Item | Value |
---|---|
RNA id | XM_021625819.2 |
length | 1548 |
RNA type | mRNA |
GC content | 0.50 |
exon number | 8 |
gene id | LOC110538837 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_048566.1 |
NCBI id | CM023220.2 |
chromosome length | 103806877 |
location | 24338725 ~ 24342581 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
species | rainbow trout (Oncorhynchus mykiss) |
id | name | namespace |
---|---|---|
GO:0006364 | rRNA processing | biological_process |
GO:0008033 | tRNA processing | biological_process |
GO:0032259 | methylation | biological_process |
GO:0005730 | nucleolus | cellular_component |
GO:0008168 | methyltransferase activity | molecular_function |
GO:0003723 | RNA binding | molecular_function |
id | description |
---|---|
K14563 | NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU143521 | lncRNA | upstream | 9718 | 24328797 ~ 24329007 (+) | True | G124229 |
TU143520 | lncRNA | upstream | 10446 | 24327939 ~ 24328279 (+) | True | G124228 |
TU143517 | lncRNA | upstream | 14189 | 24324298 ~ 24324536 (+) | True | G124225 |
TU143461 | lncRNA | upstream | 82229 | 24256196 ~ 24256496 (+) | True | G124176 |
TU143460 | lncRNA | upstream | 82674 | 24255745 ~ 24256051 (+) | True | G124175 |
TU143541 | lncRNA | downstream | 31604 | 24374185 ~ 24374593 (+) | True | G124249 |
TU143477 | lncRNA | downstream | 38808 | 24381389 ~ 24382923 (+) | True | LOC110538803 |
TU143560 | lncRNA | downstream | 130693 | 24473274 ~ 24473563 (+) | True | G124268 |
TU143565 | lncRNA | downstream | 137684 | 24480265 ~ 24492460 (+) | False | G124270 |
TU143567 | lncRNA | downstream | 137684 | 24480265 ~ 24486653 (+) | True | G124270 |
XM_021625772.2 | mRNA | upstream | 17987 | 24296169 ~ 24320738 (+) | True | LOC110538793 |
XM_036943200.1 | mRNA | upstream | 21668 | 24296167 ~ 24317057 (+) | False | LOC110538793 |
XM_021625747.2 | mRNA | upstream | 68319 | 24260388 ~ 24270406 (+) | False | LOC110538776 |
XM_021625762.2 | mRNA | upstream | 68319 | 24260388 ~ 24270406 (+) | True | LOC110538776 |
XR_005035955.1 | mRNA | upstream | 69502 | 24260388 ~ 24269223 (+) | False | LOC110538776 |
XM_036943224.1 | mRNA | downstream | 1300 | 24343881 ~ 24467486 (+) | False | LOC110538803 |
XM_036943210.1 | mRNA | downstream | 38550 | 24381131 ~ 24467486 (+) | False | LOC110538803 |
XM_036943213.1 | mRNA | downstream | 38551 | 24381132 ~ 24467486 (+) | False | LOC110538803 |
XM_036943214.1 | mRNA | downstream | 38551 | 24381132 ~ 24467486 (+) | False | LOC110538803 |
XM_036943220.1 | mRNA | downstream | 38552 | 24381133 ~ 24467486 (+) | False | LOC110538803 |
TU143372 | other | upstream | 190132 | 24146861 ~ 24148593 (+) | True | G124121 |
TU143245 | other | upstream | 457089 | 23861917 ~ 23881636 (+) | False | LOC110538497 |
TU143247 | other | upstream | 457089 | 23861917 ~ 23881636 (+) | True | LOC110538497 |
TU143220 | other | upstream | 513223 | 23824693 ~ 23825502 (+) | True | G123980 |
TU141439 | other | upstream | 1527462 | 22810767 ~ 22811263 (+) | True | G122459 |
TU143399 | other | downstream | 198423 | 24541004 ~ 24544226 (+) | False | LOC110538915 |
TU143400 | other | downstream | 198423 | 24541004 ~ 24543611 (+) | True | LOC110538915 |
TU143765 | other | downstream | 530470 | 24873051 ~ 24873834 (+) | True | G124451 |
TU144043 | other | downstream | 1034903 | 25377484 ~ 25382312 (+) | True | LOC110534557 |
TU145423 | other | downstream | 1340299 | 25682880 ~ 25757853 (+) | True | G125934 |