RNA id: XM_036961789.1


Basic Information

Item Value
RNA id XM_036961789.1
length 1449
RNA type mRNA
GC content 0.58
exon number 1
gene id LOC118944072
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22390731 ~ 22392179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTTCATCTTCCAGACACACTGCAGGTCCTGGTGTGTGAGACTCCCCAGATGCAGAGGAAGagccaggaccaggaccagagtCAGGACCAGGACCAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAAGACCAGAGTCAAGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCATGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGagtcaggaccaggaccagggtcaGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCGGAGTCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCATGACCAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCATAACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGagtcaggaccaggaccaggacaagAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCATGACCAGAGTCAGGACCAGGATCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCATAACCAGAGTCAGGACCAGGACAAGagtcaggaccaggaccagggtcaGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCATAACCAGAGTCAGGACCAGGACAAGagtcaggaccaggaccagggtcaGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACAAGAGTCAGGACCAGGACCAGAGTCAGCACCAGGGTCAGGACCAGGGTCAGGACCAGGACCAGAGTCAGGACCAGGACCAGAGTCAGGACCAGGACCATGACCAGGATCAGagtcaggaccaggaccagcGCCAGGACCAGGAGCAGagtcaggaccaggaccagggtcaGGACCAGGGTCAGGACCAGGACCAGAGTCAGGACCAGggtcaggaccaggaccaggaatCCACCATTAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141180 lncRNA upstream 16081 22373992 ~ 22374650 (+) True G122225
TU141087 lncRNA upstream 74673 22314445 ~ 22316058 (+) True G122135
TU141003 lncRNA upstream 217680 22172712 ~ 22173051 (+) True G122065
TU141027 lncRNA upstream 288449 22102015 ~ 22102282 (+) True G122077
TU140940 lncRNA upstream 366398 22019275 ~ 22024333 (+) True arhgef1b
TU141198 lncRNA downstream 19682 22411861 ~ 22412408 (+) True G122242
TU141217 lncRNA downstream 37631 22429810 ~ 22431364 (+) False G122256
TU141216 lncRNA downstream 38268 22430447 ~ 22431364 (+) True G122256
TU141290 lncRNA downstream 181938 22574117 ~ 22578051 (+) True G122325
TU141296 lncRNA downstream 188325 22580504 ~ 22583666 (+) True G122330
XM_021624444.2 mRNA upstream 5974 22381333 ~ 22384757 (+) True LOC110537956
NM_001124260.1 mRNA upstream 12581 22376139 ~ 22378150 (+) True apoc2
XM_021624431.2 mRNA upstream 34664 22352969 ~ 22356067 (+) True LOC110537948
XM_021624406.2 mRNA upstream 40795 22348543 ~ 22349936 (+) False apoc4
XM_021624419.2 mRNA upstream 44197 22342491 ~ 22346534 (+) False LOC110537939
XM_021624473.2 mRNA downstream 103942 22496121 ~ 22544404 (+) False LOC110537974
XM_036942454.1 mRNA downstream 137780 22529959 ~ 22544404 (+) False LOC110537974
XM_021624466.2 mRNA downstream 141856 22534035 ~ 22544404 (+) True LOC110537974
XM_021625029.2 mRNA downstream 462560 22854739 ~ 22856678 (+) True LOC110538298
XM_021625050.2 mRNA downstream 464391 22856570 ~ 22858072 (+) True LOC110538314
TU141081 other upstream 40795 22348583 ~ 22349936 (+) True apoc4
TU141079 other upstream 44116 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other upstream 44226 22342527 ~ 22346505 (+) True LOC110537939
TU140958 other upstream 371916 22016662 ~ 22018815 (+) False G122030
TU140829 other upstream 565637 21821214 ~ 21825094 (+) True LOC110537735
TU141439 other downstream 418588 22810767 ~ 22811263 (+) True G122459
TU143220 other downstream 1432514 23824693 ~ 23825502 (+) True G123980
TU143245 other downstream 1469738 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other downstream 1469738 23861917 ~ 23881636 (+) True LOC110538497
TU143372 other downstream 1754682 24146861 ~ 24148593 (+) True G124121

Expression Profile