RNA id: XM_021624351.2


Basic Information

Item Value
RNA id XM_021624351.2
length 4418
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110537882
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22236828 ~ 22253486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACAATAGAGAGACAAGTCGGTAACCAGGAGTTGAATGCAAATGTGACTGAGTGTGTCAGCTCCACATCTACCACAGCAAAAGAAGAGCACAACAGCAGAACACACATTGTTACTGTCAAAGTGAACAGCACAAAAGGTTGGAACTATTTCCCTCAGTGTTTTGTGTAAGTCAATTTTTTGTGGTTGACAAGCGCACAATTTTTTTGCTTCATAACACACCAAAAAACACCAAGTTGAGAGACTCAGAGAAACATAGGAATAGTCCATGTGAATCAGAAGACAGTACAGGTCTGTTTGAATGTAAAAGACTAAAAGCACTTGAGACTAACAAAGAAACTTACGACCACTCCAGTCCAGGAAAAACGGCGAAAGGGTCTTTGAACATAGAAACAATATTAAAAACTTTACAGGTTGTTGTACACCGAAAAGAGACTTCAGAAAAAGCTATTTTCACCAGGAATAAGACTGCTTCAGGATAATTTACTTTAATGTTTGAATTCTGAAACACTTTCACAAAGGTTTGTTTTTTGAGCGGATATATGATCTGTTTATTCATATAAATGCTAATTTCTCCCTTTTTGGGGAGCGTCGTCTTGTAAATATACAATTTTCATACGCCAGACTCTTCTTTTCAAGAGGGCTGTACGTATAAGTATACATAAAATCTTTAAATTAGAAATCCTGAAAAcaagattttattttttttgtgaactAAATAACACAAGGACAATAGTTCCGCGAGTGGATAAACGAGATCTAAGGAAACATTGGATAGGGGAAAAAGCTTTACACTGTGAGTGACTAAGGAATTGACAGACTGTGAAGGAAAACCTCTAAGCCATGTCTACAGCAAGAACGGAGAACCCAACATCCATAATGGGACTGAACAAGCCCAACGGGCAGTTTAGAGGACCACTCAAGCCAGTTGGACTAACACCAGGATCCCTGGCAACTACCCCACAACCAGATGCCCACCAGAAGGGAGGCAACATTCCCCAGGGCAGTGGGGGCATCCGTTTTGGCGATGACTGGAAGAAGTGCCTGCAGCTTCCACAGAAGGACTGCAGATTTAGAACATCAGATGTGACATCGACCAAGGGGAATGAGTTCGAAGACTACTGCCTGAAGCGGGAGCTACTGATGGGGATCTTTGAGATGGGCTGGGAGAAACCATCTCCTGTACAGgagGAGAGCATCCCCATTGCTCTGTCAGGAAGGGACATCCTTGCCCGGGCTAAGAACGGCACCGGGAAAAGCGGAGCCTACCTCATTCCTCTCCTGGAGAGGATAGACCTGAAGAAGGACCACATACAGGCCATGGTGATGGTTCCTACACGAGAGTTGGCCCTGCAGGTGAGCCAGATCAGCATCCAGGTGAGCAAGCACATGGGTGGGGTCAAGGTCATGGCCACCACGGGAGGCACCAACCTGAGGGACGACATCATGCGCCTGGACGAGACTGTGCATGTGGTGATAGCCACACCAGGCAGGATCCTGGACCTGATAAAGAAGGGCGTGGCCAAAGTGGATAAAGTCCAGATGATGGTGATGGATGAGGCAGACAAGCTGCTGTCTCAGGACTTTGTGGTTCTCATCGAAGACATCATCAGCTTTCTGGCTAAGGGGCGTCAGATCCTACTCTACTCTGCCACCTTCCCCATCAGTGTGCAGAAGTTCATGgCGAAGCACCTTTCAAAGCCCTATGAGATCAACCTGATGGATGAGCTGACACTGAAGGGCATCACCCAGTACTATGCCTACGTCACTGAGAGGCAGAAAGTCCACTGCCTCAACACCCTCTTCTCCAGGCTCCAGATCAACCAGTCCATCATCTTCTGTAACTCCACCCAGCGGGTTGAGCTGCTGGCCAAGAAGATAACCCAGCTGGGCTACTCCTGCTTCTACATCCACGCCAAGATGATGCAGGAGTACAGAAACCGTGTGTTCCATGACTTCAGAAACGGACTCTGCAGGAACTTGGTCTGCACAGATCTGTTCACCAGGGGAATTGACATCCAAGCAGTGAACGTAGTGATCAACTTTGACTTCCCCAAGAATGCTGAGACGTACTTGCATCGCATCGGCAGATCAGGGAGGTTTGGTCACCTGGGTCTGGCCATCAACCTGATCACCTCTGAGGACCGCTTCAACCTGAAGTCCATCGAGGACCAGCTGGTGACCGACATTAAGCCCATCCCCGGCAGCATCGACAAGGGCCTGTACGTGGCGGAATTCCACTCTGCCGACCCAGACGCAGAAGACGAGATCAGAGGCAAGGACGGCGAGTTAAGTGCAGCATAAACGGAGAACAAGAGGCGTCTGGCATTCATCACACCATCCCCTACTGCGCACAGACATTCAGATTAGTTTGACCTAATATAAACAATTCTACAGGATGCATCttccagtttttttattttttattttttgggatAATGTTTACAGCAGTGGTCAGTTTGTTTTGGCACAGATTACATCTGTTTTTTAACCAACATGATATGTACCCAACTTGTCAATAATTTTCTAAGTCTGCCGTTTTTCTGTATGGTCAGTGTATCACTGGTGGCTTCTTATACAGTCACATTTCATCATTTCCTGTTGAAAAGGCCCTCCTCTCTTGTCAGGTTCACTTCCTATAGACTTATTTCTGAGCAGATGACTGTCGAGGAAACCAAACCAAAGCTGAACATGTTGATAGGGGAGTATGGATTTACTCAAAACCAAAAGGACCCCCTCTGCTTTAACGGCTGTTTGGAGAAAGCTATCACGGTGCTATATGGTGGAAATACAAATAGaactacatttttaaaagtttCTTTGTTTTTAAGTGTTAATGTGACTTTACAGTCGTACATGAAAGGCACCTCCATGAATAGTTTTTGTCAGACGCACATGGATGAGTCCAATGATGAGTGTTGATTAGTTGACTTATTGTTTATTTGTTTCGTATTTTACAGCCTCCTTAGTAGGCTATAGCACCAGATAGACCCGTAACTCTGTGGGCAACAGATCCCTTAGACAAGGAGATGATGGCAGTAGAACCTGACATGGATAAGAGCCTGTATCAACAGGGTAAACATTTTATTTAGATgcaccgaccccccccccccccccccccccaacacacacacacaaaaatgattACACATGCTGAAGCCAGTCATCTTATTCTATCGCTCTCTGACTCTTCTGTTCCTCTCACATTCTTCCTCTTAACTCACTCGCGTGCCTTAATCTAACCTCCGCTCAGTGTTTATACTGTACATCTGAAAGGATCTGTCTGTGTGAACCAGAGCTCCAGAAAGTAGCTTGAAAGTTTGGTTCCAAAAAGAGCTTCTCTGGTAATGTTCTCACCAAGTCAGTGCTTGTTTTCTCAGCTTCCCAGAACTCCCCTCTGTTTTTaatgtggagtagttgaaaatgATCTAAGGTAAATTTTGCAAACCCCTCTCCTATTGGTTAATATTAGGATTTAGGGATGAAAACCTGACTAGATCTATCTGTAGCTTGCCAGGAAGCAGGAATGGTCACACAGGGTGGGGGGGACCCTAATCTTTAACACAAGAAGTGATTTGTTACAATACTGGCAATTGTCGTTGAGGAATCGCAGCATTTCAGTAATTTTCTCAATTGTTATGCAATGTATTTTTTTCCTCTTTCGTACATATTAGGTAGTCTGACAGAGCAATGGTTGTGTTGAGGGAAGATTGTGGCAGTACTCTCATTGGCCAAAGTACAGTGTTCTACTTTTAAAAGGATAATATTGCCAAATACAATCTTGTCTTATAGCGACAACCCTAACAGATCCTACAATCTTCAACATTAGAGATGTAGCAGAGGGCTGGCCTCTGCATTGAGTGTAGCAccagcagaacagaacagggacCATTGTAATGCATGTACTGTAAGCCCTTATTTAAACAGCCTACAATACTGAGCACTGTTTCCCCACATCTGGCTCTGGAGTATCCCTGTAAATGCTGGAGTTGATTTAACTTATTCCATTGTCAATTATCCTCAATTGAGGCACTTGAGCACTGAAATGGGACTTATGACTTGAGCATTGTCAAGTGTCGGTGTTAAACGTTATTAATTGGTTAATCTCAGCACACCAGCCGCCCACAGCGATGAGCAATAGCTTTGGGAGGAGGCTATAAATTGGGTAAGTGAAGCAGTATTTGCCAGGGGTACTCCAGGGCCAACTATAAGAAGACTATGGTAGACTTGTTGATTTGAATTTATTTCTATCCAACTCATTTGGTTTGAGTAATGCTCCTGTTGTAGTTGTCTTGTGTTGGCAGAGGTCACCTGCTGAGCTGTAAAGTGGTAGGAGGATGGCTAAGCAAAGTTTATTCTACAGCCAATTGTGTCAATGCCAGCACCTGAAGGAATCAaataaaggcctgattctccatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141966 lncRNA downstream 54719 22180756 ~ 22182109 (-) True LOC110537752
TU141968 lncRNA downstream 56429 22179991 ~ 22180399 (-) True G122891
TU142004 lncRNA downstream 80557 22150272 ~ 22156271 (-) True G122915
TU142003 lncRNA downstream 80893 22149927 ~ 22155935 (-) True G122914
TU142006 lncRNA downstream 114793 22121774 ~ 22122035 (-) False LOC110537842
TU142063 lncRNA upstream 89657 22342611 ~ 22346628 (-) True G122973
TU142057 lncRNA upstream 101631 22354585 ~ 22356072 (-) True G122967
TU142139 lncRNA upstream 131192 22384146 ~ 22384796 (-) True G123044
TU142184 lncRNA upstream 220500 22473454 ~ 22474204 (-) True G123088
TU142187 lncRNA upstream 228916 22481870 ~ 22575322 (-) True G123090
XM_021624323.2 mRNA downstream 1904 22229800 ~ 22234924 (-) True LOC110537877
XM_036942350.1 mRNA downstream 2067 22229800 ~ 22234761 (-) False LOC110537877
XM_021624116.2 mRNA downstream 37988 22181845 ~ 22198840 (-) False LOC110537752
XR_005035698.1 mRNA downstream 61475 22172692 ~ 22175353 (-) False LOC110537803
XM_036942258.1 mRNA downstream 61475 22172904 ~ 22175353 (-) True LOC110537803
XM_021624372.2 mRNA upstream 61497 22314451 ~ 22315983 (-) False LOC110537898
XM_021624364.2 mRNA upstream 61497 22314451 ~ 22316068 (-) True LOC110537898
XM_036942438.1 mRNA upstream 146703 22399657 ~ 22499146 (-) False bcam
XM_036942444.1 mRNA upstream 146703 22399657 ~ 22499146 (-) True bcam
XM_021624488.2 mRNA upstream 272230 22525184 ~ 22531056 (-) True rps19
TU142002 other downstream 79294 22120580 ~ 22157534 (-) False LOC110537842
TU141996 other downstream 79294 22129614 ~ 22157534 (-) False LOC110537842
TU141995 other downstream 81099 22129614 ~ 22155729 (-) False LOC110537842
TU141994 other downstream 81099 22149517 ~ 22155729 (-) True LOC110537842
TU141887 other downstream 209111 22026299 ~ 22027717 (-) True G122829
TU142062 other upstream 123199 22376153 ~ 22378160 (-) True G122972
TU142449 other upstream 752032 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 932686 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 1027225 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 1650885 23903839 ~ 23904677 (-) True G124840

Expression Profile