RNA id: XM_021625005.2


Basic Information

Item Value
RNA id XM_021625005.2
length 3025
RNA type mRNA
GC content 0.44
exon number 7
gene id igflr1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23374879 ~ 23379768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCAAATTTGCATGGGGCTGAAACCAGCGTTCAGTATATAACGAAGAGATGCTCATGTTTCCGCTCTAACATTATGAGTCTTTGTTCCAAAGGCGGGAAGGAAGGCAACAACAGTTTAAGTCTGTATTTTATTCGAATTGGGCGTCTCCGCGCTGAAACTATACCACCAGAGAAAACAGCCGATCGAGCGAAACACCTCCTACTTTATGTAGCCCTGATTCTGTCTGGCCAGAAGTAGTATGACATTTCGTCCAGACAGTCTAAAAATACTGAAACAAACAaaccaattgtgcgctgccttatgggactccagtcacggccggttgtgaaccagggtgtctgtgggGACGCCTCCAACACTGAGACGCAGtgcagaccgctgcgccactcgggagccacagGCTTCTCTTAACAAAATGGGCCACTATTCTGATAATTGCTCTGATGACTTGGATACATTTTGGGATGAGTCGAGAAATAAATGTGTGCCATGTCATCAACATCCACAGCATCCGATCCAACCAGCTGCCCCCCAACTCATCAAAAGCTGTCCGAATGCAACATCACGACAGACACGCAATGCTGCGGATCGAGGGACCAGACAGGCTGTCGGGAAGGAGTCCTGGGTACTACGACTCAACAGGTGCAACAGTCAACAATGTTAAAGGTCCAAATGTCAACATCAAATCCCACCACAGCCAAACACACTGATCAAACCATCAGACCACCAGACGTCAACCATAAGACTGCATGGATAGTGCTTACTGTCATCTTGGTTCTCGCTGTACTTGCATTTCTCTTATTCATCTATATTAAGAAGAGAAGGGGAAGATCAAGAGCCTTTTGCATCAGAGGTAAGGAGAATAAGCCATGCTTCATGGTCAGCCTTAAAGACTGCCTCCCATCAGACAATATCCTGTACACCAACCAACAGTCATGGACTAGTAGAAGAACAGCAGCTGTCAATGAAGAGGTTGCTCTCCTACAGTCAGAGACAAGGAACCTAGAGGACATTTTGAGTCCTAACCTCCAGTCTGCGCCACTGCAAACGGTTCTGGACAACCTGGATGTTCTAGAGGAGCTTGTGATCCTGCTGGACCCAGAGATCCCTGGGGTAAAGAACACCAGCCACCTAGCATCTCGCTGCTCCTTCCCCGCCACCTGGATTACCTACACCTACTCCATGAGGGACAGCAAGAGCCCCCTGAGGGCCGTGCTGGAGGGGGTCACCACCAAGCACCCAGACTGGACTGTAGGACAATTGGCCAGGCTGCTGAGAGAGATGGACCGGAACGACGCAGTGGTGGTGCTCACCAAACTCACCTTGTTTAAGGTTGTCTAGTCTGGGTGTGTTTTGTGTTGGGTCCGGAAAAGATGGCTCCATCCAGATACAATCACAAGTCTCTACCACCTGCAAAGGCACTGAGATATAAcaggagggccagtaggaggcatgCTTTCCTTGGGGACCCCAAAGTCCCAAGGCAGTGATTGGGAACACTGTTCTTTTGCATTACGGTTCAAATAAGATATTTAACTGTGATAACATGGCACTTATTACTTAAAGCAGggatgttaaccccggtgtcctgaaaAAGAGGAGCCGCACACTCTAgtagctcagatgcaataatgtaataacctaataaccaacgtttcgacagacaagctgtcttcatcaaggtataatgacaaacacggtggggtgactagtttatatagtgtcaaaggacacacacGTGTCTGTAATCATGACCGGGTGTGGCTTGATATCGTTGGTTCATTTTCAGATATATATAGAACATACAAAAACATGAATCATAGATACAATTTTGCTACATCGGCCTACAAACCTATACAATGAATAGTAAAATCACAaaaatggcttcagatcaaagtccaggcagcctctcgttttaacaataaattgtcgaggtcccccccacccccctctcctagTGAGGGTGACGTGTTCGATGCCGATATAACGTGAGTACGAAATCGGGTGGTTCACTTCCAAAAAGTGTGCCGCAACTGGGTATGTTGAGTTTTTGCACCTAATGGTGCTGTGATGCTCTGAGATCCGTAGTTTTAATTCGTGCTTCATTTTACCActaggacaagttataagataaacaACACGTTTGATTGGGATCCGTTTCCCTGGTTGgggcttttttatttttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacaggttacctgcctgttcagggtcagaacgacagatttgtaccttgtcagctcgggggtttgaatttcaatagctccttggtcatgtgacttcaaacaaggttcagaatgtccactcagtGTCCCTACACATTGCACaacctttagtttgtccattttaatCTTACATGGTTTTACATGAATTTATAAAAAtgtagaatttcaatagctccttggtcatgtgacctaatgtccgctgactacccttctatattgcacactcttgtttgtgtactgtaaaaTCACGTGGTGTAACATACCTTTTTCATAATTTCACATttgcaatagctccttggtcatgtcaatTACACACCTAAGAAGCATGCAGTAGATATACACCCATATTGCATAACCTCTAGTCGTGTATCTTCTATATTGTTGTACATTATTATTAGTTTGACAATTAGGGGGTTCAGTCCAGTGTTTACCCTTTTCTTTAATGTTTATCTACAATAGTTGGTCGTTCTAAGTActtattttccctgttttttatttttcctaTTGTGTATTTGGTAcacaataggagagagacagataatatcTCCTTTCGTCGTTAATATCAACCATAAAGGAAAGGGGCAAAGTACGAGAGTCatgctattaattgtccaaagcaGGGATGGAGCGGGAGCTAGTGAGGTAAGCTGCAGTGGGTTTGCTggtcaatacatatactgaacatgtAACCACAGTATTGGTGGCCAGTAAATCAATTAATAAAAATGTTATActgacaaattaaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142870 lncRNA downstream 8956 23264303 ~ 23365923 (-) False G123662
TU142871 lncRNA downstream 8956 23264303 ~ 23365923 (-) True G123662
TU142863 lncRNA downstream 119625 23252782 ~ 23255254 (-) True G123656
TU142867 lncRNA downstream 122213 23252405 ~ 23252666 (-) True G123660
TU142850 lncRNA downstream 137990 23236354 ~ 23236889 (-) True G123647
TU143045 lncRNA upstream 174431 23554199 ~ 23554769 (-) True G123821
TU143046 lncRNA upstream 175224 23554992 ~ 23555203 (-) True G123822
TU143089 lncRNA upstream 244934 23624702 ~ 23624901 (-) True G123859
TU143093 lncRNA upstream 246976 23626744 ~ 23627011 (-) True G123863
TU143112 lncRNA upstream 271534 23651302 ~ 23651533 (-) True G123882
XM_021625116.2 mRNA downstream 93028 23279116 ~ 23281851 (-) False LOC110538355
XM_021625096.2 mRNA downstream 96094 23276038 ~ 23278785 (-) True hspb6
XM_021625104.2 mRNA downstream 96551 23276038 ~ 23278328 (-) False hspb6
XM_021625073.2 mRNA downstream 107820 23262463 ~ 23267059 (-) True LOC110538325
XM_021625016.2 mRNA downstream 141111 23224489 ~ 23233768 (-) False LOC110538290
XM_036942732.1 mRNA upstream 13901 23393669 ~ 23405134 (-) False LOC110538238
XM_036942736.1 mRNA upstream 13901 23393669 ~ 23405426 (-) True LOC110538238
XR_002475740.2 mRNA upstream 40531 23420299 ~ 23445208 (-) False LOC110538371
XR_002475741.2 mRNA upstream 40531 23420299 ~ 23445208 (-) True LOC110538371
XM_036942697.1 mRNA upstream 76972 23456740 ~ 23520468 (-) False LOC110538151
TU142857 other downstream 93081 23280179 ~ 23281798 (-) True LOC110538355
TU142589 other downstream 175627 23185640 ~ 23199252 (-) True G123435
TU142449 other downstream 369067 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 996719 22376153 ~ 22378160 (-) True G122972
TU141994 other downstream 1219150 22149517 ~ 22155729 (-) True LOC110537842
TU144219 other upstream 524071 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 779399 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 889458 24269226 ~ 24270136 (-) True G125003
TU144456 other upstream 944812 24324580 ~ 24324836 (-) True G125043
TU144590 other upstream 1151894 24531662 ~ 24534529 (-) True LOC110538887

Expression Profile