RNA id: XM_021624691.2


Basic Information

Item Value
RNA id XM_021624691.2
length 5517
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110538089
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23119382 ~ 23129010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAagacgtaatgaatacaccccataATTCCATGTTTTGTACACCGATTGGAGTTCCAACATTTTGTAAATGCAGTGTAAAATGTAGCACCGTTCATGTAGTTCAGGCATACTTTTAGCTAatcatgttatatatatatatatatatatataacagaccTGGCATGCAGGAGAAACATGGTGTCACAACAATTTCAGATGGATTTTGAAATGTCCTCTAAATGAACCTAGAATAAATCATGTGAATTGGCTTCAGTGCACAGATTTCAAACCATACATGCATGTGTAATGAGCCTGTGCCATAAAAACCTTGTTATTTTGTTGTAGAGGGTTAATATACAATATTTAGTCTTATTTACATATACAATATTTAGTCTtatttaaatataaatatttagTCTTACACCCTGGTAAAAATATCAAAACTGTATTCCTCCGACTCGTCAGGAAAGcatgtagtttattaggctacagattacattaattatgatgaacttcagaGTGGTGAAGTGCATGGTAGTGCATCTGTAGAGTTGAAAATtagatggaaacccatttaacttgtatttttttattcagaAAATGGGAATTTAACAGCAAATTGTATTTTTACGCACAGTATTTTATCTGCAACAAATACATTTGGTGGGAAAATGCGCACATTGTTTTTATGCGGATTTTGGAATATTCACATGataatctgtcaccaattggatggaaacctagctagtgatgCAAAACTGAAGAAATAATAATCAAATAGAACCACGTGCATTTTTGTAGGCCTATATGGTATGATATCATGATCTAGTGCAGGAAGGTTTTATGACTATGTAATTGTCATTAGATTGTGCCATTAGGTTGTAGAGAAGATAAGTGTCCTACACATAACCTAAAAATAGTAATTTAGCTACTTAACAACAATATCGTCCTATTGTTACTAATTTAAATTCCTCACTTAGCTAATACAATAGTCCTAATAATATAATAAGTTGAAATGGCATCACATTCAAATCCTCAATTATTGTATGCCCTTATGGACAGGGGTTACATTATGGTAAACAAAGGTACAGTGTGTAGTTTCTACAGCAGTCTTTCAACTTGCAATAGAAGTATGTGTAGCCTAattatgaatgtgtttgtttatttgttagtTTTTTTGTAAATGTGTGGAATTCgtttaaataaaatatgaattcTGGGAGTTGTAGTATAGCGTTTAGAAAGATGGCCACTGGTGCATACTGGGAGCTGTAGGCTTCACACTGACTCCACCCATTCCTGTTAAAACAGGAAATAGAGAATAAATGATGGAAGCCAAAGAAGGGATCATTAACGTTTTAAAAATGACTTAATAAAAGGGAGCCAGTATATGGTTGCTATGGAGATGGCTGCTGAAGACATAGTGATTCAGGAGACCCTGGGGGCAGAGGTGGAGCTACTGGAGGATATGAACAAAGCCCACAAGCAGAGTCCACCGGACAGGGAACACTCTGAAAATCCCAACTTTATTTCTACTCCTGTACACTTGGAGATCCCCAGGTTTTCTGTGCCACGCCCGTTCTCCATGCCAGAGGACTCGAGTGACGATGACTGTGACCTGTCAGGGGACAGCATCTCTGCTTACGGCATGCATTCCATGGAGCTGGGGGGAAAGTGCTGGGAATGTGGCGTGCAATTCAAGCCTGGCCAGGAGTTGATCGAACACTTTGAGAGCCACAGGTCCAAGGTCTCAACGTCCTGCAACATCTGTCAGGTGACTTTCAGTCGCACAGTATCACTGGCTATGCACCTAGTCAACGCACacccaaactcagtcctccatTGCAGTAACTGCCAGCTGTTTTTCAGCAACTTGTGGGATCTCAACAAGCACATTGGAATACACTTGTTCACCGAGTTGTTAAATACACCCCTTGAGGACATCTCAAATAAGGACTTGAATAGCAGTGAAGAGACTTTAAATGGACAGTATACTCTACCTTCAGCCTTGGCCGTcaaacatgaggacaactcaaaTGATGTCTTGAATGGCAGTGAGGAAACTTTAAAGggacattatactgtaccttcagtGGTGGCTCTTGACCATGAGGACACCTCAAATGATGGCTTCAATGGCAGTGAGGAGACTTTAAATGCACAGTGTACTCTACCTTCAGCAGTGACCCTAGACCATACGTATAGCATGGAAAGCGATGGGAGAATGACAAAGACCAGACATaggctggaggaggaggaagatgtcaAACCAGACCCTTCCACTCTGACCCTAGGCCCCTCCATTCTGACTCCCTCACTGAGGATCCGTGTCAAACTGGAGAGAGGGGTTGAGGTTGATGGCGCCCCCCTCCAGTCGGATGAGGGTATCAGCGATGGAGAGGGGAGTGAACATAGCGAAGACACTGAGAGTGCAGGAGGAACAGACAACGACAGGTTAACAGAGAGCAGCGGAGAAACTGATATCGATGAGGAGGACATCAGGCTGAGTGAAGAAGAGCAGGAGGAAGTTAAAAGCAAACGGGAGGATAGGAAGAATGACATCCAGAGCGAAAAAGAGGACGAGGATGCTGAGATGCTTATTGACCAAGAGGGTGAGCCCTCCTCGTCTGAGCGGGAGTCAGAATTTGACCCAGAAGAGTTATCAGATTCTGACTCGGGGTCCAGCAGCACTGGGGAATCCAGTGGGTCTTCTTACACTCCTGTGCGCACACGGAAAGCCAAGACCCGGCCATCCCGGACTAAGCAGCCCCAGACCAAGTTGTCCCAGGTCAAGCCTTATTATTGCATCTATTGCACCAAAGGACCGTATCATAATATGGACTTTCATGTGAAGACCTGCAATATGAAGGACTTTCAATGCTCTTTATGCCAAGCCGTCTTCCCTACCGAGATGGCCATGTTGGACCATGAGGTTCGGACTCACTCTGAAGCCATATCGGGCCAAATGTACACCTGTGAGTTCTGCCGTCAGGTCTTCCCCGATCTGGCCATCTACAAAAACCACAACTGTCCTAAAAAAAACACATCCCCCCCATATGTCCCTGATCCCACTACGTGTATCCATTGTGGAACAGGGCCATTCACTAATATGGATGTCCATTTGAGAGGCTGCAGTTGGAAAGGTCTTACATGCACTGAGTGCAGGGTACTCTTCCATAATAGGAAGGCCCTGCAGAACCATAACGTTTCAGTTCACGGACAGCTTTCCACTATGTGTGCTGTTTGCGGCAGAGGGCCATTCACTGATATGGACTTCCATTTGAGGAGCTGCTCTAGGGATTGGTCCTTCCAATGCTCTGAGTGCAAAGTCCAATTTCCTTCAGAGAAATCCCTGGTGGACCATAATCTTCAATATCACAGTGCCACATCAAAGACCTCTGACCAAGGTGTCTGTGTTTATTGCGGCAGTGGACCATTCACTAGTCTGGACATCCACATGAGGACCTGCTCTAAACAGAAGGGCTTAAAATGCTCTGTGTGCAAAGTTTTTTTTCCTACTGAATCAGTCCTGGCTGATCATATGGTTTGCTATCATAGCACCCCATATCATGTCCATAGCACCCCATACCAAGTCCAGAGCATCCCATACCAAGTCCAGAGCACAGACTCAGAGACCCCTGAAGGTACCTGTCTCTATTGTGGCAGAGGTCCATTCACTAGTCTGGATATCCACTTGAGGACCTGCTCTGGGAAGAAGGGCTTCAAATGCTTTGTTTGCAACGTTTTCTTTCCTACAGAGACAGCCCTGGCCGACCATAAGGTTCTCTTTCACAGTATCCCATCAGAGACCCCTGACAAAGGTACCTGTGACCATTGTGGCAAGGGGCCATTCACTAATCTGGACAACCACATGAAGACCTGCTCTAAGAGGAAGTGCATCCAATGTTCTGTGTGCAAGTTTTTCTTTCCTAGTGATGTTCTGGCCAACCATATGATTTCCTATCACAGTACCAAATCCCGAGTTCAGAGCCCAGTCACAGAGACGCCTGACAAAGGTGCCTGTGTCCATTGCGGCAGAGGGCCCTTCACTAGTCTGGAACATCACATGAAGTACTGCAATAAGCAGAAGGGCATCCAATGCGTTATGTGTAAAGCTTACTTTCTTACTGAGGGCAGTCTGGTGGACCATATTGTTTTGGCCCACGCTGACAAGCTGGTCACCCAAGCTGGTGGGTCCTCCGCTACGACTTTCACCTTCGTACCCATGGCTATCTCTACAACCTCAGGCCGGCAGAGCCCCAGTAGCTCCACCCTGATGTGTTGCAGTAGTGGAAATAAGGAGCTGAAACGACTGCCCCCAGTCCCTGTGGCTGATCAGGGCCTCAATGCAGTTGGACCGCTAACAGCTGCTGGACAGTCTACTGTGTCTCTGCCTAGAGTGATGCTGTCTACCACCTCCTCTTCCCAGCCAGCTGTTCCTGTGGTGGCCACCTTGCTCTTTGACAACACTGGTGGTGGTGGTCCAGTGAAAATGGCCAGGCTGGTCCCAGTGGCCCCACAGACCAACCCTCCCAAACCTCAGGTCACGGCACCCACGCAGACTAACACAGCAAAGCCCCTTGGGCAGTTCTCTAACCTTCTGCAACAGACTGTCCATCAGGCAAAATCTGTCCAACAGCAGACACCCAGGCCCATTGCCCTAGCCATGGACCCTATCAGATCCCCCACCACCCCATCCCCTAGACCTGTCTCAGCCTCTGCCCCGGGGAAAATCACCATGATCCACCTCTCACCTGTCCATACCCCCCCTCTAGCGCAGTCTTCCCCCCTTACCCATGCCTTTGCCCCAGCCCCTCTAAGCATCATGTGGATGTTTGTGAATAGAAGTAAGGAGCTGGCCCTGGAGAAACGCATGAAGATGAGCTGGCGCTCCAAGTGCACCTACACCTGCCGCCAGTGCGGCGCCGTCTCGCAGCAGCCCTCGCTCAGTGTGAAGCACCGCTACCTCCATCGGGGCTCCCGGCGGTACCGCTGCACCTGTGGTAGGTCGTTCCTGCGGCGGCTGCACCTCCTGCGCCACTACCTCCAGCACGCCCAGGCCACCCGCTACATATGCACTGCCTGCGGGGAGACCTTTGACGGGGCAAAGTGCCTCGCACAGCACATGGTTGGAGCTTCCAACACGACTCGATGTCCAGGTGACAGCATAACTTTGAAGTTGAGGAAAGAGTGCCGGATGCCCTTCTCCTGTCACTGTGGGCAGGTGTTTTGTAGGCCCGCTGCTTTTCTCTGGCACAAACTGAAAAACACCCAAAGGACTTAACACTGAAATGGGCCCACAGCAGGGCCCTATTCAAAGCAGTGGTTTTTCCATGGCTCACACAGACAGGCAAGCCTATCATTTACTATGCTTAGGGATAGAAGAGGACAATGCAGTTTGTGGACTTGTTTGACTTTTTTCACTGTGAATGAAAGATGATTCCTTATAAAATAATCTATGTATGTATTGGTTTAAAATGTGTTTTCACTTCCACTAAAACATTGTTTTTACCAAAAATACAATCATATTAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142551 lncRNA downstream 5251 23113885 ~ 23114131 (-) True G123399
TU142540 lncRNA downstream 25019 23093813 ~ 23094363 (-) True G123389
TU142517 lncRNA downstream 64309 23054855 ~ 23055073 (-) True G123367
TU142515 lncRNA downstream 65720 23053442 ~ 23053662 (-) True G123365
TU142513 lncRNA downstream 68453 23050365 ~ 23050929 (-) True G123363
TU142582 lncRNA upstream 42733 23170798 ~ 23171042 (-) True G123429
TU142609 lncRNA upstream 102074 23230139 ~ 23232495 (-) True LOC110538290
TU142850 lncRNA upstream 108289 23236354 ~ 23236889 (-) True G123647
TU142867 lncRNA upstream 124340 23252405 ~ 23252666 (-) True G123660
TU142863 lncRNA upstream 124717 23252782 ~ 23255254 (-) True G123656
XM_021624985.2 mRNA downstream 147842 22968051 ~ 22971540 (-) True LOC110538268
XM_021624811.2 mRNA downstream 153933 22953581 ~ 22965449 (-) True si:dkeyp-84f3.5
XM_021624595.2 mRNA downstream 169612 22907086 ~ 22949770 (-) False LOC110538037
XM_021624604.2 mRNA downstream 169612 22907086 ~ 22949770 (-) True LOC110538037
XM_021624747.2 mRNA downstream 219862 22883978 ~ 22899520 (-) True im:7147486
XM_021624901.2 mRNA upstream 48395 23176460 ~ 23191329 (-) False LOC110538224
XM_021624911.2 mRNA upstream 48395 23176460 ~ 23200956 (-) True LOC110538224
XM_021625016.2 mRNA upstream 96424 23224489 ~ 23233768 (-) False LOC110538290
XM_021625073.2 mRNA upstream 134398 23262463 ~ 23267059 (-) True LOC110538325
XM_021625104.2 mRNA upstream 147973 23276038 ~ 23278328 (-) False hspb6
TU142449 other downstream 113570 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 741222 22376153 ~ 22378160 (-) True G122972
TU141996 other downstream 961848 22129614 ~ 22157534 (-) False LOC110537842
TU141995 other downstream 963653 22129614 ~ 22155729 (-) False LOC110537842
TU142589 other upstream 57575 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 152114 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 775774 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1031102 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 1141161 24269226 ~ 24270136 (-) True G125003

Expression Profile