RNA id: XM_036943116.1


Basic Information

Item Value
RNA id XM_036943116.1
length 7195
RNA type mRNA
GC content 0.57
exon number 24
gene id LOC110538747
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24201099 ~ 24238678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTCCCATCATTGCCTGAATTGAGGCAAAGAATGCAGCATACTGGCAATGTAGAAAGGCCGACTTTGCATGAACCGAGAAATTATCTTCAGATTTCTAACTAGCAAATTATGTCGTCGATAATATGAGGACATTTGTCTACATTTTCATAAGGATCTCGCTGAAAATAAGTGTTTTTGTCAAAGCAAATAACTCGATTTCGCCACCCCCTCGTGGTCCCCGTGCCTCCTCCCAGTCCTGTCTTTGAAGGGCTAGTGACGAGTGGTTTGGTCCTTTTTCGTGTTAGATTCACATCAACTAGGAATGATGCTTCGACATTTTCTAAATGTGAGGTAAACTGTTGGCATAGTTTGCTAACGTTACGTATCAATGTAAGAAAAAGAGGGCCACTTTAATGAATGCATCAATCAAACATTAATTTAAACCAGTGAGATTGGAATTTGAAGACGGAGACCCTCCGACCCTTTCCCCCGAACCTGGATATCGGAATGGTGTGTCGTGACCCCAGTGGGTTGGGAAATGCACCATGTTTATACGCGCTATGAACCGGACAGTCATGTCTGGCTTGGAGCACCGATAATCTGGACACTTCCGGGGAGCCCACTACCCGCTCCGTGGGTACCACTGCCAACTTGAAGGGGAAGATGAGCAAGAGGCTGTCTGTTGTGAAAGGTCACTTCCCTAAGCTCGTTGACTGTGCCCACTTCCACTATGACAATGTGGAGTTTGGCTCCATCGAGTTGCAGTTTGCGAATGAGCAGAGCGTTGCTAGCTGGAACTCGGGCTCTGCCAAAAACCTGGTTTTCCTGGTGCAGGTGTCCTGCCAGGCTAAGATGTGGATGGTTCGGCGCTCCTATGAGGAGTTCCGTACTCTGGACGCTCACCTCCACCAGTGTATCTACGACCGGCGTTACTCCCAGCTGCTGCCCCTGCCACCCCTCAGCGAGATCGGGGACAGGGTAGAGATCTTCACCCCGCTGCTGTCGGAGTACCTGAGCCGCCTCTCCATGATCGTGGACAACAAGCTCAACTGTGGGCCTGTGCTCACCTGGATGGAGATTGACAACCGTGGGAATCGGTTCCTCCTGAAAGAGGAAGCTTCGCTCAACGTTCCCGCCATCGCCGCTGCTCATGTCATCAAGCGCTACACGGCGCAGGCCAGCGACGAGATCTCCATTGAGgtgggaGATATCCTGTCTGTAATTGATATGCCACCCAAAGAGGACTCCAACTGGTGGAGGGGGAAGCATGGCTTCCAGGTGGGCTTCTTCCCCAGTGAGTGTGTGGAGCTCATCAACGAGAAGCCTCAGTCCACCGCTAAAATAgATGGAGATCCAGCCAACTCCAGCGCACCAGGACCTCCCTCTCCTACATCTGtttctaagaAGCACGGCAAGCTGATAGGATTCCTGCGCACCTTTATGAAGTCCAGGCCCACCAAGCAGAAGCTCAAACAGAGAGGCATTCTTAAGGAGAGGGTGTTCGGCTGCGACTTGGGAGAGCACCTCCTCAACTCAGGACTGGACGTTCCACAGGTTCTAAAGAGCTGCTCAGAGTTCATAGAGAAGCATGGTGTGGTGGACGGCATCTACAGGCACTCTGGAGTCTCCTCCAACATTCAGAAACTCCGACATGAGTTTGACAGTGAGAATGTTCCAGACCTGACCAAGGATATGTACATGCAGGACATCCACTGTGTGGGGTCCCTGTGTAAGCTCTACTTCAGAGAGCTGCCCAACCCCCTGCTCACCTACCAGCTCTACGACAAGTTTGCTGACTGTATGGGAGAGATGACGGACGGCGAGCGCATGGTGAAAGTACATGATGTCATCCAGCAGCTCCCACCACCGCACTACAGgaccCTGGAGTACCTCGTTAGACACCTGGCTGGTCTGGCCACCTGCAGCGGAGAGACCAACATGCACATCAAGAACCTGGCCATTGTCTGGGCCCCCAACCTGCTcagATCTATGGAGATCGAGGCGGTGGGTCTGAGTGGTGCTGACCCGTTTAAGGAGGTGCGGATCCAGTCTGTGGTGGTGGAGTTTCTCCTCGGTCACGTGGACGTGCTCTTCAGTGACTCCTTCACCTCTGTAGGACGCTTCACAGGCACAGGGCGGCACTCTCTGACCAGGCCCAAGTCCTTTGTGTCCGCCAGGCTGCTCTCCCTAGAAGAGGCCCAGGCCAGGACACAGgctcctctgctcctccagggGGCGCCAGTCCAGTTCCAGGGCCAGTTCCACACCGTGCTGGACCACCCTGTCGACAGgaggaagagagggctgAAGGTACGGAAGGCAGCTGGAGGGAGCTGGAAGACATTCTTTGCGATCGGGAAGCCTCCGGGGGCGGGGAGACGTAAACCAATGAGGATTAGCTCCCTGTTCCAGCCCGCCACCTCACACGCAGGTTGTCGTGTGGACAGTGTGACCCTGCGTTCAGCTAAGAGTGAGGAATCCTTATCGTCCCAGCACAGTGGAGCAGGACAGTCTATCCGTCTGCGGCGGCCCCGCTCCAGCAGTGATGGTCTGTCTTTGGCTGCCTCCATGGACCCCCAGCACCTGCCTCAGCGCCCCCCGTCCCGCCTGCCTTCCAGCCGCTCGTATGACAGCCTGCTGCCTGAGGACCGCCGGCCCAGGGATGATGGAGACGATGAGGAGGATGACGACGAGGAAGGCATCTACATGCTGCCTGACTTCTCCAACCAGGACCCGGCTGCTTCCTGGATGGCCGAGGACGTCATTGACTTCAGCCCCACCTTCCTGGAGGACGGACCAATCGGCTTGGGCAGCAGCGCAGTCACCGCGGGCGGCAGGGAGTCCCCGCCAACTGCCACGCCCCCTCCCTACCGCTGCCTCAACCACCAAGGACACTCTCACTCCAGCAGCCAGCGCTCAATCACAGAGGACCCCGACTCGGTGCTCAACCAATCGGATGCGGCCGTCAGGAGGAGTCTGATCATCGCCGCCACAGCCCCGCCCCTTCAGGTGTTCTGTCAACACAGACCGGTCAATACCAGCCCATCTGCCGGCCAATCAGGGGAAGGCTCCAACCGGAGTACCTCAAACAGCCAGGGCCAGCCCACTACACCTGTGACCTCTGCCCCCTCTGCTCAGCCCCCAACAGAGAGAAGATCTTTCACCCGGAAGATGGTGAACGCCTTCTCACAAAAAGCCCCCAAGTCCCCTACACTGGACATCTCTGACCCTGTATCCATCAGCGTCCCTGCTAAGGTGTTGGACATGATTGGCGGCCGAGCTGGTGAATTACAGCCTGGCATCCCAAGCAGTGGACCCTCCCAGTCACAGCCTCCTCAGATGATCTCCATGCTGCTGAGGTCATGTGACTTCCAGCTGACGGAGAGCTGCCAGCAGGAGATCCGCAGCAAACTGGGCCCCGAGGCCAAGATCAGAGGACAGGGTATAACAGAACCCACCGGTGCCCCCCTGCTCTCccagcctccccctccccctcctaaaAACCCAGCACGCCTCATGGCTCTGGCCCTGGCTGAGAGTGCCAACAAGGCCCTGAGACAGGGCGCCTCGCCCCCCTACCGCCCCCCTCAGTCTCGGTCCCAGGACGCAGCCGACACCCACTACCAGAGGTCCCTGTCTGCCGACGCAGGAGAGCTGCTGTCCTCTGACCCCAATCCGCTCTACTCCACAGTGCGCCCCCTGTCTGTGTGGATGACCGAGGGAGAGGAAACCGCGACAGAGACTGCAGCAGATACAGGACACGGCCAGGGAGAGAGGACTCCAGGACAGGTGTGTGGGAGTGTGCACATGTCTgatACGGAGACCCTGTCCTCTGAGACGTCTGACTCTGTGGCGTCCAACTCGGAGTTGTCTGGTGGGAGCGCCTCTGGAGACGACCAGACCCCCAGCCCCATCTACAAGAACCAGAAGCAGCTGCCCCAGTCACAGCCCGCCAAACCAGGCCAGTCTGGGGAGAGACCTAGCCCCACTGAGTCCCAGTCTCAGAGGAAGCCCCCAGCCTACTCACGACAGTTATCTGCCCCTCACCTCCAACAGAAATCAACCTCCACCCAGTCCAAGCCGTCCTCAGCCCACCCCCAGCTCCTGCACTCCAAGTCAGAGTCCCCTCTGACTCAGGTCCGTGCCTTCCAGCCCACCCGCCCCAAAGTACCCCCTAAGCCCCTAGATCTGAAGCGTCCCCACAGAGCACCACTGGCCCAGAATGAGATGCGTCGCTCCCTGGACTCAGGGCGCATCAGGCGGATCTTTGGTCAGCAGGGGAACCCTCCTCTGGCCAGGGCCTTCTCAGAGCGTCTGAGTGGAGCTCCAGACCACCTCGCCCGCTACCACGCAGCCAGGGCAGCCAGCCAACCATCCCCGGGTCAGCAGCCCCCTCAGCAGACCCAGATCCGGCCCGtgcccctctcctccacctcagaGGACCAGGGAAAGATGGAGAACTTCTACTACGAGATCGCCGGGCCTGAGAACCCGCAGGGCCCCCCCAGCTATGCCCGCCACAGCTACCAGAACATGAGGCTGGACCTGGAGGGTAACTTCCGCCCGGCACCCCACCCAGAGGTCAACAAAAGGCCCATCTCCCGGGGGCATCACCAACACCAACCCCAGCCTCTCCACCACAACCAGGGTGGacccagaggggagagggggcccCAGCTCTGGTCCAAAGAAGCCACGCGGGCTTGGGCAGCTGCCCACTCCCAGTCCCACTCAGTCTTCCACGGACACTCCCACTCCCAGGACGGCTccacccaccaccatcacccctctcACCCCCGGCCTCAGCGCCAGACCTCCTCCTCAGTCCGGCTGGCCCGTAGTGAGAtgcaccccctcccctcctcctccatggttCCCCTCTACCAGCACCAACACAACCTCCACCGCTCCAACAGGTCAGCCTCCACAGacctcacctcctcccagctacacCCCTATTTTGAAAACGGGAAGGTGTGCTATCGTAAGCCAGAGGAGGCTCCTCTGAGTCTGAGCCAGCCTCCCCAGGGCATCTCTCTCCAGGGTCAGCCATCCCAGCCCTCCCCTCCCCAGGCCCACAGACCAACCTCCAAGGACCTGTCTGAGCCCATCTACGTCAACTTCCCTTTCCCCAGCCCATCTACTGGGGCCCAAAACACGAAGAACTGGACCAGTACAGACCTGGATGGAGACTCTACACATGATTCTGAACCTCTTGCCACGCCAAACGACCCCCCTCCCCCAGAGGACCAGAGACAGTCCTCCCCTCGCCTGGCCCCTGACCAGGGAGGCTCCACCAGCGTTAGCCTTACCCCCTCCACTCCAGACAGCCCATCCGCCCACAACGACTCGGCTGCAACCACCCCAGGGAGCATCCAGGAGAGCATCTTCCTCCCAGCTCCCATAGCGTCTACATCGACAGGGATCCACTACCGCAGCCGCTCAGACCCCCAGAGCTCCATCTGCAGTACGGAGCACATCCCGGGCCTGTCGGGGAAGGAGATCGCCTCCCTGCTGATAGAGAAGctggctgaggaggagagggctGAGGGTCCCTCCACAGtcacctcctcctctgcctccaccAACTCCTCCCCTGCCATGGAGCACCCTGCCAACCCCTACCCCAGCCAGCAGCACAATCAGCCCCCGCCTGCCTATAATGTCTACACCCCGGGCCCCTCACTGATCAGGGCTCCTCAGAGGGCCGGGGCAGGGGGCTTCCAACGCCAAGACCCGCTCTGGAGGTCCTCGCCGGGGGGCCAGTACAGGCAGGCCTTTGACGTCATGCCCTCAGGCGATCAGGTGCTCAAATACTACCGGACCCAAGACTTTACCCCTGGGCCCCTGGGAGAGCACCATAGCTCTGGCACTAACCCCTACCCCCCTCGGCTGCACTATCAAGAGCCCCCCTACCCCATCCAGAGCCCCCAGGACCCCTGCTCCTCCGGCTACCCTAGCCAGCCCCTCTTGGAGCCCTCAGACTCCCCATCTGCAGCTTTCTCCAACCTGATGCTGGGAGCCCCCAGGCCCTTCCCCGGCCAGCCAGGAGGCCCCCAGTACAGCCAATACCCATTCCATCCTGGCCCGATGCTGGGCCAATACCCCAACCCTCCCCCCCGCAGAGATGTGGTCCACGAGCCGGTGCTGCTGCCGCAGGGTCTGAGGAACCAGAGAGGGCTGGCACGGCAGGGCAGCTTACCTGGACCATCACCCAACTGGACCATCCATACTGAGGGTCAGACACGCAGCTACTGCTGAGGAGGAGCGCAAAGTAGACTTTTACACGCTGTACCCTATCAGACTgaatgtgaaagagagagaaagagttaggaAGAGACCATGTAAAACTCTCATGGTCCACAGAGAAAGGGAACAGGACGATAGAAAGCCTTCCTGGAAACGTGAGACAACCGGTCATGTTTAGAAATGAGGGCAAGGCATTCTGGGGTAGCTAGACATAAAGTCCAGTTTCCTGTTTGAACATTCCCTGGGGCCTATCACCATTTCACACCTGCAACCACTGGACCCATGAGGAAGAAGAGATCAACGAGATGAACCGAAAAGTGGCTTAGATTTGAAAACATTCCAGAGCAGACTGTTGTTGTGAGTGTTTATgaaagaaaaagaaaggaaaATGGCTGCCAGGGTCTTTTCTGGATCAAAATGTGCTTAGGTGGTGGGCGTGGCCAATGGTGGCCGAGCAACCATTTTAGAGGCCCTTCTGTTGGCCGCAGTGACAGAATGTAGCAGTTTTAAAGCACATCACCAATTCAAAAAAACTATTGTGGCCCCATGCCATGACAAAAACATCTGGGGGCCCCATGCCATGACAAAAACTCCTGAATGCATCATTTTATGCATTGTAGATTCTCCCTGTATCTAGCTTTTATTTGAGTGAtggttagttctcaaagatgatcttattaaaaaaatatataggtccattatctttCTACATAATTCACATCTCTTTTTAGtaatttaagtttacactgaaaatcCAGAcaattatttattatattaaaattaaatatatatacatacagtaccagtcaaaggttttgaCACAGCTACTCAAGCAAGGCTTTttcttattttctacattgtggaataatagtgaagacatcaaaactatgaaataacacatggaatcatgtaggaaccaaaaaagtgttaaacagattttagattcttcaaagtagccacctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143369 lncRNA upstream 23405 24177290 ~ 24177694 (+) True G124118
TU143368 lncRNA upstream 23948 24176846 ~ 24177151 (+) True G124117
TU143393 lncRNA upstream 28625 24172170 ~ 24172474 (+) True G124139
TU143386 lncRNA upstream 37198 24163695 ~ 24163901 (+) True G124132
TU143384 lncRNA upstream 38286 24162565 ~ 24162813 (+) True G124130
TU143426 lncRNA downstream 6885 24245563 ~ 24250400 (+) True G124146
TU143455 lncRNA downstream 12261 24250939 ~ 24253089 (+) True G124170
TU143460 lncRNA downstream 17067 24255745 ~ 24256051 (+) True G124175
TU143461 lncRNA downstream 17518 24256196 ~ 24256496 (+) True G124176
TU143517 lncRNA downstream 85620 24324298 ~ 24324536 (+) True G124225
XM_021625689.2 mRNA upstream 865 24190890 ~ 24200234 (+) False LOC110538727
XM_021625704.2 mRNA upstream 865 24190921 ~ 24200234 (+) False LOC110538727
XM_036943161.1 mRNA upstream 865 24190941 ~ 24200234 (+) False LOC110538727
XM_021625697.2 mRNA upstream 865 24191081 ~ 24200234 (+) True LOC110538727
XM_036943136.1 mRNA upstream 76285 24106645 ~ 24124814 (+) True LOC110538661
XR_005035955.1 mRNA downstream 21710 24260388 ~ 24269223 (+) False LOC110538776
XM_021625747.2 mRNA downstream 21710 24260388 ~ 24270406 (+) False LOC110538776
XM_021625762.2 mRNA downstream 21710 24260388 ~ 24270406 (+) True LOC110538776
XM_036943200.1 mRNA downstream 57489 24296167 ~ 24317057 (+) False LOC110538793
XM_021625772.2 mRNA downstream 57491 24296169 ~ 24320738 (+) True LOC110538793
TU143372 other upstream 52506 24146861 ~ 24148593 (+) True G124121
TU143245 other upstream 319463 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other upstream 319463 23861917 ~ 23881636 (+) True LOC110538497
TU143220 other upstream 375597 23824693 ~ 23825502 (+) True G123980
TU141439 other upstream 1389836 22810767 ~ 22811263 (+) True G122459
TU143399 other downstream 302326 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other downstream 302326 24541004 ~ 24543611 (+) True LOC110538915
TU143765 other downstream 634373 24873051 ~ 24873834 (+) True G124451
TU144043 other downstream 1138806 25377484 ~ 25382312 (+) True LOC110534557
TU145423 other downstream 1444202 25682880 ~ 25757853 (+) True G125934

Expression Profile