RNA id: XM_021624394.2


Basic Information

Item Value
RNA id XM_021624394.2
length 1881
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC110537922
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22332292 ~ 22336707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCCCAGCTACAGGCGCGCGGCCACCAGGACAGTATAAAAAGCCCCGCGAACTGTCCCTAGAGCACGGAAGGAACTGGATTTCTTAGGTGTATCTGTTTGTCAATCAATCATGAAGGCTGTGGCAATAATCCTTGCTCTGGCAGTCATCTCTGGCTGCCATGCCCGCGCTGTGCGCCAGGCAGAGGCCCTCCCGAACCTCTGGGAGGAGAACGTTGAGCGCTTCTGGACCTATGTGTCTGAGATCAACAGCAGAGCCGACGGATTGGTGGAAAACCTCAAGGCCTCCCAGCTCAGCAGAGAACTTGACACCCTGATCACTGACACCGTGGCTGAGCTGACCGTGTACAGGGAGGACATCCAGACCAAGTTGGGGCCCTACTCCCAGGACACAGCCGCCCTGCTGGGCCAGGACCTGCAGCTTCTGACCACCAAGCTCCAGACCGACATGGTTGATGCCAAGGAGCGCAGCACACAGTACCTGGGAGAGCTCAAGACTATGATGGAGCAGAATGCTGATGATGTCCACAACCGCGCCAACACCTACACCCGCAAACTGAAGAAACGCCTTAACAAGGACACCGAGGAGATCCGCAAgaCAGTGGCCACCTACCTGGGTGAGATCCAGTCCCGTACCTCCCAGAACATGGATCTCGTGAAGGAGCGTGTGGAGCCCTTCGTGAGTCAGGCCCACGACACCGCCGGCCAGAGGCTGAGCAGCTTCACTGACCTACTGAAGAACCAGGCCCAGGACCTGAGCCAGCAGGTCTCCACCCAGGCTGAAGGCATGCGCGAGCAGCTGGAGGCCACCGCCGAGGACCTGCGCACCACCCTGGAAGGCAAGATCGATGAGCTCAGCAGCCTGATCGCCCCCTACGCCGCCAAGATCCGTGAGCAGCTCCAGACCGCCATGGACAAGGTCAAGGAGACCGCTGTCTAAATGGACCCAGGGGAGGGAGGGGTTTGGAAGCACTGTGCCACCATTCACCTAGCTaccacagagaggaggagggagttaAATGAAACTGATGCTGTTCTCACTGTTGGCACTGTGTTTTGGTTGAGGGgggttgatagagagagaggggtgaggatggCAGAGCTTTGAAGGGGTCTTGAGCAGACAAACACAGTCCTTTATGTCTGTTCAGGCCTCAGAAAGGCATTTACTGTTTAAATCACTTCAATCACTCTCTCGCTGTATTATCTCCTCATCTCAGAACACAAGAGCCACACTCAATACTGCCTTTCTTAAACACACAAGAGGCCATTGTTTTTAACCTGCTTTGCTTGTCTTCCTCATTATACGTCCTCTAGATGTCTCCTCCAAATTGTTCTACTAATTTGCATCAGGTTTCTAAGGCTGCTGTACGGGATACAAGTGGGGTTGAAACAGTATCTAACAATCGTGAGCCAAATTGTCTCCGGCCCATTCCAGCGCTGTCCCTGTCCTTCATTTCAATAACTGCACTGAATTAAGACTGGACTTTTCTCCAGCACTAGCATCAGTCTGTCCAGAACCAAAGGAAGAACCACTCCGTTCCTTGCTTGTCTATGATTCTGTATCTACACCTGCTTTGTAGGCTCTGTATTTGTTGTGATTCATATAGGAGTGtatttactatgactgtgatatgacgCGAATATGACAATGAAACTAAAAGGTATACTTCACAGGGTCCATATATTACCTGTCTGTATTAATTCAGTTTGGCCAGAGTGTCTCTGCCACTTCACAATGTAACACGCCCTGCTGCTCACCATAGCACACTGTtcgtctggctgactggctgtctggctgactggctgtctggctgactggctgtctggctgactgcAGTGTGCTACCCAGCGCTGCGGAAATAAAATATGTAAAGAGTT

Function

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG:

id description
K04524 APOE; apolipoprotein E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141087 lncRNA upstream 16234 22314445 ~ 22316058 (+) True G122135
TU141003 lncRNA upstream 159241 22172712 ~ 22173051 (+) True G122065
TU141027 lncRNA upstream 230010 22102015 ~ 22102282 (+) True G122077
TU140940 lncRNA upstream 307959 22019275 ~ 22024333 (+) True arhgef1b
TU140939 lncRNA upstream 308018 22019275 ~ 22024274 (+) False arhgef1b
TU141180 lncRNA downstream 37285 22373992 ~ 22374650 (+) True G122225
TU141198 lncRNA downstream 75154 22411861 ~ 22412408 (+) True G122242
TU141217 lncRNA downstream 93103 22429810 ~ 22431364 (+) False G122256
TU141216 lncRNA downstream 93740 22430447 ~ 22431364 (+) True G122256
TU141290 lncRNA downstream 237410 22574117 ~ 22578051 (+) True G122325
XM_021624383.2 mRNA upstream 11577 22319102 ~ 22320715 (+) True LOC110537912
XR_005035708.1 mRNA upstream 30056 22253652 ~ 22302236 (+) False LOC118938435
XR_005035709.1 mRNA upstream 30056 22253652 ~ 22302236 (+) False LOC118938435
XR_005035710.1 mRNA upstream 30056 22288537 ~ 22302236 (+) True LOC118938435
XM_021624309.2 mRNA upstream 102568 22203952 ~ 22229724 (+) True bcl3
XM_021624419.2 mRNA downstream 5784 22342491 ~ 22346534 (+) False LOC110537939
XM_021624406.2 mRNA downstream 11836 22348543 ~ 22349936 (+) False apoc4
XM_021624431.2 mRNA downstream 16262 22352969 ~ 22356067 (+) True LOC110537948
NM_001124260.1 mRNA downstream 39432 22376139 ~ 22378150 (+) True apoc2
XM_021624444.2 mRNA downstream 44626 22381333 ~ 22384757 (+) True LOC110537956
TU140958 other upstream 313477 22016662 ~ 22018815 (+) False G122030
TU140829 other upstream 507198 21821214 ~ 21825094 (+) True LOC110537735
TU140532 other upstream 746191 21585421 ~ 21586101 (+) True G121677
TU140444 other upstream 785258 21542097 ~ 21547034 (+) True LOC118938333
TU139028 other upstream 1316401 20991754 ~ 21015891 (+) True LOC110509768
TU141079 other downstream 5820 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other downstream 5820 22342527 ~ 22346505 (+) True LOC110537939
TU141081 other downstream 11876 22348583 ~ 22349936 (+) True apoc4
TU141439 other downstream 474060 22810767 ~ 22811263 (+) True G122459
TU143220 other downstream 1487986 23824693 ~ 23825502 (+) True G123980

Expression Profile