RNA id: XR_005035904.1


Basic Information

Item Value
RNA id XR_005035904.1
length 3975
RNA type mRNA
GC content 0.47
exon number 9
gene id kcnn4
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23077346 ~ 23119231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattttactgggtgactcacttacttgagtaactttctattaaggtatctatattATTTTACTCAAGTACgccaattgggtactttttccaccaccgtgcacacacacacacacacacacacacacagagagcgaaagaaagagagagagatatactttTTATGGCGCCCTCTCACCTCATAACCCTTGCAAATAAGAACAGCGCAATAGTCAACTATCATTGGTGCGCTTATCCCATGCCGCTAGTGGAGGTGTTCGCTGTTCGTGTTCAGGTGAGCGCGTACAGTTAGTTTTACAGTCCTTATTCCGCTACTTTCATGAtccacagagaggaggaggaggaggacctgggACACAGTTGGCCCATCGTGGTATACCTTCCCGCAATCCGGGGAAGAGCACGGACGGAGGGGAGGCTGGACAGGGAGAGGACGAGGCATCAGAGGACGAAAACACGGAGAGCGGACACAGCCGACGCCAACGCGACATGGAGATGACAACCCGAAATTTGCACCTCAACTCCAAAGTTGACAATTGCGATGGAGTGATCAACAGAAACGGCGGTGACATGACTGAGATATCTGTACCGCTGTCCCACCCTGGGAAGCGTATGCCTCAAATCGAGGGGGGCAATCTTTATAGATTGCGAGATAGAAAGGttttattggaggacaaaaagcGTCTGTGCGCTTGGGCTCTGGGCACCGCGCTGCTTGGGACACTGCTCATGATACTGCACGCGGAGCTGTGCCCGTTGATTTACCAACCAggCTCCCGCTATGCCTTTATCATCAACTGCTCCATCAGCATGTCCACTGGGTGTCTTCTGATTCTCATCGTAGCCTTCCATTATAAGGACATCAGGCTCTTCATCATTGaccacaaccaggtggactggcgCATCGCCATGACAAGCCGCAGGGTGCTGGGCATCTCCCTGGAGCTGCTGGTCTGTGCCATCCATCCCGTGGGCACCTACTGGGAGGTGGGTGTCCCTGCGCCCATCGCCAGGGAGGGGGTAGAGGTCAACTCCTCCAACTCGGCGCCGCTGTGTGTGTCCTCCCGCCACGGGGAGGCGCTGTTGGACACAGAGCTGCTACTGTCGGCACTGATGTTCCTCAGGCTGTACCTGGTCCACAGGACGATCCTACTGCACAGCAAGGTGCTGCTCAGTGCCTCCTATAGGAGTATCGGCTCGCTCAACAACATCAACTTCACGTTCCGCTTCGTGCTCAAGGTGCTGATGAACAAGTACCCGGCGCGCACGCTGATGGTGTTCATCTTCTTGTTCTGGCTCATCGCCTCCTGGATGCTCACGCTTTGTGAGAGGCAGACACAGGAGCAGACTGGTCGTATGGACACGGCTCTCTGGCTCATTGCCATCACCTTCCTCACAGTGGGATACGGGGACGTGTCCCCCAAAACCAGCTGTGGAAAAGTGGTGTGCCTCTTCACCGGAGTCATGgtaactatatggagtcatgGGTGTGGCCTGTACCGCCATGCTGGTGGCCGTCATGACCAAGAAGCTGGCGCTGAACAAAGGAGAGAAACATGTGCACTTCTTCATGATGGACATCCAGATCTCCAAACGGATCCGCCATGCTGCTGCCAACGTGCTGAGGGAGTGTTGGCTGCTGCACCGCACCAACCTGACCAAGGGCAACAGTGGAGAGCACCGCAGACACCAGAGGTGCCTACTGGAGGCCATCAGAGTATTCCGGCACCTGCGCCTTAAACAAAGGAAGCTGAGAGATTACGCCAGTGAGATGGTCGACCTGCCCAAGATGCAGATGATTATGTGCGACTTGAGTGCCAACTGGAACAACTCTTACCGGGAGCTGGAGCAGCGCATCATCTCCATGGAGCAGAAGTTAGATGAGCTGGGCCACTGCTTCCAACAGACCTCTGAGCTGCTGGCACAGGCCCTGCGCTACCGCAACCCTGAAATCAGgtgaCTCGTGGCTGTGTGGTTGGGTGAACCACACTCGCTGCAGGCCTTTCCCAAAGACTAAAGATGGATGCTACCAGCCTTCTGTAATTTCCATCAGACTGGGATGGGAATCCTCTTCCCCCCCAAAGCTGCATTTAACATTTGACCTGCGGCACCACTTGGACTACTGCCAGGACCAAGGCTGGCATCGTCTTCTGACCCAGCGGCTGAATGGACCCTACACAAAGACTCGTACTTGTAAAGACAAAAAAGAAAAAGGACTTCATTTTACTACAGCGGGGTCTGATATAGATGACTGGTGTATTTTTATCAGATGTGTTTAATGTACAAAGTATTGCGTTAACAATCTCAAGAACTCCAGTAACACGGCCTCTGGTTCTGTAGTTTGTGTCATCTCAGAGGGAGGGGCTCTATGGGTTCACCCACTGATGGCTCTGTAAAGTATGTCCCCTAACTCCTGCTATTAGTATTACAAGTTACATTGGAGGCTCCTAAACATAATGACTGGTTCCTATGGAACAAGAGGTTTAAACAGCGTTTTTAAATGTGAGGGACATTTCTTTGAATGCCACTCAGTATTGACAGCCTTCCTCAAAGCGTCTTTCAATTATACATTTTTCCACAAGTAAAACACAATGGTTATTCCACACATTTTTCCTAACAGGAAGTATAAAGCGGTGACATCCTCAGAGGCACCAGTGTATGAGACAACTGCCTTATTACTAGAGAGAGCTGCTGGTCTCTTATAAAATACACATCTCTGTTCTCTAACTGTTCTAATCCTCTCCATTTTGTTAGATTAGGAAATAAAACAATTTCTCTTCACACGGCCTCAGTCAGAGGGATAAACTGCTAGTCAGTTGCCATGACTCAACACTCAAACACTCCCTAAGGTACTGTGGAGTTACCAAAGTAGACTTTCGCATAAAGAACTAATCTAGACGGTTAAGGCCTGACATATATTGTTGTCTTAAGGATGATTGTATGGGGAAGCAGTCAGTTTACATAGTTAAGCTGTTCTCATAAAGATCAAGAGACAAGTGGCATAGCCTAATAAAGTACGCAGGCTGATATTTATTGGGACGACTCAtgtactggaggcagctctgcagagtggtcactatcTGGGACAGCcacagtcataaaatctgatttcaaacctaaccacactgctaaacaTGCCTAACcaaatttttgttttcatgaatttttacaatatagcaatttcgACTTTGCAGCTGCCCCATCTAGGGGAAAaccgctcagttctgcctccagggcaagactcacgacaataaacgtcaacctgcataAAGTACATGGAGACATTACTCACTGTTATTCTAATTCTGATGTGACAGCTCCCCCCAGAGGATATGTACATGCATGACAATCACACACCAGTCAtagacatgaatgaatgtcaaaCGACATCATATTCTTGGGTCTCTGTGGCAGCCTATGGGTAATACATCATCACAATCTGAATACTTTTGAAATCTTTTACCAAACAATACTTGTGTGACATGGATTGTTTTGGACTAGTAACAGCCAAATTATACTTACTACACAGGTAGTATTACAAGTGGCCAGTCTTTAAATGAGGGTGCATTTTTAGAACACAGCTGTCAATACATGTTGCACTCAAGTGTGAATGGGGAAATATGGGTCAGTGGCACAGCATTGTCTTATTTGCATAATTTATGTTATTCACTTTGTGAATCAACAAATTGTACTTGTTCTCCAGCCCCAATGGTAAGGCTGGTAATCTGGGGCATTACTAAATCAAGCACCTTGTGGGGACAACTATTCCCATGGTTGTATTTAAACTGGACTTCTGCATTTTCATTAACTGGAGTGAAGATATGTAattcttaaaaatatatattttgtttttttagaTTCTGCAAAAACAATGTGAAGTGAAACGTTTATAGGTTTTCTTTTGCCCATGATAAAACCATGCATTGTAAATACATTTTCTGGTCTTCCTGACAATTAAAAGCCATTGGTGATTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141621 lncRNA upstream 26252 23050783 ~ 23051094 (+) True G122593
TU141594 lncRNA upstream 64973 23010422 ~ 23012373 (+) True G122575
TU141589 lncRNA upstream 71719 23001935 ~ 23005627 (+) False G122573
TU141588 lncRNA upstream 72686 23002250 ~ 23004660 (+) True G122573
TU141585 lncRNA upstream 75657 23001192 ~ 23001689 (+) True G122572
TU141661 lncRNA downstream 8451 23127682 ~ 23127926 (+) True G122632
TU141666 lncRNA downstream 20821 23140052 ~ 23140544 (+) True G122637
TU141699 lncRNA downstream 66460 23185691 ~ 23199253 (+) True G122667
TU142635 lncRNA downstream 139588 23258819 ~ 23259033 (+) True G123471
TU142637 lncRNA downstream 141105 23260336 ~ 23260565 (+) True G123473
XM_021625038.2 mRNA upstream 7799 23055781 ~ 23069547 (+) True LOC110538306
XM_021624836.2 mRNA upstream 79972 22993751 ~ 22997374 (+) True LOC110538188
XM_021625050.2 mRNA upstream 219274 22856570 ~ 22858072 (+) True LOC110538314
XM_021625029.2 mRNA upstream 220668 22854739 ~ 22856678 (+) True LOC110538298
XM_021624466.2 mRNA upstream 532942 22534035 ~ 22544404 (+) True LOC110537974
XM_021624878.2 mRNA downstream 9005 23128236 ~ 23135855 (+) False LOC110538208
XM_036942756.1 mRNA downstream 9490 23128721 ~ 23135597 (+) False LOC110538208
XM_021624887.2 mRNA downstream 9716 23128947 ~ 23135597 (+) True LOC110538208
XM_021625084.2 mRNA downstream 29274 23148505 ~ 23151891 (+) True LOC110538332
XM_036942760.1 mRNA downstream 116989 23236220 ~ 23245933 (+) True si:dkey-238d18.4
TU141439 other upstream 266083 22810767 ~ 22811263 (+) True G122459
TU141081 other upstream 727410 22348583 ~ 22349936 (+) True apoc4
TU141079 other upstream 730731 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other upstream 730841 22342527 ~ 22346505 (+) True LOC110537939
TU140958 other upstream 1058531 22016662 ~ 22018815 (+) False G122030
TU143220 other downstream 705462 23824693 ~ 23825502 (+) True G123980
TU143245 other downstream 742686 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other downstream 742686 23861917 ~ 23881636 (+) True LOC110538497
TU143372 other downstream 1027630 24146861 ~ 24148593 (+) True G124121
TU143399 other downstream 1421773 24541004 ~ 24544226 (+) False LOC110538915

Expression Profile