RNA id: XM_021625488.2


Basic Information

Item Value
RNA id XM_021625488.2
length 1523
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC110538573
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23984319 ~ 23997362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGTTGAGCGTCAGTGGAAAAGGGTGTTGGCGTCTGTCTGACTCAAGAGTACGTTCGTCTATTGTGTGTCGCTCCATGCCCGACATTTCCTATTTTCCCCCCTACACACATCTCCATTTGGGTTTAACGCGTGTCGGAGCATGGCTCCTGCAACTATGGTGATGCGTAACCATGCCAACACAGTACAGCATGGCTCAGTTATGTTCTGCTCACTAGTGTGACATGGACCTAAAATACAGATGAGCAACGTTCAAAAGTGAGGACCCCGGAGAGACTGCAGTGTGATCACAGAGTGTGACGCTTATTTATTCTGTGAGACATGACAAATCACAAGAGATGATAGGTGAGAGTTTGAAGATGGCAAATATCTCTGCTTTGATTTTATTGACATCAGTTACGTCCCTTGTGTTCGCAGAGGAGCAGAAAGAAATGGAGGAGGAAGATCCATTTACCTTTGATTATCACAGGCTACGTGTTGGGGGGTTGATCCTGGCAGCAGTTCTGTGTCTGATTGGCATCACCATCCTCTTCAGCGGACACTGCAGATGCAAGTTCAACCAGGACAAAAGGAGGAGGTCAGGAAGCAACGCCGCCCAGCCCCTCAACGACCAAGCTCGGGCCAGTGAGTGCTAGGAACCAAACTCCCACCTGGCAGCAGGTCAAATCGACTTCCTGGTTCTGCATCAATCAAGAGATAGAAATTGATGGGTGGAGTTGGCTTGTTTTTTGTCCAGTGGAGGTTGTTTTTTAGAGAGTGGTGCTGTCTTCCCAAGAGGGAGGTGGTACTGTGCCATTGGTGATCAGAGGTGTGCTGCTTTTACCTGTGTTGCTGTTCTCCCTTCCGCCCATTACTCCTGTTTCTGCTCCGCCCAATATTCACACTGTAACTCACCACCAgcaagcacacacagacagacaaagcagGACACGGTTTTTCCCCATGTTCTTTGTATTTAAACAGATAACCAAAAGATGCTGTGTCGACTCACTCATTATTTCATTGCAATGTTTTTCACCTCTAGTAGCTCCACCTGTATGTGGAAAATATGCAGTAGatttgactgtttgtgtgtgttttgaattGACATACTGTCTCCTAATAATCTTACATGCATATACATTACTGTAAAATAGGTACCGGTAGCCATAAACTATTATAATGTCAATAACTATTCACACACTTTTATCTTGATTATTCCTATATTAACTTTTTAGTTGAATGTAGAAAAGTGCACTGGTCTATGCAGAAGAATCTGTTGTATGATAAATGCAATGTTTTTTTAATAGTACAGAATATAAAAATTATTTCAATAAGCTGATGATATAGTTTTGATTGAGAGTGTTTGCCACCAAAACAACATTAATGTTATTTTAGTTTGTTAGATACCACACAAACAATTACTGTCCCTGAAGAgggttttctccccaattggctTTTAGTGAGTCACGGTCTACAAGATGTTTCTTGGCAAATGAGTAGATGGTGTCTATGTTTGTAATTCAAATTAAAAGAGTTACCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143297 lncRNA upstream 296 23980826 ~ 23984060 (+) True G124049
TU143272 lncRNA upstream 81218 23902903 ~ 23903138 (+) True G124024
TU143271 lncRNA upstream 82803 23901270 ~ 23901553 (+) True G124023
TU143265 lncRNA upstream 92269 23891853 ~ 23892087 (+) True G124017
TU143260 lncRNA upstream 97066 23882624 ~ 23887290 (+) True LOC110538531
TU143327 lncRNA downstream 28442 24025804 ~ 24026089 (+) True G124079
TU143328 lncRNA downstream 30075 24027437 ~ 24027655 (+) True G124080
TU143337 lncRNA downstream 58461 24055823 ~ 24056120 (+) True G124087
TU143364 lncRNA downstream 118085 24115447 ~ 24115658 (+) True G124113
TU143366 lncRNA downstream 119870 24117232 ~ 24117456 (+) True G124115
XM_036943026.1 mRNA upstream 9398 23970410 ~ 23974958 (+) True LOC110538617
XM_021625461.2 mRNA upstream 15042 23946773 ~ 23969314 (+) True LOC110538566
XM_021625443.2 mRNA upstream 47322 23924568 ~ 23937034 (+) False LOC110538544
XM_036943020.1 mRNA upstream 47322 23924568 ~ 23937034 (+) True LOC110538544
XR_005035931.1 mRNA upstream 97643 23884655 ~ 23886713 (+) False LOC110538531
XM_021625568.2 mRNA downstream 4203 24001565 ~ 24015944 (+) True LOC110538629
XM_036943049.1 mRNA downstream 44319 24041681 ~ 24054664 (+) False LOC100136301
XM_036943054.1 mRNA downstream 44355 24041717 ~ 24054664 (+) True LOC100136301
NM_001124246.1 mRNA downstream 72007 24069369 ~ 24076225 (+) True LOC100135863
XM_021625604.2 mRNA downstream 80313 24077675 ~ 24081015 (+) False tmem147
TU143245 other upstream 102720 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other upstream 102720 23861917 ~ 23881636 (+) True LOC110538497
TU143220 other upstream 158854 23824693 ~ 23825502 (+) True G123980
TU141439 other upstream 1173093 22810767 ~ 22811263 (+) True G122459
TU141081 other upstream 1634420 22348583 ~ 22349936 (+) True apoc4
TU143372 other downstream 149499 24146861 ~ 24148593 (+) True G124121
TU143399 other downstream 543642 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other downstream 543642 24541004 ~ 24543611 (+) True LOC110538915
TU143765 other downstream 875689 24873051 ~ 24873834 (+) True G124451
TU144043 other downstream 1380122 25377484 ~ 25382312 (+) True LOC110534557

Expression Profile