RNA id: XM_021625084.2


Basic Information

Item Value
RNA id XM_021625084.2
length 1383
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110538332
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23148505 ~ 23151891 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTTCAGCTCCAAGTCAAAATGTACCTTATTGTACCCATCCTTGTGAGCTTGCTACTCCCCAAAGCATATTCACTCAAGTGCTTTGAGTGCACACCAGGAGAATCGGGAGCATGCACGGACAAGGAGACTGACTGTCCAACCCAATGTGGAAACACGCGGATTACATCCTATATGGGTGGTACAACATTATCCGATGTGAACCTGAAGTCTTGCTCCGTGCCTGAACAGTGTCTCACTGCATCGGTGAATTTTGGAATGATGCGCACTATGATCGCCAGCACATGCTGCAATACAGACCTCTGCAACTCCCAAAGCATCCCTGAAACTACTAAAACCACCCCTAATGGCAAGAAGTGCTTCACCTGTACCGGAACGGACTGCACGAGCGCTCTGAGCTGTGTGGGAGACGAGGACCGCTGTATCTCAACAATAGTGAACATGGGTGGCGAGAAGATGACAATGAAAGGATGTGCCTCCAAGAGCATCTGTGTGGGAGACATGTCAGGAGCGCTGGGGCCCACCATGGGCATTGACATGAAGTGCTGCGAGGGAAACCTGTGTAACAACGCCCAGAGCATCGGACTGAGCCTCCTGCTCCTGGTGACATCCATGGTCTCTGTGGCCCTGTTCCACTGAGAGACACCGTGCCTTCACCTCCttacctccccttctccccccccttTCCTCTTCTGGGCATTGCCTCATTATATTTATTAGTTCCATCGTAACAGGAGCCTCCCTGTCATTGTCCACCCCCCATCTCCCCACTCCCCAGTCTCCCCACTCCCCAGTCTCCACAATACACCTGTTGTGTGTATTAATAATGGATTTGATTGAATAGCCCCTTTCGTTAGACACTCCCTTGGGGCTTCACATTGTGTAGgattaacccaacccctccacccccactAGCGTAATGCTGCAGCCACCTGTGGAATGCACTATAGCCATTTTATTTTAGGGACAGCTCTCATAAAAAAAACACACCCACAACCCACACCCATAACCCCTACACATACCCACCCTCTTCTCTCTTCAAGGCCCTGTGAGTCAGTGAGGCATGGATGTTTGGTGAGGCATCTGCCAATCTAAGCAAGTGTTGTACATTGCTTCAAATCATTGGCATTGTTAGCTttcacattattttaacattctgtACAACATAAAAAGGCTATTGAATCCCATTTTTAACATGGCAGAAATATACTTACAATTAAATATGTCACTGGATGTGTAAAGTGTTAATGTATTTCCAATGCCTAATTGATGAACAAGATGAATTTTGTAAATTAAAGTATATGAATTACTGAATAGATGAGCTGACTATTCTCACAACCTCCTTCCCCCTCCAATAAGGCAacgaataaatacatttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141666 lncRNA upstream 7961 23140052 ~ 23140544 (+) True G122637
TU141661 lncRNA upstream 20579 23127682 ~ 23127926 (+) True G122632
TU141632 lncRNA upstream 29531 23118185 ~ 23118974 (+) True kcnn4
TU141659 lncRNA upstream 31297 23116765 ~ 23117208 (+) True G122630
TU141645 lncRNA upstream 50546 23097430 ~ 23097959 (+) True G122617
TU141699 lncRNA downstream 33800 23185691 ~ 23199253 (+) True G122667
TU142635 lncRNA downstream 106928 23258819 ~ 23259033 (+) True G123471
TU142637 lncRNA downstream 108445 23260336 ~ 23260565 (+) True G123473
TU142630 lncRNA downstream 115473 23267364 ~ 23268261 (+) False LOC110534494
TU142629 lncRNA downstream 118897 23270788 ~ 23277132 (+) True LOC110534494
XM_021624878.2 mRNA upstream 12650 23128236 ~ 23135855 (+) False LOC110538208
XM_036942756.1 mRNA upstream 12908 23128721 ~ 23135597 (+) False LOC110538208
XM_021624887.2 mRNA upstream 12908 23128947 ~ 23135597 (+) True LOC110538208
XM_036942767.1 mRNA upstream 29274 23077346 ~ 23119231 (+) False kcnn4
XR_005035904.1 mRNA upstream 29274 23077346 ~ 23119231 (+) False kcnn4
XM_036942760.1 mRNA downstream 84329 23236220 ~ 23245933 (+) True si:dkey-238d18.4
XM_021624823.2 mRNA downstream 94661 23246552 ~ 23251865 (+) True hsc70
XM_036942828.1 mRNA downstream 100943 23252834 ~ 23255257 (+) True LOC110538364
LOC110538320 mRNA downstream 109212 23261103 ~ 23261862 (+) True LOC110538320
XR_005039445.1 mRNA downstream 115268 23267159 ~ 23276092 (+) False LOC110534494
TU141439 other upstream 337242 22810767 ~ 22811263 (+) True G122459
TU141081 other upstream 798569 22348583 ~ 22349936 (+) True apoc4
TU141079 other upstream 801890 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other upstream 802000 22342527 ~ 22346505 (+) True LOC110537939
TU140958 other upstream 1129690 22016662 ~ 22018815 (+) False G122030
TU143220 other downstream 672802 23824693 ~ 23825502 (+) True G123980
TU143245 other downstream 710026 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other downstream 710026 23861917 ~ 23881636 (+) True LOC110538497
TU143372 other downstream 994970 24146861 ~ 24148593 (+) True G124121
TU143399 other downstream 1389113 24541004 ~ 24544226 (+) False LOC110538915

Expression Profile