Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00027594 |
| length | 642 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 6 |
| gene id | XLOC_013789 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 4968947 ~ 4985996 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030301 | cholesterol transport | biological_process |
| GO:0099044 | vesicle tethering to endoplasmic reticulum | biological_process |
| GO:0006869 | lipid transport | biological_process |
| GO:0005768 | endosome | cellular_component |
| GO:0005770 | late endosome | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0044232 | organelle membrane contact site | cellular_component |
| GO:0031902 | late endosome membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0015485 | cholesterol binding | molecular_function |
| GO:0120020 | cholesterol transfer activity | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0008289 | lipid binding | molecular_function |
| id | description |
|---|---|
| ko04979 | Cholesterol metabolism |
| id | description |
|---|---|
| ZDB-GENE-001120-2 | Predicted to enable cholesterol binding activity and protein homodimerization activity. Predicted to be involved in cholesterol transport and vesicle tethering to endoplasmic reticulum. Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum-endosome membrane contact site and late endosome membrane. Predicted to colocalize with endoplasmic reticulum membrane. Is expressed in yolk syncytial layer. Orthologous to human STARD3 (StAR related lipid transfer domain containing 3). |
| ensembl_id | ENSDART00000134808 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029690 | lncRNA | upstream | 73721 | 4894237 ~ 4895341 (+) | True | XLOC_013787 |
| TCONS_00027573 | lncRNA | upstream | 897285 | 4066448 ~ 4071777 (+) | False | XLOC_013777 |
| TCONS_00029854 | lncRNA | upstream | 1183534 | 3760176 ~ 3785528 (+) | True | XLOC_013769 |
| TCONS_00027600 | lncRNA | downstream | 99807 | 5072972 ~ 5077645 (+) | False | XLOC_013791 |
| TCONS_00029858 | lncRNA | downstream | 180279 | 5153444 ~ 5171518 (+) | True | XLOC_013793 |
| TCONS_00029859 | lncRNA | downstream | 330388 | 5303553 ~ 5311471 (+) | True | XLOC_013794 |
| TCONS_00029860 | lncRNA | downstream | 350913 | 5324078 ~ 5332785 (+) | False | XLOC_013796 |
| TCONS_00029861 | lncRNA | downstream | 351073 | 5324238 ~ 5331165 (+) | False | XLOC_013796 |
| TCONS_00027590 | mRNA | upstream | 6660 | 4912817 ~ 4962402 (+) | False | XLOC_013788 |
| TCONS_00027591 | mRNA | upstream | 10055 | 4912820 ~ 4959007 (+) | False | XLOC_013788 |
| TCONS_00027592 | mRNA | upstream | 10131 | 4916233 ~ 4958931 (+) | True | XLOC_013788 |
| TCONS_00027587 | mRNA | upstream | 63720 | 4856351 ~ 4905342 (+) | False | XLOC_013786 |
| TCONS_00027589 | mRNA | upstream | 75857 | 4892281 ~ 4893205 (+) | True | XLOC_013786 |
| TCONS_00027595 | mRNA | downstream | 17155 | 4990320 ~ 4999232 (+) | False | XLOC_013790 |
| TCONS_00027596 | mRNA | downstream | 17331 | 4990496 ~ 4993189 (+) | False | XLOC_013790 |
| TCONS_00027597 | mRNA | downstream | 17380 | 4990545 ~ 4998941 (+) | True | XLOC_013790 |
| TCONS_00027598 | mRNA | downstream | 99753 | 5072918 ~ 5090732 (+) | False | XLOC_013791 |
| TCONS_00027601 | mRNA | downstream | 103452 | 5076617 ~ 5089813 (+) | True | XLOC_013791 |
| TCONS_00027586 | other | upstream | 157526 | 4800588 ~ 4811536 (+) | True | XLOC_013785 |
| TCONS_00027583 | other | upstream | 192649 | 4776292 ~ 4776413 (+) | True | XLOC_013784 |
| TCONS_00027582 | other | upstream | 198027 | 4770919 ~ 4771035 (+) | True | XLOC_013783 |
| TCONS_00027581 | other | upstream | 231398 | 4737576 ~ 4737664 (+) | True | XLOC_013782 |
| TCONS_00027548 | other | upstream | 1777466 | 3135271 ~ 3191596 (+) | False | XLOC_013763 |
| TCONS_00027599 | other | downstream | 99760 | 5072925 ~ 5081858 (+) | False | XLOC_013791 |
| TCONS_00027621 | other | downstream | 1122453 | 6095618 ~ 6095732 (+) | True | XLOC_013809 |
| TCONS_00027622 | other | downstream | 1654008 | 6627173 ~ 6627290 (+) | True | XLOC_013813 |
| TCONS_00027637 | other | downstream | 2062041 | 7035206 ~ 7035320 (+) | True | XLOC_013824 |
| TCONS_00027648 | other | downstream | 2181336 | 7154501 ~ 7155699 (+) | False | XLOC_013830 |
