RNA id: XM_021624911.2


Basic Information

Item Value
RNA id XM_021624911.2
length 3617
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110538224
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23176460 ~ 23200956 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATTTTCTATCCACATTCAGAAAGGAAATTGGTCTGTACGAGGAACAAGACTCTAGACACCCACAGGGTTTTGATGGTGATAGCATCGAAGGAGCCGGCTACAGTCAGGAATACAATAAAGTGTTACAGCATTTGTGTTCAGCACATTCTTTCCTTTAATCTGTTAATTATTCACTGTTGCATTTGACACTTAGGCATCTTAATGGGTATGTTTTAGTCATTGCATTCAGGGGCTATACCCGTTATCTATGTATGAGGTTCTACATTTAGATCTCTTGTTACTTCCTGATTGAGTTACTGCTCAACTTGATTCGAAAAGCCCCACATGACAAGCGAGGGTGGGTCTATGGCTCTATGTTGAAACACTTTCTCACCATACACATATTTAATTGAAGACCAGATATTGTTACAAGGTCCAGCACTGAGAGGAGGTGATGGGGATTGAAAAATTACCGTTGCTTTTTCTTATTCATTGCATTTGGCTTGGAGTGTTGGGAGTTGATACCTCGTCATGGACTGCTGAGGTGCCCGGCTCAGTCTCCGGCCTGCAGGGCTCATGCATCGTGATTCCCTGCTCATTCAACTACCCAGAACCAAAGATAAAGCCCTCTGAATTCACTGGCATCTGGTTCAAAGACACTTCTGAGGTTATCTACCACCCAGACAGCTCCAACGTCATCACAGACTACAGGGGTCGTACAAAGTTGGTAGGAAACCTCAGACAGAAGAACTGCTCTCTCAGAATCGACCCCCTCCATAGCAGTGACAAAGGACCCTTTACTTTCAGGATTGAAATCAAAGACTATAACAAGGCTTCATACAAAGATGACAGAGTCTTCATTACAGTGAGCGACTCTCcagaccccctctctctgtcagtgaaGGAGGTGGTGAAGGTGGGGGAGGAGGTATCTGCCTCCTGCTCTGTGTCTCACTCCTGCCCATCTGATCCCCCGCTCATCACCTGGAGCCACTCTGGAACACCCAGCATCCAATCACAGCAGCAGACCAAGGGCCAGTGGGAAGAGACATCAACCCTGACCTTTAGATCCAGCAACGCTGATAACAACCAGCCTCTAGTCTGCACAGCAGCATACAGGGGAGGGAAGACAGTGAGCAGCTCCAAGACGCTAACTGTCAAATATGCCCCAGTGGATGTGAAGGTTAAGGGAGTGTCCAGTGTGAAGGAAGGAGACTCTGTAGAGCTGAGATGCTCCAGTGACAGTAACCCTGCTGCCAACAGCTACCATTGGCACAACAGCAGAGGACCTCTGCCCACCACTGGACCCACACTCACACTGGAGAATGTGACCAGACTCACTGAAGCCATCTACTGCACTGCCATCAATACAGAGGGACTAGGCGAATCCAGCCCACTGAAGCTCAACGTAGAGTACTCCCCTGAGATCAAAGTGGACTCTGCCTGCACTTCAGACATCTCTATGGTAACATGTCTGTGCATTGTGGATTCAGAGCCCCCCAGCACTGTGGAGTGGTCTCTTCCAGCAGGACACCTGCCCAGTACCAGGGTGGAGATGCATGGGTCAGTTACCGTGGTTACCCTACAGAGGGCACTAGGCTTCTCAGAGACCATCCACTGCCATGCCAGCAACACACAGGGCAATGCCAGCTTGTCCTTCACTGTGTCCACAAATGATAAGATGTCGATGCTGTACGTTTCAATTGGTATTGCTgcattagtggtggtggtaatacTAGTTCCCATGTCAGCTTGCCTTTTGACTAAGAAGGGTGGGAGGAGTCATAGTGACCTGCCAGTAGCCAGTATACAGGACATGGATGCAGCCAAGTGTGCTTCCTCAGATCCCTCAACATCAAGgaaagagcagaAAGACACCAGCAGTGAAATCCTCACAAACTACTACACCAACGATCAGCTATATGGCAACATGGAGGCTGAAGAAGATGGCGACCCATGCGAATGTGTTGGTGGAGACGATGCAATCTATGGTAACATTTGAACACAACAAGAAGCATGTGGGAGTCAGCTGGCTCAGAGGCCATTGTTCTTAGTCTGTCAAAAGCTCCAgtaaaatatttacattttaacCCAATGTAGCACAGCAGCCGACTGCTTATTTCTTAGCTTTATTGTTAATATGGCTAAAGAATATAGTACATTCTTATTTGTGTTGTGGCTTGTGTTGTGGCTTTCACAAGGCTTTTGTTTGTATCTATGGCTTGGGTGAATCAAAATGAACCTGATTTGAATGGCTATACAGTTATAATTATTGggaagtgtatatacagtatattattgttTTTGTGTTGCTCCTTTCAACTGTAATCCACTTATGTGTAACTGACATTCAGGTCAGCACAGTGCTTCTGTGGTCCCCTTGaatgtacagagagatacagtatagtgtcATTTGTCAAAACAGGCCATAttgagatatactgtatgtacttgAGATGGAGAATACAACGATTGTAAAGTAAAGTACCTTGAACATTTTCTCCAGATCAGATTGAATATGAACATGTGTAAATGTTCAACAACAACAGTGATCAAATGAAAAATATCTGTGTTTCATTGCATTTTAATATAGTCTGTAATGTTTGTTTCTGAATATCCCAATCTACTAGCGAGTTATTTTTCATCCTTTATGTTCTTACTGGGACACGCTGATCCACATTGATCTAATGTGTGGGAAAAACAAACATCTATTGTTATCATAAATCAACTTCAAGTACTCAAAGAAGGTAAATGTCAAGCAGAAGTAATTGATAGTCACCAATGAGCTGCTGTCTCCACTTGTCTTCCTCTTCTCAGGGGTCTTCACTGGttatcacagccacaaagtcataaaccccaccTATATCTACAAATTATCTCATTCACATCTGCTTTTAAACCCAACTCTAACCttaaattaaaaacaaaacacatttttgttttcatagaTTATAAGGATATAGTCCGTTGACATTGGGGCTGTGTTATCTAGTTGAAACTCTTCACAGGTCGTCGTGGCCTCTGTAAATCAACACATCTCCTCCTGTTGGTTCATAGAAGGTATTACATCATATGTTTACGTGAAATGGATTGAGGATTGATGAGCAAGAGAAGTAGAGGACTAAAATGTGAACAAACTTAATTAATGCACTACCAGTTCTGTCTGGTCTGCTCTAGATTCACATCAAAGATTATCATGACGATTTTGTTGTAGATTTGGATCACAATAAATTGTGTTGCAGTAAAAGCCCATCTAGAGAATCTATCCCAAAGTGATCCCCTATAAAGTTATTTTTCTCTGAGTACAAACAGTCTAAACCATCTACCATATAAATGATACACAAGGGGAATGttgcttattttttattttacaatacattctggaactttgagggtttatgacacAGCCCCACTAGGATCTCTATGGCGactctgatccaaccattaatacATACATTGCTATGctaagttcaatatgtagctagatgtagaaggcaaATGTTAACTAGGTAACGTGtcccatgaatggaagttaggccagcaagcaagcattttagccaggtagcctaggacaacaaaataaagtgtgtactgtatgacagagtgatagattgtttcgtcaacatgaaagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142582 lncRNA downstream 5418 23170798 ~ 23171042 (-) True G123429
TU142524 lncRNA downstream 52387 23123784 ~ 23124073 (-) True LOC110538089
TU142551 lncRNA downstream 62329 23113885 ~ 23114131 (-) True G123399
TU142540 lncRNA downstream 82097 23093813 ~ 23094363 (-) True G123389
TU142517 lncRNA downstream 121387 23054855 ~ 23055073 (-) True G123367
TU142609 lncRNA upstream 29183 23230139 ~ 23232495 (-) True LOC110538290
TU142850 lncRNA upstream 35398 23236354 ~ 23236889 (-) True G123647
TU142867 lncRNA upstream 51449 23252405 ~ 23252666 (-) True G123660
TU142863 lncRNA upstream 51826 23252782 ~ 23255254 (-) True G123656
TU142870 lncRNA upstream 63347 23264303 ~ 23365923 (-) False G123662
XM_036942638.1 mRNA downstream 47450 23119382 ~ 23129010 (-) False LOC110538089
XM_021624708.2 mRNA downstream 47709 23119382 ~ 23128751 (-) False LOC110538089
XM_021624675.2 mRNA downstream 47756 23119382 ~ 23128704 (-) False LOC110538089
XM_021624683.2 mRNA downstream 47756 23119382 ~ 23128704 (-) False LOC110538089
XM_021624716.2 mRNA downstream 48395 23119382 ~ 23128065 (-) False LOC110538089
XM_021625016.2 mRNA upstream 23533 23224489 ~ 23233768 (-) False LOC110538290
XM_021625073.2 mRNA upstream 61507 23262463 ~ 23267059 (-) True LOC110538325
XM_021625104.2 mRNA upstream 75082 23276038 ~ 23278328 (-) False hspb6
XM_021625096.2 mRNA upstream 75082 23276038 ~ 23278785 (-) True hspb6
XM_021625116.2 mRNA upstream 78160 23279116 ~ 23281851 (-) False LOC110538355
TU142449 other downstream 170648 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 798300 22376153 ~ 22378160 (-) True G122972
TU141996 other downstream 1018926 22129614 ~ 22157534 (-) False LOC110537842
TU141995 other downstream 1020731 22129614 ~ 22155729 (-) False LOC110537842
TU142857 other upstream 79223 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 702883 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 958211 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 1068270 24269226 ~ 24270136 (-) True G125003
TU144456 other upstream 1123624 24324580 ~ 24324836 (-) True G125043

Expression Profile