RNA id: XM_021625689.2


Basic Information

Item Value
RNA id XM_021625689.2
length 1950
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110538727
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24190890 ~ 24200234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTCGTGATGGAACAAAACCACGACTCCTACGTCATAATAATGCGACTGGCCATTTTGGACAACGTTGGCCTCGGTTTGTAGTAAGTATGGCGATGAAATCAGGAGAGGAGCGGTTGAAGGAGATGGAGGCTGAAATGGCTCTGTTTGAGCAGGAGGTCCTGGGGGGTCAAGTGGCAATGACTGCAGGAGACCCTGTAGTGATGGAGTTGCTCCCAATGGGTGTTCCTATGACTGTTCCTATGATCCGACCCATCATCGGCACCAACACCTACCGACAGgtTCAGCAAACTTTGGATGCAAGGGCTGCCACTTTCGTGGGACCTCCACCCCCTGCATTTGTAGGCCCAGCTATAACCCCAGGTGTCAGACCACCGGCAATGATGAGACCAGCGTTTATGCCGCACATCCTGCAGAGACCAGGTCCGAGGATGCCTGTGATGAGTGGTCCCCCTCCACAGGGTATGATGGCTCCCCCACTGCCACGCCCCCCTCCTCCCCCGCCCATGATGATGGCACCCCCCATGCAAGGACCCCCTCAGCATCCTCAGCATCCCATGGACCCAATGGGGCATATGAGCTCAGTAGGACCTCCGGTGGGATCGACCCATGGTACACCCATGGGACACTCCATGGTGTCTGCACCCTCCAGGTCTGTGACCCAGGCCCCTCCCAAGCTCACCCCCTCGATCATCTCTGCAGCCCCCACTGTCTACACGGCTCCCTCCGGACCCAAGATACCAGACATCCATGCCCAGAGAAAGGCTCGCATGGAGGAGCTGGCAGCGTCTGTAGCAGAGCAGCAGGCAGCGGTGATGGCCGCCGGACTGCTGGAGGCTAAGAAGGAGGCCAGCCTAGCCGCCTCAGATGACAACGTTATCGGACCCAGCATGCCAGAGCCCGAGCCCATCCACACTGAGCCAGCGGATAGCACaacagaggagaagaagaagggtaAGCAAGAGAAGGCGAAGAAGTGTATCCGTACAGCCGCAGGCACCAGCTGGGAGGACCAGAGTCTACTGGAGTGGGACTCAGATGATTTCAGAATCTTCTGTGGAGACCTTGGCAATGAGGTGAACGACGACATCCTGGCAAGGGCATTCAGCCGCTACCCCTCCTACCTGAAAGCCAAGGTGGTGCGGGACAAACGCACAGGCAAGACCAAGGGCTACGGCTTTGTCAGCTTCAAGGACCCCAATGACTACGTCCGAGCCATGAGGGAGATGAACGGGAAGTATGTCGGCAGCAGACCCATCAAACTGAGAAAGAGCATGTGGAAGGACAGGAACATGGAAGTTGTACGcaagaaacagaaggagaaaaaGAAACTGGGACTGAGATAGATGGTATTTCccttgtgtatgtatgtgcgagTGTTGTTTTTTGACTGGGAGTGTGTGAGAATCACACTGATGGCAGAACACTGTTGCCATTGCCCAGTTGGAAGGCCACTCATCCAGCTATCTGACATGTTTTCCATTACCACAGAGTAGGGATGTCATTTTACTCATGGAACATGGTTAAACTAGGCTACAAAACACTGTACATGGTCCTGGTTGTAATGGTTAGACATGAACCATGCCCTTCTGAAGTGTAGAATGTACTGATCTCCtgtttctgttgttttttttttacattttagtttgTAAAAAAATTCAACATCACTCAGATTTTCTTAATTGGTATGGCTCCCATGCATCTCATGATTTTTGTCTGAAATGTGAGTTTGGTGATCTTGTTTATGTATATGCTATTGTGGAAACTACTTCCAATGGCAATTATGTATTTCCGGAGAGCCTCTGTTATTCACacagggatttaaaaaaaaaaaaaaaaaaaaaaaaactaaatatttGTACATTAAAGTGGATTATTTTAAAGCAGCGATTTGAAAATAAtgcaaagttttttttaaataaaaccaAATGTCTTAACCGGCTTGACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143369 lncRNA upstream 13196 24177290 ~ 24177694 (+) True G124118
TU143368 lncRNA upstream 13739 24176846 ~ 24177151 (+) True G124117
TU143393 lncRNA upstream 18416 24172170 ~ 24172474 (+) True G124139
TU143386 lncRNA upstream 26989 24163695 ~ 24163901 (+) True G124132
TU143384 lncRNA upstream 28077 24162565 ~ 24162813 (+) True G124130
TU143426 lncRNA downstream 45329 24245563 ~ 24250400 (+) True G124146
TU143455 lncRNA downstream 50705 24250939 ~ 24253089 (+) True G124170
TU143460 lncRNA downstream 55511 24255745 ~ 24256051 (+) True G124175
TU143461 lncRNA downstream 55962 24256196 ~ 24256496 (+) True G124176
TU143517 lncRNA downstream 124064 24324298 ~ 24324536 (+) True G124225
XM_021625630.2 mRNA upstream 66076 24106644 ~ 24124814 (+) False LOC110538661
XM_036943136.1 mRNA upstream 66076 24106645 ~ 24124814 (+) True LOC110538661
XM_021625604.2 mRNA upstream 109875 24077675 ~ 24081015 (+) False tmem147
XM_021625614.2 mRNA upstream 109875 24077742 ~ 24081015 (+) False tmem147
XM_036943064.1 mRNA upstream 109875 24078086 ~ 24081015 (+) True tmem147
XM_036943107.1 mRNA downstream 865 24201099 ~ 24238678 (+) False LOC110538747
XM_036943116.1 mRNA downstream 865 24201099 ~ 24238678 (+) False LOC110538747
XM_036943119.1 mRNA downstream 14853 24215087 ~ 24238678 (+) False LOC110538747
XM_036943124.1 mRNA downstream 14853 24215087 ~ 24238678 (+) False LOC110538747
XM_036943133.1 mRNA downstream 15203 24215437 ~ 24238678 (+) False LOC110538747
TU143372 other upstream 42297 24146861 ~ 24148593 (+) True G124121
TU143245 other upstream 309254 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other upstream 309254 23861917 ~ 23881636 (+) True LOC110538497
TU143220 other upstream 365388 23824693 ~ 23825502 (+) True G123980
TU141439 other upstream 1379627 22810767 ~ 22811263 (+) True G122459
TU143399 other downstream 340770 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other downstream 340770 24541004 ~ 24543611 (+) True LOC110538915
TU143765 other downstream 672817 24873051 ~ 24873834 (+) True G124451
TU144043 other downstream 1177250 25377484 ~ 25382312 (+) True LOC110534557
TU145423 other downstream 1482646 25682880 ~ 25757853 (+) True G125934

Expression Profile