RNA id: XM_036943049.1


Basic Information

Item Value
RNA id XM_036943049.1
length 4071
RNA type mRNA
GC content 0.50
exon number 23
gene id LOC100136301
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24041681 ~ 24054664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACAGCAGTGATGCCAATGTGGAGTGTGTCACCATCACACCTTTTAGCAGTCTGAGGTACAAATACTGTTGGTGATTTTACTGTGAGGAACGTTCCTAGTGAGGATATAAAGACGCTTCCAAGATTTCGGGGGGAGAGAGGACTGAGCGTTGGACTTCAATTGATTTGGGCAGGCCCTCCACCATGAGTAAAGGGGACTCTTACGACATGTTTGAGATGAATGGAGAGGTGGACGTCAAgatgaagaaaaagaagaagataaAGAAAAAGGATAGGCTAGAGGGCATGAAGAAGGAGATGGACATTGATGACCACGAGATCACAATAGAAGAGCTAGAGATGAGGTATACCACCAGTGTTACCAAGGGCCTGACGTCCAGCAAAGCAGCGGAGGTTCTGGAGCGGGACGGCCCCAACGAACTGCTGCCCCCCAAAGGGACCCCAGAGTACGTCAAATTTGCTCGTCAGCTGGCCGGAGGGCTGCAGTGTCTGATGTGGGTGGCAGCCGTCATCTGCTTCATTGCTTTCGGCATCGAGTTCTCCAGGGGAACCCTCGGCTGCTTTGACGATCTGTACCTCGCCATCACTCTGATCACTGTTGTTGTGGTGACTGGCTGTTTCGGTTACTACCAAGAGTTTAAGAGCACCAACATCATCGCCAGCTTCAAAAATCTAGTGCCACAGCAAGCCCTGGTGATCCGTGACGGGCAGAAGAACCAGATCAATGCCATGGACCTGGTGGTGGGCGACCTGGTGGAGATCAAGGGTGGTGACCGCGTGCCTGCTGACATCCGCATCATCTTTGCCCAGGGCTGTAAGgTGGATAACTCATCCCTGACAGGAGAGTCAGAGCCCCAGAGCAAAACCCCGGAGTGTACCCACGAGAACCCCCTAGAGACTAAGAACATTGCCTTCTTCTCCACCACCTGCCTGGAAGGAGTGGCCACAGGAACGGTCATCAACACGGGTGACCGCACCATCATTGGCCGCATTGCCAGCTTGGCGTCAGGCGTAGGCAATGAGAAGACGCCAATTGCCATAGAGATTGAGCACTTTGTTGACATCATTGCTGGGCTGGCCATCTTCTTTGGCTTCACCTTCTTTGTGGTGGCCATGTTTATCGGCTATGCCTTCCTGGAGGCTATGATCTTCTTCATGGCCATCGTGGTGGCCTATGTACCTGAGGGGCTGCTGGCTACTGTCACTgtgTGTCTGTCGCTGACGGCCAAGCGTCTGGCCAGGAAGAACTGTGTGGTGAAGAACCTGGAGGCTGTGGAGACCCTGGGCTCCACCTCGGTCATCTGCTCCGACAAGACGGGCACTCTGACCCAGAACAGGATGACCGTGGCCCACCTGTGGTTCGACAATGTGATCCATGCCGCAGACACCACAGAGGACCAATCAGGTCAGAGCTTTGACCAATCATCCGAGACATGGCGATCGTTGGCAAGAGTGGCAGGACTCTGTAACCGGGCCATCTTCAAACCCAACCAGGAGTCTCTGCCTATTCCTAGGAGAATAGTGGTGGGCGACGCCTCAGAGACGGCTCTGCTGAAGTTCACTGAGCTGGCCATAGGGAACATGATGGAATACAGGGAACGCTTCAAAAAGGTTGTTGAAGTACCATTCAACTCCACCAACAAGTTCCAGCTGTCAGTGCATGAGTTGGAAGACCCCATGGACCTGCGCTACCTGCTGGTGATGAAGGGGGCGCCAGAGAGGATCTTGGAGCGCTGCTCCACCATCCTGATCAGGGGCCAGGAGATGCCCCTGGATGAACAGTGGAGAGAGGCCTTCCAGACTGCATACATGGACTTGGGGAGCCTGGGGGAGAGAGTGCTGGGTTTCTGTCACATCTATCTAAATGAGAATGAGTTCCCTCGTGGTTACAAGTTTGACTCCGATGAGATGAACTTCACCACGTCTGGTTTGTGTTTCGCTGGACTCATCTCCATGATCGACCCGCCCCGCGCCACTGTGCCTGACGCTGTCATGAAATGTCGCACGGCTGGAATAAGGGTAGTCATGGTGACAGGCGACCACCCGATCACGGCCAGAGCCATCGCTGCGAACGTTGGCATCATCACAGAGGGCAGTGAGACAGTAGAGGACATCGCTACCAGGAAACGCATCCCAGTGGAGCAGGTCAACAGGAGGGATGCCCGTGCCTGTGTGATCAGTGGTGGTCAGCTGAAGGACATGAGCAGTGAAGAGCTGGACGAAGCGTTGAGGAGTCACCCTGAAATGGTGTTCGCCCGCACCTCCCCCCAGCAGAAACTCATCATCGTGGAGAGCTGTCAGCGCCtgGGCTCCATTGTGGCTGTGACAGGCGATGGGGTGAACGACTCCCCTGCGTTGAAAAAGGCAGACATCGGTATTGCCATGGGCATAGCTGGCTCCGATGCAGCTAAGAATGCAGCTGACATGATTCTGCTGGATGACAACTTTGCCTCCATCGTCACAGGGGTGGAGCAGGGCCGTCTGATCTTTGACAACCTGAAGAAGTCTATTGCGTACACACTGACCAAGAACATTCCGGAGCTCACACCCTACCTCATCTACATCACTGTCAGTGTTCCTCTGCCATTGGGCTGCATCACCATCCTCATGATTGAGCTGGCCACTGACATTTTTCCCTCTGTGTCTCTGGCCTATGAGAAGGCTGAGAGTGATATTATGCATCTGAAACCCAGGAACCCGCGTAAGGATAGGTTGGTGAACGAATCTCTGGCTGCCTACTCCTACTTCCAGATTGGCGCAATCCAGTCTTTCGCTGGTTTCACAGACTACTTTACAGCGATGGCCCAGGAGGGCTGGTATCCCCTGCTGTGTGTGGGGCTCAGGTCCCACTGGGAGGACGTCCATCTGCAGGACCTGCAGGACAGCTATGGCCaggagtggACATACGCCCAGCGTCTGTATCAGCAGTACACCTGCTACACTGTCTTCTTCATCAGTATTGAGATCTGCCAGATTGCTGATGTGTTGATCAGGAAAACCCGCCGTCTGTCCATCTTCCAGCAGGGCTTCTTTAGGAACAAGGTGCTGGTGAGTGCCATCGTCTTCCAGCTGTTACTGGGTAACCTGCTGTGCTACTGCCCAGGGATGCCAAACATTTTCAACTTCATGCCCattagGGGCCAATGGTGGTTCGTTCCAATCCCGTACGGAATTCTAATCTTTGTCTATGACGAGATCAGGAAGCTGGGGGTCAGAAGACATCCAGGAAGTTGGTGGGACCAGGAGCTGTATTATTGAGAGAAGAGGGCATATATCTAGACCAGAGACATAGGTATAAAGATGCAGGTTAGCATTTTccatcatgaatcttgttctggaggcagctctgctctgcagtggtcactagctggcacagccacaaagtcataaaatcagattttaattataaccctaacccaaactttAACCACACTAGCAAATggctaaccctaaacttaaattAAGAccgaaaaacacatttttgttttcattattttttacaatatacccaatttgactttgcagctggcctaagAGGAAATTTCTCAGTTATGCCTCTAGGACAAGACTCATGActataaacgtcaacctgctatACAGAGAAGTCTGGATAGCAAACTGTCCTCCATCTTGGTCCCAAACATtccattacaatacaatacaatacaatttaaATATCAAACAAGGTTTGCCAAACTCTGTACAAGTATAGCTCTGAATATCCTTAACCATTTCTGATATGGAACCAAATCTTATACATTGAAACAATAACCATGAATTATTTTGTGATATGTTTGTAAAGACACACCTCCATGTTCTAATACAAAAAAATAGAATGCTTGATGTGAGTTTGTCATATCAATTTGAATTTGGAATCATTTCCTTTTGTAAATGTAGTATGTGGATGTCTGTGGGTGATTGCCTTTTGTTTCTGAATTCCATTGCCTTTTTATGTATAACATCACACATATTTGCCGTCAAGGGTTCTTTCTTGGTGATAATGTTGgtagtacagtagcctatatgcattgtatttatgtatttgtaTTAATAAAGTGTGTCAAATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143328 lncRNA upstream 14026 24027437 ~ 24027655 (+) True G124080
TU143327 lncRNA upstream 15592 24025804 ~ 24026089 (+) True G124079
TU143317 lncRNA upstream 50847 23988981 ~ 23990834 (+) True G124069
TU143297 lncRNA upstream 57621 23980826 ~ 23984060 (+) True G124049
TU143272 lncRNA upstream 138543 23902903 ~ 23903138 (+) True G124024
TU143337 lncRNA downstream 1159 24055823 ~ 24056120 (+) True G124087
TU143364 lncRNA downstream 60783 24115447 ~ 24115658 (+) True G124113
TU143366 lncRNA downstream 62568 24117232 ~ 24117456 (+) True G124115
TU143370 lncRNA downstream 74934 24129598 ~ 24129956 (+) True G124119
TU143373 lncRNA downstream 91402 24146066 ~ 24146722 (+) True G124122
XM_021625568.2 mRNA upstream 25737 24001565 ~ 24015944 (+) True LOC110538629
XM_021625488.2 mRNA upstream 44319 23984356 ~ 23997362 (+) False LOC110538573
NM_001124246.1 mRNA downstream 14705 24069369 ~ 24076225 (+) True LOC100135863
XM_021625604.2 mRNA downstream 23011 24077675 ~ 24081015 (+) False tmem147
XM_021625614.2 mRNA downstream 23078 24077742 ~ 24081015 (+) False tmem147
XM_036943064.1 mRNA downstream 23422 24078086 ~ 24081015 (+) True tmem147
XM_021625630.2 mRNA downstream 51980 24106644 ~ 24124814 (+) False LOC110538661
TU143245 other upstream 160045 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other upstream 160045 23861917 ~ 23881636 (+) True LOC110538497
TU143220 other upstream 216179 23824693 ~ 23825502 (+) True G123980
TU141439 other upstream 1230418 22810767 ~ 22811263 (+) True G122459
TU141081 other upstream 1691745 22348583 ~ 22349936 (+) True apoc4
TU143372 other downstream 92197 24146861 ~ 24148593 (+) True G124121
TU143399 other downstream 486340 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other downstream 486340 24541004 ~ 24543611 (+) True LOC110538915
TU143765 other downstream 818387 24873051 ~ 24873834 (+) True G124451
TU144043 other downstream 1322820 25377484 ~ 25382312 (+) True LOC110534557

Expression Profile