RNA id: XR_005035710.1


Basic Information

Item Value
RNA id XR_005035710.1
length 3640
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC118938435
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22253652 ~ 22302236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgtaagcaggaatcaggaggatagaattattcTCCCTTGCCAAatgaagggcgagggagagctttgtatgcgtctctgtgtgtggagtaatggtggtcagtgatgaataaatacatgtcCATTGGGTTGGAGGAAGAACAAAATACTGTTTAGGGGGTGTGGGGGGAATGACCATATGGAGAGGAGCATGACCATTAGGGGATGTGGGGACcaagtgaaataaaaacaaaattaTAAGAAACAAATAGATAATCTACATATTAACAACTGCAACTGTGATGAATGTCGTTGGGGTGGGGGAAGAGTAAAAGTCAGTTGAGGGGGGTGTCCATAGGGGAAGCAGAATGTAATAAGTAAATTTGCTATCTTGAAAAATACTGCCAAATACTAACcaaataaaatgtatataaacATACTGTAAGTATAAGTGATTTTTTTAAAAGGGCTCTGTAGCCATCTGAGAACTCAGCAAAGGTTTCTAGTTCAGGCTGAACACACAGATAAATATGACAGTTTATTAATGTAATGTAAAACCTGTCGCACACCAGAATAACGTGTAcctgcacttacaataaacaattccggacaaggacatggggggaacagatggttaaatacacaacatttaatgagggaattgaaaccaggtgtgtgggaagacaagacaaaacaaatggaaaatgaaaagtggatcgatgatggctaaaAGACCGGCCGAACGCCGCACGgaaaggagaggaaccgacttcggcggaagtcgtgacaattaaTGTCTGGGTTTGAAAACATTGACAAATCTGTTCTTATATCATCGACAACTTAGGATTTGTTGGTTGAATTAAGCTACAGTTTTGAAACACGAGATATGGTCAAACAAAGAAACACTACAGTAGTGCAACACAATGAAAATGTAGGCCTAATGTCCCAGTTTAAATTAATGCGGGAATTGATTTTAACTCATTGGATATTTAAATTGTAGGTAGTAATGAATCATGTTCGTACCAGAAACATACGTTGTGAGACAGCCAAGCTCACCACAAGAAGTATACATCCTCCCTTGTCCTTGTAACAGTCAAGCTGCCTGATTAGACAAAGTTGCAACAGAAACATTTAGTAATACAGTTCTGTAGATTCTGTCATTTCCTCCATCAGTTCTGTACAATCTGTAATTTTTTTCCATCAAAGGAATTCGACTGCGACCAATAGTGTTTTCTTGACTGCTTAGTCATGCAATCACTGTATCGTACAGTTAAACAAATTATAATTTATATTTATCACGTACAAGTCTGTATTGGATGATATGCaatgtttttttgcatatcccaactctccctgagacccTTGGGAGAGTGGGATCACAGCCAGGGTTCGCCATTATCAACAGCGACCCTGgacaaattagggttaagtaccttgctcaagggcacatcgaaatagtttttcaccttgtcagctcagggtttcGAACTAGcatcctttcagttactggtccgaTGCTCTAACTGCCAGGCCACCTGCCGCCCTAATGCTTTGGTCCAAACTTAATCAGTGGAACCTTATCTGAAAATCCACCTGGATGGGGACGATGATTCCTCAACTGGACTTCAGCAGCTCTGAATTCCCTCAAACTGTCTTCACAGTTATGAGGAGGAAAAGGTTGTGCCTATACATGGATTCCCTTATTCTAACGGTGTTCCCAGACCTCAAGAAACATTGTAAAGATGCTGCAGGCTCACATTATTGCCCTCACCCttacatattttattttcatcAAAACAAAAGACAGTGTAATAATTGCACTCCAACGCAACTAGAAAGATCACCTCATTCATCTAAATATCCCTAgtgattatttttatttctcattaaaatctttgtttttttttactgtttcaCTAAACTGTGGAAATCGGATGAGGTAATTAATATTAGATCTTTATTATCTGACCTCCAAATCATTAAAAAGCAAAAGAGCAAAATGAAAGACACCAGTTCAGCCTTCTTGAGGAAAGGAGTATTTGTGGACCACCAACCACCATATACAGTAGTCTATGTAAGCCGATACTTATGTAAGCCGATAATGTCACATTTTACCTTCCAGCTAAGACACATGCAATATTTGGTATGACCTGATGAGTGTTTTCTTCATACAGTATAAGACCGTAAATAGAAGTGTTCAGGAAAGAGTGGGGACAGTTCGTCAAGTCTCAGTGCTCACTGTTATGCAAGACATTAGAGATGGGAAATGTCTGAAAAGACAAAGACGGATCAGGTTAGTCTGTCCTTTTGTGATACACATCATCAAGCAAGAAACAGTGTCATCACTCATGCAGAGACAACTGTACATATTTCAGTCAGCTGCAAGAGCATCAAACAGAGTTACTGTCAGTTGTTGTCTATGGTGAGGCAAGGTTTGTTGCTATTTGTTCCTGTTGTTACACATATTTGTGCTGATATGAGGGATGAGTGAtttgtattgattgattgattgacttgtATACATTCTTTCAAAGGCACAACATCCATTTCAAACTGTTATTTGCACGTAGAAGGTAAACATGGCACTGTGACACAAAGGTTATATTCATTTACTAGGTAACGTTGTAAACAAACACGGTAAGACTTGTTTCAAAATAAAGGATGTAGAAGTATATTGGGGGACTGAAAGGGGCATGTTAGAAGATAGTGTTTATGTCACGACTTCCGTAGAAGTTAGTGCCTCTCCTTGTCCGGGCGGTGTTCGgctcaccggctttctagctgccaccgatctacGTTTCTTTTTCTATTTCTTTTGTCTTGATTgtgcacacctggttcccattccgtTATAATTattttccctatttaaccctctggttcccagtATGTTTTGTGCATGTTTGTTCCTTGTTGAGTGTTATTAGACTGCGGTGTTATGGTGTGTTTTCCCTGCGTGGAATTTTATGGTTGTTTCTTTCCGAGTGAAGTATGTTATTtgactcagttctgtgtcctgcgcctgactgcGTCCTCACCGCTGCACACTGACACATGACAGTTTATTAGAAACACATTCAAATTATTAAGATATTAGATCGCATTCATTGAGAAGGCCAGGTGAGGATGGGAGCTGTCACATCAGTGGGTCAACAGCAGCAGAGGAGTCAGAAGGATGACCACAGGGGAGGAGGCAAAACCAGGAGAGAAGCCAAGGATGCTAGAGGTCAACCTTACCTTTGTTTATTTTGTCAATGCCCAACTCATCTTCGATGTCTTGAAAAGGAAAGAGTCTATAATATTAATGTATCTCCTCAATACTTCTTCTGATGCCAGAGCCAAACCATCCCTGACTACAGCCATTCCTTCTGGAACAACCTCTTATCTGCATCAAAACGATGTCTAATCTCATTCTGTGCGTCACCACCATAGTGGGATAAGCTGCAAGACGCAGCTTGTTCAAAGAGACTCCCGTCCTGTGTCTTTCCACTGATTGACTACCTCTCGATGTCTTCTCAGTTCCCATCATATGGTTCAATAGACCAtcattgttaattgtttactccatgtgtaactctgtgttgttgtctgtgtcacactgctatgctttatcttggccatcttggctatctggttaaataaaggtgaaataaaaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141003 lncRNA upstream 115486 22172712 ~ 22173051 (+) True G122065
TU141027 lncRNA upstream 186255 22102015 ~ 22102282 (+) True G122077
TU140940 lncRNA upstream 264204 22019275 ~ 22024333 (+) True arhgef1b
TU140939 lncRNA upstream 264263 22019275 ~ 22024274 (+) False arhgef1b
TU140962 lncRNA upstream 269722 22016961 ~ 22018815 (+) True G122030
TU141087 lncRNA downstream 12209 22314445 ~ 22316058 (+) True G122135
TU141180 lncRNA downstream 71756 22373992 ~ 22374650 (+) True G122225
TU141198 lncRNA downstream 109625 22411861 ~ 22412408 (+) True G122242
TU141217 lncRNA downstream 127574 22429810 ~ 22431364 (+) False G122256
TU141216 lncRNA downstream 128211 22430447 ~ 22431364 (+) True G122256
XM_021624309.2 mRNA upstream 58813 22203952 ~ 22229724 (+) True bcl3
XM_036961779.1 mRNA upstream 106453 22154760 ~ 22182084 (+) True LOC110537812
LOC110537837 mRNA upstream 116552 22170979 ~ 22171985 (+) True LOC110537837
XM_036942247.1 mRNA upstream 137793 22148943 ~ 22150744 (+) True LOC110537790
XM_021624236.2 mRNA upstream 156452 22130096 ~ 22132085 (+) True LOC110537821
XM_021624383.2 mRNA downstream 16866 22319102 ~ 22320715 (+) True LOC110537912
XM_021624394.2 mRNA downstream 30056 22332292 ~ 22336707 (+) True LOC110537922
XM_021624419.2 mRNA downstream 40255 22342491 ~ 22346534 (+) False LOC110537939
XM_021624406.2 mRNA downstream 46307 22348543 ~ 22349936 (+) False apoc4
XM_021624431.2 mRNA downstream 50733 22352969 ~ 22356067 (+) True LOC110537948
TU140958 other upstream 269722 22016662 ~ 22018815 (+) False G122030
TU140829 other upstream 463443 21821214 ~ 21825094 (+) True LOC110537735
TU140532 other upstream 702436 21585421 ~ 21586101 (+) True G121677
TU140444 other upstream 741503 21542097 ~ 21547034 (+) True LOC118938333
TU139028 other upstream 1272646 20991754 ~ 21015891 (+) True LOC110509768
TU141079 other downstream 40291 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other downstream 40291 22342527 ~ 22346505 (+) True LOC110537939
TU141081 other downstream 46347 22348583 ~ 22349936 (+) True apoc4
TU141439 other downstream 508531 22810767 ~ 22811263 (+) True G122459
TU143220 other downstream 1522457 23824693 ~ 23825502 (+) True G123980

Expression Profile