAATGCCCTGTTGATAAACTAATAATGACATCAAAGTGAATGGAGAAGGACAGACTGATGGAGCAACTCACTGATGCCCTCTGCTGCACAGCAAACAGAGTAAGCTGCTGCACAGCAAACAGAGTAAGCTGCTGCACAGTTCCAAAAACAAGTAAAATTATTTCATTGCTTGATGTGTGTATGTAGGGCATTGAAAATATGCTACCTCCTAATTTACCCCATACTTAAAACATATTGTCCAGGATGTATGACTAGTACGGTATATAGCCTGCATACTATAGTTGTATGTTAATATGATCAAACATGAAACCCAAATAAAACTTTTGCACCTCCATCATACCAATACAAATGCACATAGTAATGAAAGTGTAGTTCctaagacagacagacggaaGATAGTGTAACTTCAGGCTTTATTGTGTTTGACATGCTTACACTCTGTGCTGATTCCACTTTAGTATcaaactaggaggagagagagagaaagagagagagaggaagagtttggaggagtggaggtctgagagacagggaggaagagttTGGAGGAGTGGAGGTCTGAGAGACAAGGAGGAAAGCAGCTAGTGTTGTTACATGTTGGCCTTCATGGTCTCATCGATCCAGGGGAGGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141968 lncRNA downstream 1446 22179991 ~ 22180399 (-) True G122891
TU142004 lncRNA downstream 25574 22150272 ~ 22156271 (-) True G122915
TU142003 lncRNA downstream 25910 22149927 ~ 22155935 (-) True G122914
TU142006 lncRNA downstream 59810 22121774 ~ 22122035 (-) False LOC110537842
TU141951 lncRNA downstream 63904 22114700 ~ 22117941 (-) True LOC110537847
TU142063 lncRNA upstream 143771 22342611 ~ 22346628 (-) True G122973
TU142057 lncRNA upstream 155745 22354585 ~ 22356072 (-) True G122967
TU142139 lncRNA upstream 185306 22384146 ~ 22384796 (-) True G123044
TU142184 lncRNA upstream 274614 22473454 ~ 22474204 (-) True G123088
TU142187 lncRNA upstream 283030 22481870 ~ 22575322 (-) True G123090
XR_005035698.1 mRNA downstream 6492 22172692 ~ 22175353 (-) False LOC110537803
XM_036942258.1 mRNA downstream 6492 22172904 ~ 22175353 (-) True LOC110537803
LOC110537842 mRNA downstream 54297 22120579 ~ 22127548 (-) False LOC110537842
XM_021624284.2 mRNA downstream 63762 22115839 ~ 22118083 (-) False LOC110537847
XM_021624276.2 mRNA downstream 63884 22115649 ~ 22117961 (-) False LOC110537847
XM_036942350.1 mRNA upstream 30960 22229800 ~ 22234761 (-) False LOC110537877
XM_021624323.2 mRNA upstream 30960 22229800 ~ 22234924 (-) True LOC110537877
XM_021624351.2 mRNA upstream 37988 22236828 ~ 22252954 (-) False LOC110537882
XM_021624336.2 mRNA upstream 37988 22236828 ~ 22253022 (-) False LOC110537882
XM_021624345.2 mRNA upstream 37988 22236828 ~ 22253486 (-) True LOC110537882
TU142002 other downstream 24311 22120580 ~ 22157534 (-) False LOC110537842
TU141996 other downstream 24311 22129614 ~ 22157534 (-) False LOC110537842
TU141995 other downstream 26116 22129614 ~ 22155729 (-) False LOC110537842
TU141994 other downstream 26116 22149517 ~ 22155729 (-) True LOC110537842
TU141887 other downstream 154128 22026299 ~ 22027717 (-) True G122829
TU142062 other upstream 177313 22376153 ~ 22378160 (-) True G122972
TU142449 other upstream 806146 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 986800 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 1081339 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 1704999 23903839 ~ 23904677 (-) True G124840

Expression Profile