RNA id: XM_021625819.2



Basic Information


Item Value
RNA id XM_021625819.2
length 1548
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110538837
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24338725 ~ 24342581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTGTATCATGGGAAGGAGGAGTCTTATGACACATGGTCACTTTATTACGTAGTTTCTGCTGAGTCTTCACAAGAAGGTAGAAGAGAAAACCGGTTAAGCAAATTCGAGCTGTTTTAGATTGAGAGCACAGCAATCGACAAAATATGCCACCAGGATTCAGCCCCCGGGGTGGTGATCGAGGAGGCAGAGGAGGCTTCCGAGGAAGAGGAAGCTTTGGAGACAGAGGTGGTGGACGGGGAGGTTTTGGAGATAGAGGGGGACGGGGAGGGTTCAGAGGAAGAGGTGGTGGAGGTGGATTTAGGTCTCCAAGTGGCGAGGGTGGCTTCAGAGGCCGTGGAGGTGGTCGTGGCACCCCCAGGGGTAGAGGTGGACGCGGGGGCTTCGGCGCAGGCCGGAAAGTCACAGTGGAGCCTCATAGACATGAAGGTGTGTTCATCTGCCGTGGTAAGGAGGATGCCCTGGTGACAAAGAACATGGTAATTGGAGAGTCTGTGTATGGAGAAAAAAGGATGAATGTCGAGGAAGGAGAAACGAAGATTGAGTACAGAGCGTGGAACCCTTTCCGGTCAAAGCTGGCAGCAGCCATCTTGGGAGGAGTTGACCAGATCCACATCAAACCTGGCTCGAAGGTCATGTACCTGGGAGCTGCATCAGGGACGACAGTGTCCCACGTATCAGACATCGTTGGACCTGAGGGTCTTGTGTATGCTGTAGAGTTCTCTCACAGGTCAGGGCGTGATCTACTCAACGTTGCCAAAAAGAGAACCAATATCATTCCCATCATTGAGGACGCCCGGCATCCACACAAATACCGCATGCTTGTTGGCATGGTAGATGTCATCTTCGCTGATGTGGCCCAGCCTGATCAGACCAGAATTGTTGCACTCAACGCCCACAACTTCCTCAAGAACGGAGGGCACTTTGTCATCTCAATCAAGGCAAACTGCATTGACTCAACGGCAGCACCAGAGGCTGTGTTTGCTGCGGAGGTGAAGAAGATGGGCTCAGAAAACATGAAGCCCCAGGAGCAGCTGACACTGGAGCCTTATGAGAGAGATCACGCCATCGTAGTAGGAATCTACAGGCCTGCCCCCAAGAATAAGAAGTGAACTGGCCCTTACCAGCTGTGGCATAGTGACTTTTTCTGTGGACCCACCTCtgccatgagggggggggggtgcccaGCACCGGGGCACTGATTGGACCCCCACATGCTTACACCCATATCCGAACTGACCATTTTAGTGTTGCTGTCTCCAGAGCTCGGACAGTTGCTTGTCTGTCGCTTTAGACGTACCTAACTGTTTTTGTGTCTGGGGAGAGGGTGTTGGGGTGGAAATCACTTGCTAATTAACTCTGTAGTGCCATGTAAAGTACTGTACAGAGGGAAAGCTTGATATGTTGATTTAACTTTTTTAGGGTTTTGTTTAATATTTACATATGTAATCTTATGCTTTTTAAAGAGCAACTATTTCTGTTTATCATTGAAGTCAAAGACAATTGTTTTTCCTTGATGTTAAAACAAGACTATGGCTTACACCTACCTA

Function


GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0005730 nucleolus cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14563 NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU143521 lncRNA upstream 9718 24328797 ~ 24329007 (+) True G124229
TU143520 lncRNA upstream 10446 24327939 ~ 24328279 (+) True G124228
TU143517 lncRNA upstream 14189 24324298 ~ 24324536 (+) True G124225
TU143461 lncRNA upstream 82229 24256196 ~ 24256496 (+) True G124176
TU143460 lncRNA upstream 82674 24255745 ~ 24256051 (+) True G124175
TU143541 lncRNA downstream 31604 24374185 ~ 24374593 (+) True G124249
TU143477 lncRNA downstream 38808 24381389 ~ 24382923 (+) True LOC110538803
TU143560 lncRNA downstream 130693 24473274 ~ 24473563 (+) True G124268
TU143565 lncRNA downstream 137684 24480265 ~ 24492460 (+) False G124270
TU143567 lncRNA downstream 137684 24480265 ~ 24486653 (+) True G124270
XM_021625772.2 mRNA upstream 17987 24296169 ~ 24320738 (+) True LOC110538793
XM_036943200.1 mRNA upstream 21668 24296167 ~ 24317057 (+) False LOC110538793
XM_021625747.2 mRNA upstream 68319 24260388 ~ 24270406 (+) False LOC110538776
XM_021625762.2 mRNA upstream 68319 24260388 ~ 24270406 (+) True LOC110538776
XR_005035955.1 mRNA upstream 69502 24260388 ~ 24269223 (+) False LOC110538776
XM_036943224.1 mRNA downstream 1300 24343881 ~ 24467486 (+) False LOC110538803
XM_036943210.1 mRNA downstream 38550 24381131 ~ 24467486 (+) False LOC110538803
XM_036943213.1 mRNA downstream 38551 24381132 ~ 24467486 (+) False LOC110538803
XM_036943214.1 mRNA downstream 38551 24381132 ~ 24467486 (+) False LOC110538803
XM_036943220.1 mRNA downstream 38552 24381133 ~ 24467486 (+) False LOC110538803
TU143372 other upstream 190132 24146861 ~ 24148593 (+) True G124121
TU143245 other upstream 457089 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other upstream 457089 23861917 ~ 23881636 (+) True LOC110538497
TU143220 other upstream 513223 23824693 ~ 23825502 (+) True G123980
TU141439 other upstream 1527462 22810767 ~ 22811263 (+) True G122459
TU143399 other downstream 198423 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other downstream 198423 24541004 ~ 24543611 (+) True LOC110538915
TU143765 other downstream 530470 24873051 ~ 24873834 (+) True G124451
TU144043 other downstream 1034903 25377484 ~ 25382312 (+) True LOC110534557
TU145423 other downstream 1340299 25682880 ~ 25757853 (+) True G125934

Expression Profile


XM_021625819.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 100.
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XM_021625819.2 Expression in each Bioproject

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XM_021625819.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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