RNA id: XM_021624887.2


Basic Information

Item Value
RNA id XM_021624887.2
length 1998
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC110538208
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23128236 ~ 23135855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTGTTTATGTTTGGAATTTGAGCACTGCGGGACACTACAAAAACGTATGTTTCGCAATTCCGCCATTGGCATTTCTGTTGCCGGAAGTGCGCCTACCCACCTGCAGCTACTTCCGCTTTTAAGAACCCTGAATTGACCACAGTGTGCAACATGTCAGAATCTGGCCACAGTCAACCTGGCATGTACGGacagggaaggaggagaaggCGACGCCGAGACAGGGATGTGGGTCCCCCGGGGCAAAACCTCTCTGGTCCCAGTCGAGATCGGGAATATGTCCCCAGAGAACGCAGGGATGGCAGTGAGGAGCCTCCAGGACCACTCCTTCAGAAGACCCCCATCATCCTGGCCAAACCCCCTGGAGAACGGTCCAAGCCTTCCCAGAGTGTACCCACCAGTGGAGGCCAGGCCCTGGAGAAGCCCATCATGCTCATCAAGTCCAGGGAGGACGGGGGGAAACCAGGGACCCCTCCTGAGGTGGCTTCCCCGGCCTCTGGCTCTGGGGCCTCAAAGCTAGAGAGGGAGGGCCAGCGCCCTACCCAACCTGTCTACCAGATCCAAAACAGAGGCATGGGAGCAGCTGCTTCCAGCGGTGCTGTCGACCCTGTGATTGGCCAGACCAAGCTCGTCCCCCCTGAGAAGATGAAGCACAGCATCAAGCTGGTGGACGATCAGATGAACTGGTGTGACAGCGCCATGGAGTACCTAAGGGACCAGACAGACATGTTGGTAGTGGGAGTCATTGGCCTGCAGGGAACAGGGAAATCCACCATCATGTCTCTCCTGTCTGCCAACGCACCTGAAGAAGACCAAAGgggcTATGTGTTCAGGGCTCAGACTCAGGAGatcaaagagagaggagggaaccagaGCACTGGTATTGACTTCTACATTACCCAGGAAAGAGTAATCTTCTTGGACACACAGCCCATTCTCAGCCCCTCCATTTTGGATCACCTCATCAACAACGACCGCAAGCTGCCTCCAGAGTACAACCTCCCTCACACCTATGTGGAGATGCAGTCTCTTCAGATCACTGCCTTCCTGTTCACAGTGTGCCACGTGGTCATTGTGATTCAAGACTGGTTCACTGACATCAACCTCTACAGGTTCCTCCAGACAGCAGAGATGTTGAAGCCCTCCACCCCCTCAGCCAGCCACGACAGCACTGGTTCTTCTGGCAACGAAGAGGGATCAGAGTACTACCCTCACATAGTGTTCCTGCAGAACAAATCTAGTCGTGATGAGTTCTGTCCCAGAAACCTGAAGAAGATGCATATGGCAGTGGACAAGCTGATGGCCCACTCCCATCTGAAATACAAAGGCACGTTGTCCATGCTGGACTGTAACATTTTCCCTGGCCTGGACCGCGACTACCTGGAAACAGAGGTCAACATGTTCCTGCTGCCCCTCATGGAGAATGAGGGGGAGGACGCTCTAACCAAAGCAGGGTCCGGGGCcgcccccctcttctctctcctcccggGCTACAGAGGACACCCCACCTTCTCCTCTCAGGTCTCCAAGCTCCGCAGCCAAATCCTGGCCATGTCCCGCTGTCAGCTGTCACACACCATTCTCACAGAGAAGAACTGGTTTCACTATGCAGCTCGCATCTGGGACGGGGTGAAGAAGTCCTCAGCCCTGTCTGAATACAGTCGTCTACAGGCCTAGCAACAATGTCAACCTGTTGTTATGAATATACTGGAGGAAATGGATGTCCCTGTCCTACATGAGGACcagaagagacagagtgaggtGGGTCTGAAGATGGACAGTGCCAGTACTATTGGGCTTACAGGTTCAGTCAGTGGTGATATGAGGTGCTTGATGTTGAGGAGAGgtccatctcatctcatctcatggAGCTACAGATAGTTCAACTTTGGTGTCTTTGTaacagagggagaaaaggggacAGCTGATCAGATTCAGGTGTCAATGTGACAGTAAATAACCCTGCTAAGTGTTAGATTCAGATGGTACAGAAAATGA

Function

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
K18735 SMG9; protein SMG9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141661 lncRNA upstream 1021 23127682 ~ 23127926 (+) True G122632
TU141632 lncRNA upstream 9973 23118185 ~ 23118974 (+) True kcnn4
TU141659 lncRNA upstream 11739 23116765 ~ 23117208 (+) True G122630
TU141645 lncRNA upstream 30988 23097430 ~ 23097959 (+) True G122617
TU141621 lncRNA upstream 77853 23050783 ~ 23051094 (+) True G122593
TU141666 lncRNA downstream 4455 23140052 ~ 23140544 (+) True G122637
TU141699 lncRNA downstream 50094 23185691 ~ 23199253 (+) True G122667
TU142635 lncRNA downstream 123222 23258819 ~ 23259033 (+) True G123471
TU142637 lncRNA downstream 124739 23260336 ~ 23260565 (+) True G123473
TU142630 lncRNA downstream 131767 23267364 ~ 23268261 (+) False LOC110534494
XM_036942767.1 mRNA upstream 9716 23077346 ~ 23119231 (+) False kcnn4
XR_005035904.1 mRNA upstream 9716 23077346 ~ 23119231 (+) False kcnn4
XM_036942781.1 mRNA upstream 9716 23086399 ~ 23119231 (+) False kcnn4
XM_021625038.2 mRNA upstream 59400 23055781 ~ 23069547 (+) True LOC110538306
XM_021624836.2 mRNA upstream 131573 22993751 ~ 22997374 (+) True LOC110538188
XM_021625084.2 mRNA downstream 12908 23148505 ~ 23151891 (+) True LOC110538332
XM_036942760.1 mRNA downstream 100623 23236220 ~ 23245933 (+) True si:dkey-238d18.4
XM_021624823.2 mRNA downstream 110955 23246552 ~ 23251865 (+) True hsc70
XM_036942828.1 mRNA downstream 117237 23252834 ~ 23255257 (+) True LOC110538364
LOC110538320 mRNA downstream 125506 23261103 ~ 23261862 (+) True LOC110538320
TU141439 other upstream 317684 22810767 ~ 22811263 (+) True G122459
TU141081 other upstream 779011 22348583 ~ 22349936 (+) True apoc4
TU141079 other upstream 782332 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other upstream 782442 22342527 ~ 22346505 (+) True LOC110537939
TU140958 other upstream 1110132 22016662 ~ 22018815 (+) False G122030
TU143220 other downstream 689096 23824693 ~ 23825502 (+) True G123980
TU143245 other downstream 726320 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other downstream 726320 23861917 ~ 23881636 (+) True LOC110538497
TU143372 other downstream 1011264 24146861 ~ 24148593 (+) True G124121
TU143399 other downstream 1405407 24541004 ~ 24544226 (+) False LOC110538915

Expression Profile