RNA id: XM_036943429.1


Basic Information

Item Value
RNA id XM_036943429.1
length 5124
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110534548
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25294643 ~ 25325656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGGCTGTTCTCAGATTCTACGGGAGAAATAGGGAGATAGAGTTAAAAACAGAGGAGGGTTTGTAAATTATTTTTGATACACTCGCATCCATAAAGCAGAGATGAGGGAAGTCTAGTGTGCCTCTGCTGTCGTAGTTGAAGTTCTACTGAGGATTTTCGGGGAAACTAGGACATAAGAACAGAAGTGAGAAGAGGTAATATTGCTGCAGATTTCTGGAAAAAAAGTTGGGTTTGGTTGTAATCCGTGCTCCGAGAAGGACATGATATCTTCGGCAACGGTGTGAAGGACCTGAACTCCTCACAGAGATGTTGGGCCCAAGTGGATGTCATGTACAATGAATCTGGAGCTATGGCCGATTACTCCTCATAATATACAGGATACTCAGATCCTTCTTCGCCATCTTAATCTATCCTGGAAGTAACATGGGAATGTTCATATTTTATTTCTGGATTTAGTCAGGAAGGAGAACCGAGCCGCTACAGTGTTATCTTGACGCACCACACAAGTTATCCGCGCCAGAGAAATACAGTTCGTGAAGAGCCGGCGCGTAAAACAGAATGCATGGGAGTCAAAGCAGTAAAATGATATAGAATTGAGATCTGTATGTTGACTGACTTTTATTGTTTGGTGAATTCACGCCAAGGTCGAAGAAAATAgaattatttgaaaatgaaagaaAAATCGAAAAATGCTGCCCGGACTCGACGGGAAAAGGAAAATAGTGAATTCTATGAGCTGGCCAAACTATTGCCTTTACCTTCTGCTATCACGTCTCAACTTGATAAAGCTTCAATTATTCGACTCACAACAAGTTACTTGAAAATGAGAATTGTTTTTCCTGAAGGGCTGGGAGAGTCCTGGGGCCACGTGAGTCGGACTAGATCTCTGGATAATGTTGGGCGAGAGCTGGGATCACATCTGTTACAGACGTTGGACGGGTTCATTTTTGTGGTTGCTCCTGACGGGAAAGTAATGTACATTTCTGAAACAGCATCGGTCCATTTGGGCTTATCACAGGTAGAGCTGACCGGAAATAGTATTTACGAGTACATCCACCCCGCTGACCACGACGAAATGACAGCCGTGCTGACAGCTCACCAACCCTGCCACTCGCACTTTGTCCAAGAATATGAAATGGAACGTTCATTCTTTTTGAGAATGAAATGCGTCCTAGCGAAAAGAAATGCTGGTCTGACATGTGGTGGATACAAGGTGATCCACTGCAGCGGGTACCTAAAGATCCGTCAGTACAGCCTGGACATGTCTCCATTTGATGGCTGCTATCAGAACGTGGGCTTGGTGGCGGTGGGCCACTCTCTACCCCCTAGCGCTGTCACTGAAATCAAACTACACAGCAACATGTTCATGTTCAGAGCCAGCCTTGATATGAAGCTCATCTTCCTCGACTCCAGGGTAGCTGAGCTGACAGGCTATGAGCCCCAGGATCTTATAGAGAAGACGCTCTATCACCATGTCCATAGCTGTGACTCCTTCCACCTGAGATGTGCACACCACTTGTGTGAGTTAGtgctgGTGAAAGGCCAAGTGACCACTAAGTACTATAGGTTCCTGGCTAAGCAGGGTGGCTGGGTTTGGGTCCAGAGCTATGCCACCATCGTACACAACAGCCGTTCCTCCAGACCCCACTGTATCGTCAGTGTCAACTACGTCCTCACGGATACTGAGTATAAAGGACTCCAGCTGTCTCTGGACCAGGTTACAGACACCAAGCCCTCCTTCCCCTTCAGCAGTGCTCCCACCAGCCTCACTGAGAACCGCAGAGCACCCAAGAGCAGAGTGTCCCGAGCTAAGGCCAAGGCTCGACTGTCCCCCTACACACAGTACACTGGTTTCCAGGCCGAGCGGTCAGAGTCGGACCAGGATAGTCCTTGGGCAGGATCTCCCCTCACAGACTCCGCTTCCCCTCAGCTGCTggagcagggggaggggcttggcgcCTCCTGTGCCTACAGGCAGTTCTCAGAGCCACGTCCCCTCTGCTACAGCCTCCCAATCACTGAGGAGCACCACCACCACATCTCCAGCGAAAGCCACCCCCACCTCGACAGACACGGCCACAACCAGACGTGCGAGCGGGGCCGCTGTGAGGCAGGGAGGTACTTCCTGGGTGCTCCCCAGGGTGGGACAGAGGCGTGGTGGGGAGCTGCCCGCTCTGTGCTGCCCCTGGTCAAGACCTCGTCCCTGGAGAATGGAGAGGGATACGAGAGCAGCGTGCCCCACATCACCTCCATCCACAGTCTGCATAACCGTGGCCAATGGGACCAGGACAGTGTGGTCAGCTCGCCAGACGGGGGCTCCGCCAGTGACTCAGGGGACCGTTACCGCGCAGACTACTTCCGGGTCAGCCCCCAGGAGCCGAGCAAGATCGAGACCCTGATCCGAGCCACGCAGCAGATGATCAAGGAGGAGGAGAATCGTCTGCAGCACCGCAGCAAGCTCCACCCAGGCCCTGACACTCCTCTAGGTCCTGCCAATGGCCTCCCGAAGGGCCCCGGACCCAGCTTCACCACTGACTACCCCCAGGGGGTGCTACATAGCGTGTTGTGCCGTGGCCTGGGTCAGGTGATCAGCACCGCATCAagccctgctcctctctccaggctCAGCAGCCCAGGGTCTGATCCCCTCCTCCCCAAGCCCAAAAACTACCTccaacagacaggacagacagacttgTCCCCTCTCCCCCAGCCCCTGCACCACCAGCTTGGCTGTCCAGGCCCCTGCTCAGACTCCTCCCCTGCCCCAGCCCTCTACCCTTCCCACCCCCAAACCCAAATGGGGAGGCCCTATCTGGACAAGCAAGCTGCTGCCTACTCCCTGACGGGCTATGCCCTGGAGCACCTGTATGACCCCAAGAGCCTCAGGGACTTCTGTTCCTCCGCTGGCTCCACCCACTACGACGTGACTTCACACCTGCGCATGCAGGCAGAGCAGGGGCCGGGACACAAGGGGACCTCCGTCATCATCACCAACGGCAGCTAACGCCTGCTTGTCCAATAACACTAAAGGGATGTCTAAAATGTcagcctattccctgtatagggaatagtgtgccatttccCTACAtgctatttttgaccagagcctgtgtagggctctggtcaaaagtaatgcactatatagggaatagggtgccatttcagatgcacacTAAAACACATGAAGAAGAAACTGGATCCATGGAATATTCATTCTATAGCCCAGCCTCAACGGCCTCTTCTGTGTCTTATCCAGCAAAAACATGTTTCCCTTTCTTTTAATCTTTACAGAGCTACATTATTCCATTTGCACTGCCAGAAATAGAGTTTAATTGTGGGAACCTCACCCCTATGGTTGATGATAGGGTTGTGGATATGTTTTGAGTTAACAGGACAGGGGTCAACGTTAGTGCACTTTTTAGTGTTGGTCAGAATccccttatcacaacacaactctaGAGTTAAAGTCAACTAGACCTGGTTAAATTGCTATATTTTTTGTCCGTGCTacagactgtctgtctgctaatacaggactagtgccagtgcactacttttaagaTAATAATTCAGGGGGTACTACAGCatcctcagcacccctactttccGTACCTATGATTAAAGGTGTGCAGTATAGAGATGAAGCAAAAATGACACAAAAAAAACTTCACAGACATCAACAATTATGCAAATTCATTCTATCTATGTTCTCCCTAGTAGGTAAGCTATGGATTAAGGGAAGTGTACCCACACTTTCAGAGAAAGCAAAGGGGGGGATTTAAGGGATACATGCAAGAGATACATATGCCTACATTTACATTGAGACACACAGCAGTTCACCTGGACTGTCAGGTAGCAGGCTTTACTTGGGCTAAATGTCTTGTTGGCGTGGATAACAGCATTTATTAGTGATTTGGTCTGTAGGGGTATAATATCACCTCAGTGAGGATACCAACATTATATACAACCTCTAATGAACAACCTTATTGAGATGTGATTACTGGTAGGCTAAGGACCAATATGATGGCATGGATTGTCTCATTTGCCAAGTGTAGTGGTAAACACTGAGGGGGAATTTAGCATGCTTTCAAGGTAAACACTGAGGGAGTTAGCATGCTAGCAAGGCTGAGGTGTGAGTTAGCATGCTAACAAGGTTGAGGTGGGAGTTAGCTTGCTAACAAGGATGAGGTGGGAGTTAGCATGCTAACAAGGCTGAGGTGGGAGTTAGCATGCTTAGAAGGATGAGGTGTGAGTTAGCATGCTAACAAGGATGAGGTGGGAGTTAGCATGCTAACTAGGCTGAGGTGGGAGTTAGCATGCTTAGAAGGATGAGGTGTGAGTTAGCATGCTAACAAGGATGAGGTGGGAGTTAGCATGCTAACTAGGCTGACGTGAGAGTTAGCATGTGTACCTCCGAGGCATGTCTTGTTAAATTGTCAACAAGGGTAATTGTACAGTTATTGTACAGGAAAGAGATGCCCATTGTTTATCGAACATATGATGAGATGAAGGAAAAATCAAGTGAGGTGAAATGGAGAGATTGTGTCTGATGTGGTTGATCGACTTGTGCACTGTTCTAATATTACAGAATGATGTAGTGGCAACGCTTGCTTGTACCAACATGACATTAGTTAATATTACCATAATAATGAGTTATATGACAATTCATGAAATGTTTTCACGAAGTCATGATACATGCAGCAATATGCAATCCAACCAGTTGGGTAGTCAGTTAGACAGCCTAAATCATTATCACATCTGATCATGATAATGCTTGTTTGTTATAAACTGGCATTACCTTTCTCTAACGCTTCatatcatgtttattatactgtTTTGTAGGCAGTGTGACACATTTATAGCGTTCCCCTGGATTCTGTTGTAAATGTGGTTACCATATCTCTTATATTTATaagtttggatttgtttttgtttttgtcagAGTCTGAATTGTGCTTTTCCAAAGTTATTTATGATGTAAATATGCTGAGAAAAAGACACCACTTTGAAGCACAAGGGAAAAGTTGTATTTATTCAATCAAAACAGTCTGCTTGCATATGAGTGTGTTTGATTTAAACAAATTCTATGAAAAAAATGAATAAACAACACTTTTTCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144009 lncRNA upstream 28642 25264771 ~ 25266001 (+) False G124651
TU144010 lncRNA upstream 28642 25265020 ~ 25266001 (+) True G124651
TU144008 lncRNA upstream 30987 25262397 ~ 25263656 (+) False G124650
TU144007 lncRNA upstream 30987 25263349 ~ 25263656 (+) True G124650
TU143992 lncRNA upstream 63575 25223898 ~ 25231068 (+) True G124635
TU144069 lncRNA downstream 32984 25358640 ~ 25358874 (+) True G124702
TU144072 lncRNA downstream 36126 25361782 ~ 25362011 (+) True G124705
TU144073 lncRNA downstream 37182 25362838 ~ 25363069 (+) True G124706
TU144078 lncRNA downstream 46792 25372448 ~ 25372667 (+) True G124711
TU145145 lncRNA downstream 91464 25417120 ~ 25417500 (+) True G125668
XM_036943401.1 mRNA upstream 3119 25151016 ~ 25291524 (+) False ascc3
XM_036943397.1 mRNA upstream 3119 25151091 ~ 25291524 (+) True ascc3
XR_002475853.2 mRNA upstream 571270 24685282 ~ 24723373 (+) True LOC110538989
XR_005035987.1 mRNA upstream 610193 24629435 ~ 24684450 (+) True LOC118936392
XR_005035986.1 mRNA upstream 653006 24629435 ~ 24641637 (+) False LOC118936392
LOC110534557 mRNA downstream 51565 25377221 ~ 25396334 (+) False LOC110534557
XM_021626013.2 mRNA downstream 77777 25403433 ~ 25414375 (+) True LOC110539045
XM_036943565.1 mRNA downstream 505747 25831403 ~ 25974877 (+) True tsnare1
XM_021626094.2 mRNA downstream 773487 26099143 ~ 26113953 (+) True LOC110539113
XM_021626100.2 mRNA downstream 798057 26123713 ~ 26320714 (+) False cdk14
TU143765 other upstream 420809 24873051 ~ 24873834 (+) True G124451
TU143399 other upstream 750417 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other upstream 751032 24541004 ~ 24543611 (+) True LOC110538915
TU143372 other upstream 1146050 24146861 ~ 24148593 (+) True G124121
TU143247 other upstream 1413007 23861917 ~ 23881636 (+) True LOC110538497
TU144043 other downstream 51828 25377484 ~ 25382312 (+) True LOC110534557
TU145423 other downstream 357224 25682880 ~ 25757853 (+) True G125934
TU145896 other downstream 724194 26049850 ~ 26050104 (+) True G126387
TU146263 other downstream 1301193 26626849 ~ 26628649 (+) True G126727
TU146777 other downstream 1468554 26794210 ~ 26795762 (+) True G127190

Expression Profile