RNA id: XM_036942617.1


Basic Information

Item Value
RNA id XM_036942617.1
length 6323
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110538050
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22822697 ~ 22838508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAtttcgagttggatgaccgttcaaaaccaTTTTTCCCAACTCGTTTTTCTCCCGAGTTCCCATTTGTGTTTTTGAACGCGTCATGATTCGCTGATATTCTCGCGCCAGATCTGTGGCAAGGAAGTTGTCATTTGTCGTAATTTCCTAGGACGGAACCACTGCAACAACAGTGCGGAGGAGAAGAGTAAGAGGCGCTCCGAACAGCATTCGAGGCCTCCTATGTCATTGTTTACACCGTGAAAGGAGTTTTATTTTTGCATGCATTAGACAAGCCCCCCCCTCTGAGAAAACTCAGGGGAATTTAAGTAATAGAAGCGGTAAACACTAACAACGAAGATCCAAGTTGCAGTGGCCTAGTAACAGCAAATCAAGCACCACGCTGGGTGTTAGCTATGGAGGATGTCTCCGCTGTAACGATCAAAGGCGAGGGAGGAGATGAACAGGAGTCGGAAGATGTCAGAGAACATTTAACCAAGACCGAGAACAGCGCCAGCAAGTCTGCCAAAGATGACAGTACCGATGGAGTCGCCCTGACCTCCCATTTTCCCCTTTCTATTTTTAGGGGATGGGCTTTTCCGCTGTCTGGATTGTGGAGAAGCCTTTGGGGAGGAGGTGGCCTACCAGGAACATCAACATGAGCACATCCATGATGGCCCAATAGTCTGCCTGGACTCTGACTCCCAGTTGGATGGCTTGCTTGTTTCAGAGAGTGGGGGCCAACGGACACTATGTTGCGCTCTTTGTGGGCGCAAATTTGCAGACTCAAGGGGTTTTTACTCACACCAGGTCAAACACCGTAATGAAGCCCTTAAGCAGTCAACTCCTGTTTTGCAATCAACTCCTGTGGCCCAGTCAACAGCTGGGCCCCAGTCAACCCATGATCAGAGCTTGGGGGTGGCTAAGCAGTATGTCTATGAATGTGAAGACTGTGGGAAATCCTATACTTCGATGGGCTCTTTCATCAGTCATACACGCTCACACAAACAAGCTTCCAAATCAGTTTTCCATGAGCTGGCACACCTGAAAAAGAAGTCCTTTGAGTGTCAAACTTGTGGTCGCTGTTACTCCCGTTCATCAGCTCTTGATGCTCACCGCCGTTGTCATGAGGTCAAACTAATCCCAAAGTCCCGCAAAAGGGGTGCAGAGAAGCAACCACCTGCAGAGGAGCCTGCcattgcaacagaggacagcaaCAAAGCTTCTGAACAGATAGATAAGGCACAGGAAAATCTGTTTGGGTGTTCATGTGGCAAAACATTTCGCGCCCAGTCTGGCCTGAAAACACACCAACGATTTAGCCACAATGAAAAATGTTCTCCTGAAAAGCTTAAGAGAAAACCCAAACAATTTGACTGCAGTGAGTGTGAGAAGACCTTCAGTTCTTATGCCGGCATGCTCTGCCATCAACGCTATCATATGAAACGAGGTGGTAGTGGTGGCAAAAGGTTTCCATGTGAGGAGTGTGGCAAGGTCTTCACAACGCTCACATTCTACTACAAGCACCAGCGTTTGGCTCATACTGAAGAGACTCCAGCAAAGTCTTTCCTTCATCAGGTTTGCCAGCTCCAGAAGAAAGCGTTTGAGTGTCAGGAGTGTGGGCTCCGATTTTCCAGGGCCTCGGCTCTCCAGTCCCATCGGCTTTGCCATAACGATGTTTTTGGACAGACTGAGAAAGAATCCCAGACACAAGCATCCCCACTACCTCAACATAAGCTATTACTAGATAACAAGACAGAAACTGAAACATTTGCTTTAGGGGCCATTGTCTACCCACAGGACACCTCTCAGACCCTTGTGACCGAGAGAGACCCCTGTTTCTGTGAAACTGATGGTGATGCAGAGGCTGATGGAACTGATGATGTCAATGTAGAGGTGATCAGTATAAGTGCCTCAGATGGCTCTGTAAGGGATGAAGAAGAGTCACTACAAGAACTCAACCCTGATCTTGAATTACTGTGTGAATCAGACCAGGAGGGAAAAGAGGAGATGGATGCTGTGTTGTGTCCAACGGAGTACATTTCTAGTACACTTAAGTCTAAACCAGAGATTGATCTGAAAATTGTACAAATTGACTTTCCGCCATTTGCAGGCGAAGGAGCTCGAACAGAGAAGGTTCAGGGACAAGAGCCACCTAAAAGATTTAACTGTCCTGAGTGTTACCGTTGGTTTACCAGTGGTGCATCTTTGCGCTCTCACAAACTGTGGCACAGAGTAGATGGCAAAAAACGATGGAATCCTGAAAATGATATTTTCAAGTGCGATGTGTGTGGGTTTGACACTACACATCGCAAAACGTACCACAATCACATGCGAAAACACGATGGCCGAAAACCACACAAGAGTGTATTTTACCAGCTTGCCGGACTACAGAAGAATAGCTTCAAATGTGAGGTGTGTGGAAAGTGTTTCTCACGCATGTCTGCCCTACACTCTCATCAGCAACAGCATCCAAAAAGCAAAGCTCATCCATGTCCAGATTGCGAGAAGACTTACTCTAATGCCAGTGGTTTGTACAACCACCGCAAAAGCTGCCACGCTCCAACCCCCACCCAAGATGAAGTATCAGACACTAAAACTGAAGTGTTTAATCCAAAGAAGACTTTATTAGGCCCAACGGTTTATTGCGAGCGATGTGGGAAGGGCTTCTGGTCATTGGGTGCTTACGCTCACCACAAGCAGAATCAAGCTCAGTGTGCACATTTGAAGGAGAAGCATGAGCCAACAGTGTCTTCACATTCTGTCAATGGCCCTCCACATGTTCGTGGTAAAGTTGCCTGCCCTGTATGCGCAAAGAAATTTCGTCACCAAGGCATTATGAAATCTCATATGAGGAAGCACGAGAATGGGAATCATAGATGTGAGCTTTGTAGCAAGTCTTTTCGCATGTTCTCAAGCCTCCTCAGGCACCAGGTTGTACATAATGCTCAAATCCTCCCGCCTCCTATCAAGTCTTTTCAACATCAGGTAGAACAAGTGAAGAAGAACGCATACAGCTGCCCTGATTGTGGAAAACTGTTTTCACGGGCCAAGGCACTTAAATTCCACATGAAGAGCCATGGTTATGAGACCGACTACTCTGCCTCATCGCCTAAATCTGCTCTTGAGCTAGAGGGGCTGAAGTGTTCGACATGCCTTTACCATTTCAGCAACAAATCCTCATTGCATACTCACCGAAAACAGTGTGGCAAGATAAAGACTGTCAGTAAAAGCTACAAGGAGGATGTTGCCCAACATGACACAGTTCCTAAGGTGAAGAAGCTCAAATGTCCCACCTGCCCTTCTCTTTTCAACAATTTACTGTCATTGCAGTATCATCAAAAAGAATGTGGCAAGCCGAGGGCAATTGGAGGCTTGGATGCCAAAGTGAAAGGAGGTTTAGAGAAGGTGACAAAGTGCATTGTCAAAGACCTTGTGAAAACAACTCGGTCAAACAACTCTGGCACTGAGAAAATTACTAAATCTGTTACTGAGAAGGAATGTGGTGAACAAAAGGAGACCAGTGAGTCCCAAACCTTGAAAGCCGCCACaatcaacacaactgatttgaaATACAAATGTAAAGAGTGTGAGAGAAGCTTTGCTGTTGTAGGAGCACTGAATTTCCATAAAAGGATTCATGTTCTGGGTCACAAGTCTAAAGTAAAACCAAAGCTGAAATTTCAAGTGGCCGCAAACCCTGAAGAACCTAAGCAACCCAAAAAGGTAGAGCAAACAACTAAAGGCCAATTCTGTTGTCCAGAATGCGGAAGACGTTTTATCTCCAATGCAGCCCTTGGCACTCACAGACGATGGCACACAGATAAGAAGTTTGCTGGGTCACTGATAAAAGATGACCATACAAATTCTGTTGGGCACAAGTCAGTGGATGAGGGACCTTTTCAGTGCAACAAGTGTGGTAAGGGCTTCTTTTACCTGTGTGTTCTTCGCCGACACCAGTTGTATTATCCGCCATGTCAGACCAAAGCCGAACCAGAGCCCGCAGCTGACACCAGCATGGAAGGCAACCGCAATCCCTCACACGATGAATTTGCATGTCCAGAATGTAACACAACTTTCGTCAAGGGCTCACTTTTAGCAGCTCACTATGAAAGTGCGCATAACAAACCCATTGAGTCTGCAGATCTTCAGGGGGACCCGTCCATGACCGTGTCCATTGAAGAGGTCCCGGAGCAGCCTGCCACGTCACACAGCAAGTCTGAAGTCATTCCATTAAAGAAGCCAAAGCTTAAATCAAATCTTCACCAGTGTCCTCATTGTGATATGAGTTTCTTGAAGGTTCGAGGCTTGCGTGCCCACAAATGGCAGGCCCACTCCCAGGGCAAGAAGGTTAAGAGCAAGGGCACTTTGGCTGAGAGCAGGGACTCTGTTGCCATTAACACCTTGGCTACCAAGGAAAATGAACTGGTTAATGAGAGTAAGGACTTAGTTACAGAAAACAAAGGCACTGTTCTCAAAACCGAACACTATGTTACAAAGAGTAAGAATGCTGTGGGCAGAAGGAAGAAAAGTCGACCGGGTTTCAAATCCATCCCTTGCgttgactgtgggaagagatacAGTTCTTCTGGGGCACTCTATAATCACAAGAAGATCTGTGGAGTGCTCAAGCAGGAAGTTAATCCAGGAATGGCAGAAGTAGTGGAAGAGGAACCCTCACCACCAACCCGTCTCTATGAGCAGACAATCAAATGCCTCTTCAAGTGTGACAAGTGTGGAAAAGCTTTCCCAACTGAAGAGCAACTAGGAACCCACAAGGACTTGGAAAAGAGCCGACCTCACTCTTGCGCCCTGTGCTGCCGTGGATATTGGACTGAGACTCAGTTGCAACAGCACCTGGCCTGGCACGACGAGGTCCGCCGACGACTACCAACAGAGCTTCGTTACAGACTCAGTGCTTCTGTAAGCACAGGGCCCGCTAAACTCAATGTCCCTCTGCCTGATTTGAAGGCGAAGTCATCCCTCAAGCCACTACCTACACCCCCCTCCCGGCCACAGAATAGCCACAAGTGCCAGCACTGTGGAAAAGCGTTTCTATCTCCAGGTGCTCTGCATAAACACGAGGCTCAACACGACAGCGATGGCTCCTACCGTTGCTCCCTTTGTCCCCGGACCTTCAGTGAGATTCGGGACCTCATTGACCATCACCAGGAATGTATGGGTGATGACAAAGGGCAGAGAGATCCCTACACTGCTGTCTCCTCAAGAGACACCGATGGCCTTACTTGCATTGAATGTGGAATGCGTTTCAGTCGAGAGTTGGAGTTGCACCAGCACTACATTGAACATGCTCGTGGAGCATATTAGATTAACGATGGAACTAATACAAGTCAGGAGATATTAGAAGTGAAATTTGACTTTTTCATGCACTTATGCACCTCTTTCTACTAAACTTAAATTTCCAAGGTggacattttttttctccagggTATTTTCAAGCACTAAGTGTCTAAGAGACTTGCTAAATTTGACTATTCTAATTTGACTATTCTAATTATATCTATAGAATGCTGTTAACATTATTTCAAATAGATCCACTAAGTGCTTCTTTAGCTCTTGACACCATTATTTTATCTTTCTCAGGCTTTATTTCACACTGGACCTGTACATAAATGTAAAATTGTCTAAACTCCTTTTATCAGTTCCCCTGATTTGAAATGTGTCCTCTTGGTGTAGAAATGTGTAGttatagagaaagagaaagttcGCTAATGTTTCTCCATGCCTAGAAATGATTACATCCTGTACAGCACAGCGATTTGTCTGTCAAGGTAGGCACTAATTTAAGTTTTGTTTTGCTTGACTTAGTATGCAAGGGGAGAACGTGAGTCACCGACTTTCAGTAACATGCACTTGACTTTCTTTTGAGAAATTAATCAAGTTCTGGCTttaacctgtctatataagatggATGTTTATAGTATTATTAGTACCTATTTTTGTCTGTTTTCTTTTGCAAAATATTACCACACTAACTTTGTATCATTAATAATTAGAAAATTGAATGTTTTCCTGGATTTCACTACCAAAGTTCCCAAATACTAACAGTTGATTGTTACTTTTCTTTTACTTTCCTGTGTTGTGTAAACATTTATCTATCGTAATGAGTTTGATTTAACAAACGGATTTAGCATTTGTTCATGGAGTTATATTCCTTGTTGATTTAAATGAAACCTTCAAGTTTTTAGACTATTGCTAATCTTTTGAAGTCATGACCTTTATGATAACTCATTTCAATGTCACCTTTTCCCTGTACCTTTAAACTACTACTGGTGTCTTATTAATGCAGACATGAAGAGTTTTAGTAAATGGTTAAAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142368 lncRNA downstream 6764 22822697 ~ 22823019 (-) True LOC110538050
TU142371 lncRNA downstream 7967 22820600 ~ 22821816 (-) True G123241
TU142399 lncRNA downstream 11503 22818066 ~ 22818280 (-) True G123268
TU142398 lncRNA downstream 12196 22817263 ~ 22817587 (-) True G123267
TU142367 lncRNA downstream 52472 22776731 ~ 22777311 (-) True si:ch211-79k12.2
TU142363 lncRNA upstream 270 22838771 ~ 22839536 (-) True G123234
TU142370 lncRNA upstream 7249 22845750 ~ 22846463 (-) True G123240
TU142372 lncRNA upstream 16388 22854889 ~ 22855131 (-) True G123242
TU142408 lncRNA upstream 21724 22860225 ~ 22863254 (-) True G123277
TU142413 lncRNA upstream 37734 22876235 ~ 22877073 (-) True G123281
XM_036942529.1 mRNA downstream 16648 22803447 ~ 22813135 (-) True LOC110538006
XM_021624527.2 mRNA downstream 16830 22803447 ~ 22812953 (-) False LOC110538006
XM_021624536.2 mRNA downstream 16831 22803447 ~ 22812952 (-) False LOC110538006
XM_021624567.2 mRNA downstream 26382 22794186 ~ 22803401 (-) True LOC110538019
XM_021624558.2 mRNA downstream 26638 22794186 ~ 22803145 (-) False LOC110538019
XM_036942621.1 mRNA upstream 1487 22839988 ~ 22845481 (-) True LOC118938551
XM_036942747.1 mRNA upstream 9302 22847803 ~ 22850850 (-) True LOC118936533
XM_036942890.1 mRNA upstream 14629 22853130 ~ 22853846 (-) True LOC110534486
XM_036942632.1 mRNA upstream 26441 22864942 ~ 22882607 (-) False LOC110538076
XM_036942637.1 mRNA upstream 26441 22864942 ~ 22882607 (-) False LOC110538076
TU142062 other downstream 451623 22376153 ~ 22378160 (-) True G122972
TU142002 other downstream 672249 22120580 ~ 22157534 (-) False LOC110537842
TU142449 other upstream 166485 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 347139 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 441678 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 1065338 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1320666 24159167 ~ 24161443 (-) True LOC110538705

Expression Profile