RNA id: TU143400


Basic Information

Item Value
RNA id TU143400
length 1411
RNA type TUCP
GC content 0.52
exon number 6
gene id LOC110538915
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24540963 ~ 24544247 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAAATCCTCTAGATGGCACTCTGCAGATTTGCAACAATCGCAGCTTGTGTTATGAAGCTGTGTTTACGTTGGTGAACTAAAATTGTAAACAAAATGAGTTGCTTATGGATGGGTAACTTAGAGCCTTATATGGACGAGAAGTTCATCTCTCGTGCATTCGCCACCATGGGAGAGCTTGTGGTGGGGGTGAGAATCATCCGGAACAAAATGAACTGGGGTGCGGCAGGCTATTGCTTTGTTGAGCTGGCGGACGAGGCCACTGCTGAGAGGTGTCTCAGGAAAGTTAACGGGAAGCCTCTCCCTGGAGCCACACCGGTACAGGGCCACCACACACAGCACTTAATGATTCCACATTGATTTCCAATCCCGAATCAACCCATAGCCCCTACCTACTACACCTATTTCAGGCACTCTGAGAGGATTGGATAAGTATAGGGCATATGGTGAACTATTGATATACCCATTAACTTTATTAGAGATAAATAACGTCTGGAATAATCCATTCTGAACAAAACACTCTCTTCTCTACAGCCGAAGAGGTTCAAACTAAACCGTGCCACGTACGGAAGACAAGGAGAGAACAGAGGTGGTTACTCAGACAACAGGTACAGTCAGCCATACtcgtacaacaacaacaaccagtactaCCAACAGTACCCTGACTACTACTCCAACTGGGGCTATGACCAGAACACGGGCAGCTACGGAGGTTACAACTACAACCACTATGACTATAGTAACCAGGGTTATGGGGAGACTGAAGATGATGGACTGGAGTACCCCATGGTGGCATTGGATGTGGTGGCTGCCAACAGGCAGTAcatggaggagagtgaggagCTGTATGATGCCCTCACAGACTGCCACTGGCCTGCCCTGGAGCCTCCTGGTCCTACTGCTGTTGCACCATCCATGGCACAGTAGAGCTAGCAGACCCCCTGGTCGACAGACAGCAACAGTCAGACTCTCTCAACCTCTCGATGTGGATTGTTTGGAACAGCCCAGTGTGAAGGTTCAAAGGGTAAAGGCATCTCGTCCTGCCTGCCAAGAGTAGCTGGTCTTCAGTGTATGGTACTCTTGCAATGGGCTAAGCGAACAGACCACAGTGTATGATTTGTGTGAACCCAGCTCCAGTGACTGAAAGGATGCTCCCCTCATGTTTGAATTTTTATTGCTCACCCCCACTCATTTATTTTGGGTTATTGGGCACTGGTTTTGTTCTAATTGATTGCCCAATGAACAGGCTTGTTTCGGTACTTGATGTCTTTGTAATCATCTTAAAGGACCGCAGTGCGAGTATTAGCCTATGTCTTTTCCCTCCCTCACATAGCTACCTTGTCATATTTATTGTCCACACTGGAAAATAGAATAAGATTGAAATATAATCCCTATTCGACACCCCATTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143569 lncRNA upstream 27260 24493902 ~ 24513744 (+) True G124272
TU143565 lncRNA upstream 48544 24480265 ~ 24492460 (+) False G124270
TU143567 lncRNA upstream 54351 24480265 ~ 24486653 (+) True G124270
TU143560 lncRNA upstream 67441 24473274 ~ 24473563 (+) True G124268
TU143477 lncRNA upstream 158081 24381389 ~ 24382923 (+) True LOC110538803
TU143617 lncRNA downstream 61463 24605074 ~ 24609740 (+) True LOC110534541
TU143667 lncRNA downstream 164952 24708563 ~ 24708768 (+) True G124363
TU143671 lncRNA downstream 169451 24713062 ~ 24742173 (+) True G124366
TU143742 lncRNA downstream 300605 24844216 ~ 24844538 (+) True G124437
TU143745 lncRNA downstream 312026 24855637 ~ 24856057 (+) True G124440
XM_021625878.2 mRNA upstream 8891 24525746 ~ 24532113 (+) False LOC110538900
XM_021625883.2 mRNA upstream 8891 24525753 ~ 24532113 (+) True LOC110538900
XM_036943276.1 mRNA upstream 16369 24508410 ~ 24524635 (+) False LOC110538870
XM_021625904.2 mRNA downstream 4784 24548395 ~ 24556963 (+) False LOC110538932
XM_021625917.2 mRNA downstream 4784 24548395 ~ 24556963 (+) False LOC110538932
XM_021625911.2 mRNA downstream 4787 24548398 ~ 24556963 (+) True LOC110538932
XM_021625928.2 mRNA downstream 24876 24568487 ~ 24570741 (+) True LOC110538956
XM_021625937.2 mRNA downstream 27473 24571084 ~ 24578116 (+) True LOC110538967
TU143372 other upstream 392411 24146861 ~ 24148593 (+) True G124121
TU143245 other upstream 659368 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other upstream 659368 23861917 ~ 23881636 (+) True LOC110538497
TU143220 other upstream 715502 23824693 ~ 23825502 (+) True G123980
TU141439 other upstream 1729741 22810767 ~ 22811263 (+) True G122459
TU143765 other downstream 329440 24873051 ~ 24873834 (+) True G124451
TU144043 other downstream 833873 25377484 ~ 25382312 (+) True LOC110534557
TU145423 other downstream 1139269 25682880 ~ 25757853 (+) True G125934
TU145896 other downstream 1506239 26049850 ~ 26050104 (+) True G126387
TU146263 other downstream 2083238 26626849 ~ 26628649 (+) True G126727

Expression Profile