RNA id: XM_021624466.2


Basic Information

Item Value
RNA id XM_021624466.2
length 2866
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110537974
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22496121 ~ 22544404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGCTTCAACATTGACACAATTGATATGTTTGTATAGACACGACCAGGAGATAGGTGGGCAGAGAGGGTAATGACGGTTTATGAATGTGAGTTTATTCTGTCAGTCAGCACAGAAGAatagagtgagaggaagagatagGGAGGTAAAGAACGAGGGAAGGTTTACAGAGGACAGATTAGAACTGTCATAGacttacattttacatttacattttagtcatttagcagacgctcttatccagagctataCATCCACAACATATCAGGTTCAGCCATGGAGCACATGTGGCTGAACTCGGTGAGTCAGTGTGTGGTATCTGTGTCGGTGATCGTGGTGAGTGTGAGGATGTCTATGGTTGGTGGTGGAAtgcaggaggatggaggaggcCAGGGTGGAGGTGGTCATACCCGGAGCGGGAGTGTTTCTGCCTGCCTGAAGTTGTGTCTGGGCTGGGTGGGGGCAGTGGGGGGTGCGGTGGGGGTTCCTGTCTCTGTGCTGCTGAACCTGAGGAGTCCCCAGTGCCTGTACACCTGCATCACCCTGGTGTGCTGTCCTCTGCTGGTCAGGCAGTTCACTGTCTGCCTGCTGCTGCTCATGACCCTCAACTCCCACCTGAAGCACCGCATGGGGAGCaggtACAGTTTGCTGGTGACACGTCGTCGGGCCCTGTGTGTGGTCCTGCTGTGCTGGGTggcctctgtcctctcctcctttgcCCAGTTCATCGGCTGGAACGTCCTGGACAcctggggaggggaagagggatggCTGGATGGGCTGGGGCTGGACGGCATCCCCCCAGGCAACTGGACCTCCCCTCCTCCCCGTCCGATGCCTCCCAAGTACAACCAGGACCGCTCTGTGATCGGGAAGTACCTCCCTTACGGCGGCTTCCTGTCTAAGTTCTACGTGGAGGATCTCCATAACTTCACCTATGCAGAGATCCATGGGAGCCACTGGGGGGTGTGTGCCCCCGACACTGTTCTCAGCCCCCAGTTCCTGGTCTATGTCTATGGGGTGACCGTCTTCCTGCTCCCCCTAATGAGCCTGCTGGCCATTTACCTAGATCTGGTCTGTGTGATGCCCAGACAGGACCCTGATGGTCCGGGCTCTGGCCCCCCAAAACACCGCTCTCCCCGTGCCCGCTCCCTAGgcctctccctctgccttctTGTCCTCCTGTGCCTGCCCCTTCACATCACCCACTCCCTCCTGCTTTTCTCCCCAGGCACATTGCCCCCGACCTGGGCTTTCCCGCTGGTCTCGCTCCTGTCGCAGCTGTATGGTCTGGTGCCCCCTCTCCTCGTCACCATTCCCACACAACGGGTGGGGGCCGAACAGGTACCTCTGCCCCACCTGGCCCCCATAGGGGGTAAGACGGTGGGCGGAGCCCTGTGTTCAGCTGTGCAGGCGGCATCCTGTTCACTCAAAGGGAGGCTGTgcccagatgtgtgtgtgtaacatggaACGGGAAAAcagggaaggtgtgtgtgttaacaCGTTGTTACAACACCAGCATTCCCATCTCATATGTTCTAATTCACTCTTTTAGGCTCTGTTTACACACATGTCTAATATGGTAATACATCGAAATTGCTGAACATCCAATTTCCCTGGAGGGTTGCCCACAAACATAAGTTCCAATCATTGTGTGTAAACAGCGCCATGTATCATTGTGTGATTCACAAGGAGCTTCTTTGTGTATGTTTCCCCATATATATTCATCAACCTGTCAGTAGCACATACTAGTTAATTcgtttttcacacactgtactgTTTAATTATTGGGTCCCATATCAAATAAGGTCACTAACCAGGCttacatccaacctttttatgctgTGTAAAGTACATTTCGGATAAAAAAGGTCaagacaggcctgatggaaacatctAATTTGTCAGTAGACGTTCCAAATGTCAGCcaaacaaaatacgctagacaagcTGGGATCTTTTTGTATCTGTAAAATTCATAATGTGAGAAATAGCGAGGAAACGCCtcgcaaatatttatataataatcATACCTTTATAACCATCATACCGAAGTAAACTCGGAGTCACACAATGACATGGTTTGTGGTCCttccactacgactcgggaaaccatgtcgtttattaggctacagatttagTAAATGATAATCAACTTTACAGGGTGGTGAAAATGCAAGTGATGAACGTCATGCTCCTttacaataaatattgagggtctccCTCTGCCATTTAACAAATTAAAATGATATTGCTCTTTTATCCAGAATAATCTCATCAACCACACTGTATCTGTCAGCTGTTGTCTTGAGCGCAAGTGCCAAACCAGAGTGGGCATATTTGCTATATAATGGCAAACATTTTTTGTGActaaaccatcagtagagttgacaATTATGTTCtattttttattcagtacatgggaatttaactgcAAACGTTATTTTTATGTGTATTACATCATCGTGCACAGTTTTTTTTTATCAGCAACGAGAACATTTGttggaaacacatctctggtggtaAAATGTTTTAATGAGGACTTTCACacgaaaatctgtcgccaattggatggaaacctagctactgagaGAGTAAATATCACGCAGCTGACTTCTCATCTCACACTGATCCAGAACTAAGCCTGGGACTAGATCAGGATATGTCTGCATTGTAACATgccttctgctgctgctgctgcggaTGCTATAGATCTGGCTTTGATCATGTTTAATTAAACACACAGTAATAACAGCATGGTTGGTCCGGCGACGCCCTCATAATTATAGCAGAGAAACGTTTTTCATGGCTGTTTTGATTAACTGTGTAAATCTAACACTCTCCTTAAATAAAAGGCCTTGCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141217 lncRNA upstream 102671 22429810 ~ 22431364 (+) False G122256
TU141216 lncRNA upstream 102671 22430447 ~ 22431364 (+) True G122256
TU141198 lncRNA upstream 121627 22411861 ~ 22412408 (+) True G122242
TU141180 lncRNA upstream 159385 22373992 ~ 22374650 (+) True G122225
TU141087 lncRNA upstream 217977 22314445 ~ 22316058 (+) True G122135
TU141290 lncRNA downstream 29713 22574117 ~ 22578051 (+) True G122325
TU141296 lncRNA downstream 36100 22580504 ~ 22583666 (+) True G122330
TU141308 lncRNA downstream 72028 22616432 ~ 22620371 (+) True G122340
TU141322 lncRNA downstream 86924 22631328 ~ 22631883 (+) True G122350
TU141388 lncRNA downstream 183978 22728382 ~ 22728884 (+) True G122415
XM_036961789.1 mRNA upstream 141856 22390731 ~ 22392179 (+) True LOC118944072
XM_021624444.2 mRNA upstream 149278 22381333 ~ 22384757 (+) True LOC110537956
NM_001124260.1 mRNA upstream 155885 22376139 ~ 22378150 (+) True apoc2
XM_021624431.2 mRNA upstream 177968 22352969 ~ 22356067 (+) True LOC110537948
XM_021624406.2 mRNA upstream 184099 22348543 ~ 22349936 (+) False apoc4
XM_021625029.2 mRNA downstream 310335 22854739 ~ 22856678 (+) True LOC110538298
XM_021625050.2 mRNA downstream 312166 22856570 ~ 22858072 (+) True LOC110538314
XM_021624836.2 mRNA downstream 449347 22993751 ~ 22997374 (+) True LOC110538188
XM_021625038.2 mRNA downstream 511377 23055781 ~ 23069547 (+) True LOC110538306
XM_036942767.1 mRNA downstream 532942 23077346 ~ 23119231 (+) False kcnn4
TU141081 other upstream 184099 22348583 ~ 22349936 (+) True apoc4
TU141079 other upstream 187420 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other upstream 187530 22342527 ~ 22346505 (+) True LOC110537939
TU140958 other upstream 515220 22016662 ~ 22018815 (+) False G122030
TU140829 other upstream 708941 21821214 ~ 21825094 (+) True LOC110537735
TU141439 other downstream 266363 22810767 ~ 22811263 (+) True G122459
TU143220 other downstream 1280289 23824693 ~ 23825502 (+) True G123980
TU143245 other downstream 1317513 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other downstream 1317513 23861917 ~ 23881636 (+) True LOC110538497
TU143372 other downstream 1602457 24146861 ~ 24148593 (+) True G124121

Expression Profile