RNA id: XM_021624985.2


Basic Information

Item Value
RNA id XM_021624985.2
length 2104
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110538268
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22968051 ~ 22971540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACAACCTGCTATATAGTTGTAGTTATACACGTGCAGTGTTCAACGAATCAGTTTCCTGGTTCCGAATTGCATGTGAACGCGGCATATATAGCTTGATGCGTGTGTCAACATTTCAATTAATTTTGTAATTGTGGCGGAACAAATTAAGAACTGACGTCACACACTTCAAGATACTTCACAGTCTGCGCCCTCCTGACTACAGCAGTGTAGTCGAAGCCTTTTCGTGCCAGACAACGTCCTTCAAGTCCTTCAAGCCGTTCGCCTGTTCTGGTTTGAATATACACGTTATTCAAGGTTCTCACAATGATGGCCTTAACCACAACTCCTTTGTATCCTGAGATCTGGACAGAGCTGTCTCACAACGGCTCATCGCCAGGAAACTCGACAGATGACTATGAGGACTACCCTGACGAGCACGCAGAGCTCCGGCAGTCCCTCAACATCATGTCCCTCATCGTTTACTGCCTGGCCTTTGTGCTGGGGGTTCTGGGAAATGGACTTGTCATCTGGGTGACGGGATTTAAGATGAAAAAGACGGTCAACACGGTGTGGTTCCTCAACCTGGCTGTGGCCGACTTCCTTTTCACAGTGTTCCTGCCTCTAAGCGTGACCTACACAGCCATGGACTTTCACTGGCCTTTCGGCAAGTTCATGTGCAAGCTCAACTCCACGATCAGCTTCTTCAACATGTTCGCCAGCGTCTACATCCTGGTGGTCATCAGCATGGACAGGTGTGTGTCCGTGGTGCGCCCTGTCTGGGCCCAGAACCATCGGAACATACGCAAGGCATCCTATATCAGTCTGGGTGTCTGGCTGTGGGCCCTGGTCCTCAGCTCCCCCTACTTTGTCTTCCGGGACATCGGGGCGTCCTACAAGAACAAAGAAATCATCAACTGCTTCAACAACTTTGCTTTCTCGGATGACTATGACACAACGGAGGTGGCAGAGCTGCGAGTGTTCCGCCATCAGGCCATGATCGTCACCCGCTTCCTGCTGGGCTTCGTGGTGCCCTTCGCCATCATCGTCACTTGTTACGCCGTCATCATCCACCGGCTCAAGAGGAAACGCAACCTGGCCAGCCACTCCGGGCGGCCATTCAAGATCATCGTCGCCGTCATCACAGCTTTCTTCCTGTGCTGGGCCCCCTACCACATCATGGCCCTGATCGAGATGGTGAACAACGCGGCCGCTGAGTTCAGCCACACGTTAGACCACGTCACCACCATCGGGGTCCCCATAGCCACCAGCCTGGCCTTCCTCAACAGCTGTCTGAACCCCCTGCTGTACGTGTTCATGGGCCAGGACTTCAAGGAGAAGCTGCGCAAGTCTATTCTGACGGTTCTGGAGAGTGCCTTCACCGAGGAAGTGTCAAAGTCCAACCACACCTACACAAACTCTGGACTCACAAGCCGTAGCAAGGAGAAGTCCTATTCTGATGCTGAGGTATAAGGTCTTATATTATAATGAGAAAAACTTTATTGACCACACAATGTGGAAATTTGACTTTGGCTTTATGATAACATGATTGACATCCTTAGAAGCAAAGAAAATACAAACATTAGAAGCCCCTTATCATCAAGGTAATTCAATAATGTTTTCAAACAGCTCGATACTTAGTTTAAGGGAAAGTTTAAGGCAGGATTTCAGAATTTGAATGCTGAGCATCTACTCAGTTTTAACAAGGTACATCTCCAGGACTGAATTCAAATCAACAAGTTTGATTTCAATAACCTTTTGTGACTCAGAAATGATGGGGTCTGTGAACACATTTCAGCACTGTTTTTGTATGGGCAATACAGTTACTAATGTACACATGTTGAAAGCGGGGTAGACTGATAATAGAGAATACTGGATAAGATAAGAATAATTTGTATGATACAGACATGTCATTGTTCAAGCTGAAGATATAAATTGTCTGTCTTTTCATTCAAAGACACTTTTTGTACATACTTGTTTTTGTTCAAATGAGGCTAATATTTTCTGTGATTTAAACGTGCATTGTTTTATTGAAGGAATGTTGTTTTTCCTTAATACTTTGAAGTATATGTTTGCATTTGTATACTTTTTTATGTTTGTATGATGTTATTAAATGCTTGAATAGA

Function

GO: NA

KEGG:

id description
K04245 CMKLR1; chemokine-like receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142451 lncRNA downstream 36417 22930936 ~ 22931634 (-) True G123310
TU142432 lncRNA downstream 44026 22923826 ~ 22924025 (-) True G123300
TU142431 lncRNA downstream 44450 22923194 ~ 22923601 (-) True G123299
TU142428 lncRNA downstream 49504 22918328 ~ 22918547 (-) True G123296
TU142415 lncRNA downstream 78072 22889732 ~ 22889979 (-) True G123283
TU142487 lncRNA upstream 10802 22982342 ~ 22982609 (-) True G123337
TU142496 lncRNA upstream 21522 22993062 ~ 22993274 (-) True G123346
TU142498 lncRNA upstream 23439 22994979 ~ 22995225 (-) True G123348
TU142445 lncRNA upstream 30666 23002206 ~ 23003912 (-) False G123306
TU142444 lncRNA upstream 30801 23002341 ~ 23003912 (-) True G123306
XM_021624811.2 mRNA downstream 2602 22953581 ~ 22965449 (-) True si:dkeyp-84f3.5
XM_021624595.2 mRNA downstream 18281 22907086 ~ 22949770 (-) False LOC110538037
XM_021624604.2 mRNA downstream 18281 22907086 ~ 22949770 (-) True LOC110538037
XM_021624738.2 mRNA downstream 68531 22883978 ~ 22899520 (-) False im:7147486
XM_021624747.2 mRNA downstream 68531 22883978 ~ 22899520 (-) True im:7147486
XM_021624724.2 mRNA upstream 147842 23119382 ~ 23123886 (-) False LOC110538089
XM_021624700.2 mRNA upstream 147842 23119382 ~ 23126698 (-) False LOC110538089
XM_036942639.1 mRNA upstream 147842 23119382 ~ 23126698 (-) False LOC110538089
XM_021624691.2 mRNA upstream 147842 23119382 ~ 23128065 (-) False LOC110538089
XM_021624716.2 mRNA upstream 147842 23119382 ~ 23128065 (-) False LOC110538089
TU142062 other downstream 589891 22376153 ~ 22378160 (-) True G122972
TU142002 other downstream 810517 22120580 ~ 22157534 (-) False LOC110537842
TU142449 other upstream 33446 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 214100 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 308639 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 932299 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1187627 24159167 ~ 24161443 (-) True LOC110538705

Expression Profile