RNA id: XM_036943401.1


Basic Information

Item Value
RNA id XM_036943401.1
length 8442
RNA type mRNA
GC content 0.53
exon number 43
gene id ascc3
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25151016 ~ 25291524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAATAAATGTACTACAATACCCACTACTCCACCTTTGACGACCATCTGACGTAAACGCTTCTGAAAGTGTAGAAACATCAGAAATATACTGTGTTTGGTAGAATCTTATGGACCACAGAGTGGTAGGCAAACAATGTCTCCACCCCGGCTCACCGGCGCCCTGCGCTCCTTCTCTACTGTCAGCAAGCAGGAAGACTTCACTGAAGAAGTATATGATCTGAAGACCAAGCGTCTGAAGAGGCAGGAGCTGTTCTCCAGAGAGGGCCTGACATGGCAGAAGATAGTCCAGTTTTTCACTCAGCACTTGGAGAAGGCAGAGCAGCAGGCtgcagcacaggagctgaagagCATCCTACAGGCTGCCAAGCAGATAGTGGGGACAGAGCATGGCCAGGACACCATTGAGAGTGCTGCTGTCTTCCTGTTTGAGACGTTCCACAACAAGGACCATGTGGGTCACGAGGAGACGAGGGCCATCAAGCAGATGTTTGGGCCCTTCCCTTCCTCGGCAGCTGACGCCTCCTGTGCTGCTGTGTCCCGGGCTGTGGCCCCTCTGGAAGAGTCCCAGGTGGAGGAGTTTGTTCGTTCCCAGAGCTCCTGTCGCGCCCCTCAGCGCGGCTCGGCCTTCGGACGCAACATCACCTTCTCCTATGACTGTTACACCCTGGACCCCCAGGAGGCCCTGCCCTGGGCGGGGGGCCCTGAAGACGAGACCCCTGGTGGAGGCCTGGACTTCCACAGCTTCCTCAACAACCACCAAGGTCGCAGGGGTAATGGGGGAGAGGCGGATGGAGGCAGGCTAAGCCCGGGAGGGGCTCAGAGCTCTGGGGATGGGACCATCctgagaggggaggtggagaagtACCTGAACGGAGGCAACATGATCTCCTCCAGCCCTGAGGAACTGTGCACCTCCCTGTTTGAGATGCTGGCCTCCACCAAGAGTGACGACGAGCTGCAGAATGAGCTGTTTGAGTTGCTGGGCCCAGAGGGATTTGAGATgatctctgttctcctccagagaAGGTCTTCTATCGTGGACTCTCTCCTTTCCATCCCTGCAGACAGGATCAACTACCCACCAGATGGTAGCCGTGGAGGTGAAGGGGGCAGCAAGCCCACGTACGGCTGTCAGGTGACCATCCAGtcggggaaggagaaagagatgatGAAGATGCACCGGAGGGAGGAGAagcgggagaggaagaggggggagagacgtTGGGATGACACCGAATCCTCTTCCGACCTCTACTTTGACCCCAAGGAGATGAGAGCTCAGAGAGAGCAGGCCCTGCTGACAGCACGGCGGTCTCCAGTGCTGAGCAGAGAGCGGGTGTACGAACGCATCCGCTACCCCAACGTCTATGACTGCTACGCCGAGGCCACCAAGACCTCCGCCTTCGTAGGGGGAGCCAAGCTGATGTTACCcgaggggataaagagagagaataataaGATGTATGAAGAGGTGGCGATTCCTCCTAGTGATCCCATGTCCATCGGCTTTGAGGAGAAACCCATCTACATCTCTGAACTGGACGAGATTGGTCAGTTGGTGTTTAAGGGGATGCAGCGTCTGAACAGGATCCAGTCCATAGTGTTTGAGACAGCCTACAACACCAATGAGAACCTGCTCATCTGTGCCCCCACCGGAGCCGGCAAGACCAACATCGCCATGCTGACAGTCCTCCATGAGATCAGACAGCACCTCCAACCTGGAGGGGTCATCAAGAAGGATGAGTTCAAGatAGTGTATGTAGCTCCTATGAAGGCCCTGGCAGCAGAGATGACGAACTACTTCAGTAAGCGGTTGGAGCCACTGGGCATTGCTGTCAAAGAGCTCACTGGAGACATGCAGCTAACCAAAGGGGAGATCCTGCGTACACAgATGCTGGTGACCACCCCTGAGAAGTGGGACGTGGTGACCAGGAAGAGCGTTGGAGACGTGGCCCTGTCCCAGATTGTAAAGCTCCTCATCCTGGACGAGGTGCATCTGCTACACGAGGACAGAGGACCAGTTCTGGAGAGCCTGGTGGCCAGGACACTACGACAGGTGGAGTCAACCCAGAGTATGATCCGTATCCTGGGTCTGTCGGCCACGCTGCCCAACTACTTGGACGTGGCCTCCTTCCTCCATGTCAACCCCTACATCGGACTCTTCTACTTCGACAGCCGCTTCAGACCCGTGCCCCTCGGACAGAGCTTCGTCGGCATCAAGACCACCAACAAGATCCAGCAGCTTCATGATATGGAGGAGGTTTGCTATGAGAAGGTTCTGGAGCAGATCAGAAATGGACATCAGGTGATGGTGTTTGTCCATGCTCGTAATGCCACGGTGAGGACAGCCATGGGGCTGATCGAGATGGCTAAGAACCGGGGAGAGTCTTCCTTCTTCCAGCCAGACCATGGACCTGACTACGGCCAGTGTGAGAAATCAaTCCAGCGTTCCAGGAACAAGCAGATGAAGGAGATGTTCCCAGATGGTTTTGGGATCCACCACGCTGGGATGCTGCGTGCTGACCGTAGCCTGATGGAGAGCATGTTCTCCAGGGGTTACCTCAAGGTTCTGTGCTGTACTGCCACACTGGCCTGGGGAGTCAACCTGCCTGCACACGCTGTCATCATCAAGGGCACCCAAATCTACGATGCTAAGCGTGGTACCCTGGTAGACCTGGGCATCCTGGATGTGATGCAGATCTTCGGGCGTGCCGGGCGGCCCCAGTTCGACAAGTACGGCGAGGGCACCATCATCACGGCACATGACAAGCTGAGCCACTACCTCACCCTGCTCACCCAGCAGAACCCCATAGAGAGCCAGTTCCTAGAGACCATGGCTGACAACCTTAACGCTGAGgtaTCACTAGGAACTGTGACTAACGTGGAGGAAGCAGTGAGGTGGCTGAGTTACACCTACCTGTACATCCGCATGAGAGCCAACCCTCTGGCCTACGGGATCAACCACAAGGCCTACCAGatGGACCCAGGTCTGGAGCTGTATCGTAAGGAACTGGTGGTGATGGCAGCCAGGAAGCTGGACAAGGCCAGGATGATCCGCTTCGAGGAGAGGACAGGATACTTCGCCTCCACTGACCTGGGCAGAACCGCCAGTCACTTCTACATCAAATACAACACCATGGAGaCGTTCAATGAGCTGTTCAACTCCCAGAAGACAGAGGCTGACATCCTCAGCATCGTCTCCAAGGCCGAGGAGTTTGAACAGGTCAAGgTGCGTGATGAGGAGATGGAGGAACTAGAGCAGATGCTGTGTAACTACTGTGAGCTGCCTGCTGCAGGCGGAGTGGAGAACGGATACGGCAAGATCAACATCCTACTGCAGACCTACATCGGCCGGGGAGAGGTGGACAGCTTCTCCCTCATCTCAGACCTGTCCTACGTAGCACAGAACGCAGCTCGTATCGTCAGGGCTCTGTTTGAGATTGCTCTGAGGAAACGCTGGCCTGCCATGACCTACCGCCTGCTCAACCTGTGTAAAGTGATAGACAAGCGTCTGTGGGGCTTCGCTCACCCCCTGAGACAGTTCTCCATCCTGCCTCACAACGTGCTGGCCCGTCTGGAGGAGAAGAAACTCACTGTGGACAAACTGAAAGATATGCAGAAGGACGAGATAGGTCACATGCTTCACCACGTGAACATCGGGTTGAAGGTGAAGCAGTGTGTCCACCAGATCCCTTCCATACTTATGGAGGCCACCATCCAACCAATCACACGCACTGTGCTCAGGGTCCGCCTCCAGATCACCCCCGACTTCCAGTGGCACGACCAGtGTCATGGTTCAGTGGGAGAGCCCTGGTGGCTGTGGGTAGAGGACCCCATCAACGATCACATCTACCATTCAGAGTACCTGCTCCTACAGAAGAAACAGgtGGTGAGTGGGGAGCCCCAACAGGTGGTATTCACCATCCCTATCTTTGAGCCCATGCCCTCCCAGTACTACATCAGAGCTGTGTCAGACCGCTGGCTGGGCTCAGAGGCTGTCTGCATCATCAACTTCCAACACCTCATCCTGCCTGAAAGACATCCCCCAcatactgAGCTGCTGGACCTGCAGCCGTTGCCCATCACCGCCCTGGGGAACCTGGAGTATGAGAGTCTGTACAAGTTCACCCACTTCAATCCCATCCAGACACAGATCTTCCACACGCTCTACCACACCGACACCAACGTCCTGCTGGGGGCGCCAACGGGCTCCGGTAAAACCATCGCTGCCGAGTTGGCCATGTTCCGAGTCTTCAACCAGTACCCTACCTCCAAGGTGGTGTACATTGCCCCTCTGAAAGCTCTGGTCAGGGAGAGGATTGAGGACTGGAAGATCAGGATAGAGGAAAAACTGGGGAAGAAGGTCGTGGAGCTGACAGGTGATGTGACTCCAGACATGCGGGCCATCGCCGCGGCCGACCTGATCGTGACCACGCCGGAGAAGTGGGACGGCGTGAGTCGCTCCTGGCAGAACCGCAGCTACGTCCAGAAAGTAGCCATCCTCATCATCGACGAGATCCACCTGCTAGGGGAGGACAGAGGTCCTGTGCTGGAGGTCATAGTGTCCAGGACCAACTTCATCTCCTCTCACACCAACAAGACTGTCCGCGTGGTGGGCCTGTCCACGGCCCTGGCCAACGCACGAGACCTCGCCGACTGGCTAGGGATTGGACAGGTGGGTTTGTTTAACTTCCGTCCCTCTGTGCGTCCCGTCCCATTGGAGGTTCACATCCAAGGCTTCCCAGGACAGCACTACTGCCCCCGCATGGCCAGCATGAACAAGCCTGTGTTCCAAGcgatTCGCAGTCACTCTCCAGCCAAGCCTGTTCTGATCTTTGTGTCGTCGCGGCGACAGACTCGTCTGACGGCTCTAGACCTGATAGCCTTCCTGGCCACCGAGGACGACCCTAAACAGTGGCTGCACCAGGACGAGACTCAGATGACAGACATCATCGCCACGGTGAGGGAGTCCAACCTGAAGCTGACGTTGGCGTTTGGTATCGGCATGCACCACGCTGGACTACACGAGCGAGACAGGAAGACTGTGGAGGAACTGTTTGTCAACTGCAAGATCCAGataCTGATAGCCACCAGTACTCTGGCCTGGGGAGTCAACTTCCCTGCCCATCTGGTCATTGTCAAAGGTACTGAGTACTACGATGGGAAGACCAGACGCTACGTGGACTACCCCATCACAGACGTGCTGCAGATGATGGGCCGTGCAGGCCGCCCTCAGTATGATGACCAGGGCAAAGCTGTGATCCTGGTCCACGACATCAAGAAAGACTTCTACAAGAAGTTCCTCTACGAACCCTTCCCTGTTGAGTCCAGTCTCCTCGGTGTCCTGTCAGACCATCTGAATGCTGAGATCGCTGCAGGGACCATCACCTCTAAACAGGATGCTATGGACTATATCACCTGGACGTACTTCTTCCGCAGGCTGGTCATGAACCCCAGTTACTACAGCCTGGATGACATCAGCCACGAGACCATCAACAAGTACCTGTCCAACCTGGTGGAGAGGAGTCTCCGAGACCTGGAGTGTTCCTACTGTATGGAGATAGGAGAGgatgATTGCACCATTGAGGCCCTGACGTACGGTCGTATCTCCTCCTACTACTACCTGAAGCACCAGACAGTCAGGATGTTCAAGGAGAGGCTGAGGGCTGAGCTGCCCATCCAGGACATCCTCTCGGTCCTCACGgATGCTGAGGAGTACGCGGAGCTGCCCGTCAGGCACAACGAGGACCAGCTGAACAGTGAGCTGGCTCAGCGTCTCCCCCTGCAGGTCAACCCCCACAGCTACGACAGCGCCCACACCAAGACCCACCTGCTGCTGCAGGCCCATTTCAGCCGCGCACAGCTGCCCTGCTCCGACTACGGCACCGACACCAAGACCGTGCTGGACAACGCCATACGCATCTGTCAGGCCATGCTGGATGTAGCAGCCAACGAGGGCTGGCTGGTGACTGCTCTCAGCATCTGTAACCTGGTGCAGATGATCGTTCAGGGCAGGTGGCTCAATGACTCCTCTATACTGACCTTACCTACCATAGAGCAGCAGCACCTCTACCTGTTCAGCAGGTGGAGCTCCAAGGGAGGGAAGGGCGGCGCCAGGGGCTTCCACGGACCAATAGAAGGGCTCCCTGAGCTGATTGCCACCTGCGAGGGGCGGGAGAACACCTTCGCTGCCATTGTGGGGGAGGAGCTTCAGCCCCATCAGATCTCCCAGgCCTGGTCTTTCCTCAGCCATCTGCCGGTGGTGGAGGTGCGTCTGAGTGTGAAGGGTTGGTGGGAGGGGTGTGGGGAGCAGACAGAGCGCCCCCTCCCTGCGGCCGGGGGGAAGCTCAGGGATGACAGAAGCTGGCTGGAAGTCCACGCTGACCAGGAGTACGTCCTGCAGGTCTCACTGCAGCGCATTAACACCGGCCAGCAGAAGAGGAAGCATGACACTAAGGCCCAGGCCCCCAGGTTCCCCAAGAGTAAGGATGAGGGCTGGTTTCTGGTTCTAGGAGAGGTGGAGCGCAGAGAGCTACTGGCCGTCAAACGCATCGGATACTGCCGACACCGCAGCACCGTTTCCCTGGCCTTCTACACCCCCGTGAAGACCGGAAAgtgtATCTACACGCTATACTTGATGAGTGACAGTTACCTGGGTCTGGACCAGCAGTATGACCTCCACCTCAACGTGACCCCTGCCTGCATCGCTGCCCAGGTCAACAGTGAAGTCACTGAGGCCATGGGAGGCATGTCCGTCAAGTGATACGTCAACATGATGACGTCATCATGAGTGACATGATGACAGTGACTGAAATGAGCATATACAAATGACAATGGCCATGAGCGTCTTTAGACGCCAATGTTCGGTATGTTTACACTGATGATGTGATGGTTGGGATTGTGTGACTGGGGGTTAGCCTTAAAGCAGGGATGTCAAGcacattccatggagggcctagtgtgtgcgggtttttggtttttcctttcaattaagaccttgacaaccaggtgaagggagttccttactaattagtggcCTTATCAATCAAGGACAAGGGATGAGACAAAAACCCTCAGCCACTTTGccttctgtggaatgagtttgacacatgtgcCTTAAAGGGTTCCATGCCTGTCTGGTAATatagagggagggaatgaggatACAGGGTTAAGGAACTAGGGAAAGTCTGGGTCATGGGCTATAAGAAACTGTTGGGCCTAATGGGACCCTCCTGTACAATGATCAGTCAGTCAATAGAAATACTCATGAAAGACGGGGCTGTGATGTTACCTCATCAACATTGTGTAATACAATGAATACCTATTTTGTTGCAGTATATCATATCATTCCCCAGTCATATTATGTCAATTATATTTCCAGGCATTGGTCTACTATCTAAAACTCCCCAAATCCACCAACTTTTGAACGGGTATTGAGAAAAATAAAACCTGATAAACGGTGGCTTGTTTTACTCAGTTGATTTAGGGACTgagagtgggggaggggtggCATATTTTATTGAGACGTTGTTGAGATGAAGAATAACAGTAGTAAGAGAGAGCAACACAAAGCGTGGTGGTTAGCTGCAGGAAAAACGTGGCATCACTGTGTCCAACAGGGAAAAGCTGCTCCCGGAGAGTTTAGTTTATTTAGGCTGGCGGGGTGGAACTGGAATTCTGTGCAGGTGTGTGAAACATGCTTCCCTGTAGTGCTGTGGGGCTACAGGTActgccccccacctccacaaACCTTAGTtgcctcctcctttcctccttcttcctcctctttctttgTGGAAGATTCATCTATAGAAGCTGATCAAACTGACGTAGACAGTCATACAAGGAACAGAAGAACAGAACCATAATACATAGAGGTAAATGTGTAAAGGTGTCTCAAATTGTTTCATTCATTACTATGTTgtaactgtgtttattttcttgGGAGAGCTGACAACTATATTTTAGAACCAAACTTATGAGACAAATTCAGCTGCGTCTTTGTTCTGATTTTTGGATTGTCCAATCAATCGAAGCAGATGTAACTTCTCTGTTGATAGAATATAATGACTTTTGAAAAATACTTTTGCTTGGTTTGAAAAGTCTTGAAATAATTTGGGGGGTTTTTAACTTTGAGATAGTGAACTatatattgttatgttatataTATTACACTTACTATCAATGCCAAAAGACATATCATGCAAATAATTACCAATAAAACCTCCTTATATAAAAAGCACACCATTTCATCTCAAACTACACCGCATGTGCAAATACTTTCTCTACTGACACTCTGTCTGGTTCCACCACCATGTCATTTCTATAGGATACAGTCTATCACTGGGGCCATTTTCCTCTGCTAAGGTTTCATCTGAATATGGTCCTAAAGAACAACTGTCGGTCAGACATGGGTCAAATAAACATGTCAAACAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143914 lncRNA upstream 23835 25126953 ~ 25127181 (+) True G124584
TU143910 lncRNA upstream 33121 25117589 ~ 25117895 (+) True G124580
TU143909 lncRNA upstream 34631 25116088 ~ 25116385 (+) True G124579
TU143770 lncRNA upstream 249948 24879532 ~ 24901068 (+) True G124454
TU143778 lncRNA upstream 259480 24885630 ~ 24891536 (+) True G124459
TU144029 lncRNA downstream 11689 25303213 ~ 25303646 (+) True LOC110534548
TU144069 lncRNA downstream 67116 25358640 ~ 25358874 (+) True G124702
TU144072 lncRNA downstream 70258 25361782 ~ 25362011 (+) True G124705
TU144073 lncRNA downstream 71314 25362838 ~ 25363069 (+) True G124706
TU144078 lncRNA downstream 80924 25372448 ~ 25372667 (+) True G124711
XR_002475853.2 mRNA upstream 427643 24685282 ~ 24723373 (+) True LOC110538989
XR_005035987.1 mRNA upstream 466566 24629435 ~ 24684450 (+) True LOC118936392
XR_005035986.1 mRNA upstream 509379 24629435 ~ 24641637 (+) False LOC118936392
XR_005035985.1 mRNA upstream 516692 24622269 ~ 24634324 (+) False LOC118936392
XR_005035984.1 mRNA upstream 516692 24629435 ~ 24634324 (+) False LOC118936392
XM_036943411.1 mRNA downstream 3119 25294643 ~ 25325656 (+) False LOC110534548
XM_036943419.1 mRNA downstream 3119 25294643 ~ 25325656 (+) False LOC110534548
XM_036943429.1 mRNA downstream 3119 25294643 ~ 25325656 (+) False LOC110534548
XM_036943435.1 mRNA downstream 3119 25294643 ~ 25325656 (+) False LOC110534548
LOC110534557 mRNA downstream 85697 25377221 ~ 25396334 (+) False LOC110534557
TU143765 other upstream 277182 24873051 ~ 24873834 (+) True G124451
TU143399 other upstream 606790 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other upstream 607405 24541004 ~ 24543611 (+) True LOC110538915
TU143372 other upstream 1002423 24146861 ~ 24148593 (+) True G124121
TU143245 other upstream 1269380 23861917 ~ 23881636 (+) False LOC110538497
TU144043 other downstream 85960 25377484 ~ 25382312 (+) True LOC110534557
TU145423 other downstream 391356 25682880 ~ 25757853 (+) True G125934
TU145896 other downstream 758326 26049850 ~ 26050104 (+) True G126387
TU146263 other downstream 1335325 26626849 ~ 26628649 (+) True G126727
TU146777 other downstream 1502686 26794210 ~ 26795762 (+) True G127190

Expression Profile