RNA id: XM_021626013.2


Basic Information

Item Value
RNA id XM_021626013.2
length 2764
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110539045
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25403433 ~ 25414375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatattattccagcccagttggaatttagattttgtccactagatgccagcagtgtatgtgcaaagttgtAGACTGAACTAATAAACCATTGCATTTCTATTCAAAACTTTGTATCAAGActacccaaatgtgcctaattggtttattaataacttttcaagttcaaaactgtgcactctcctcaaacaatagcatggtattatttcactgtaatagctactgtacattagacagtgcagttagattaacaagaatttaagctttctgccaatatcagatatgtctatgtcctgggaaatgttcttgttacgtGGACGGAACACCGATCCTGAATTAATATATTCAAAAGCCCTTGATTGTCTTGTGCATCAACTCAGTTCATCTTCACTGCCTGCGGAATATTTAATCCTTAAATAAAACAATGGTGAACAAAGAGAGAATAATTAAATGTCTCTTCTGAAATCATCCCTTTTCAAACATCCACTGATTAATTAAGTGTTTAACCTTAGATTAATAATAGACTGGATTCTGCTGCTTTAATTTCACTCTGTTTTCGTGACAATAAAATAGAGTATGCTTGACCTTTGAACATGATGGATTATTGACAGTATTCCAAAACACAGATCCAGAACGTCTTAAAAGCCACTAGTGCCTTTGCATAAATATTTTCATCGATGGAAAATTGATAAGATCACTCCACGTCGCAGTCCCTTTCTTCTAAAAGTGTAGACTACATATCCTAGCTACCTCCCTCCATTTAACAGCCCTCCAACTCTTTATTGCTCTGCGCATCCTAGCCAAGCGCGCGAGTCCGAAAGCAATTCAAGATGATGTCAATGGAGAGGCGCACCCTCGTTCcgaatccagagagagagagagagagagagcgcacgcAGTGTAAACGCACAGtcCGCCTGCGCTCTTGGGTCTTTTTGGAGATGTCTGTGTTTAACCACTCAAATCTATCAGGCGGAAACGCTCCGGACCCGGACTACAAGTGGACGTATGAATATTACGACGATGATGAGCCTGTTTCGTTCGAGGGACTAAAAGCGCACCGATATTCCATCGTGATAGGCTTCTGGGTGGGCCTGGCTGTCTTTGTCATCTTCATGTTCTTTGTCCTGACGCTTCTCACCAAGACAGGAGCTCCACATCCCGAAGGAGCTGAGCCCTGTAAGAAGCGTGTTCGTCTGACCAGCTGTGTGGAGGACCTCCGCCCCCCTGCAGACCCTGACAACCGGCCCTGCCTCCATCGCCCCTTACTAGACTCCTCTCTCAGCCGCTCCCTCTTCCACTGCTACGTCAATGAGGAACAGGCCCAGGAGGGGTCCAGGCCTAGAGCTGGAACACCCAGAGGAGGGCTTGTCCAGGGGCCAGGGCGAGGCAGGTCAGGCAGCCCAGAGGAGGGGGGTATGGAAGTAGGTGTCACCCGTGCCCTGCAAGGGGCTGCCATGTTGGGGGGGAACCGGACTGACCACAGAGAGGCAATGTCCCTGTCCCACTTCAACATCCCTAACGTTGTGAACTCCGAGCACTGCTCCACCCTGGGGGCGGACGATCTGCTGCTGGGGGAGCCGCCAATCATCATGGAGGGGGAGTGTCATTGGCCCCACAGTGCACATCACATGATGGACTAAGGTCCTCTCTACTTCCTGGGGTGCCGCCAATCATCCCGGAGGGGTAGCGTCATTCCCATGGTGTCCTTCACACGATTGACTGGGGGAACCGTCAATCATCCTAGAGGGGGAGTGTCATCAGCCACTTAGTGCCCTTCAGAAGATGGACTGTCCTGCCCATCACACAATAGACTAGGGTCCTGCTTACTTCTCACACCCACTGCCGTTAGGACATTATAGATAATTATGAGGACATCACAGGACTCATCAGCCTTATATAGAGAGAGTTGTGTCAAGGTCCTAATCTAACATTCTGTGTTGTGCCAGTCATGTACAGTGCAAGCTCTCCTAATTAGGCTGTGGTTCCAGCTTCCCACACCACCTCCACTGTGAGGACATTCTGGATTATTATGGATCCTCCTACAGTAACTGTACCTCCTGACATTTTCATTCTGTACAGATTTGGTTCAGGCTAAAATACTGTACAGTCcaaatatataaacatttaaaTGTTAAATATACATATGTGATATGAGCTACTTTTCTAATCTTTATGTCAACAAGGTTGCCTACGCAGAGCCAGAACTTGTGACGTCACATCTCAACGCTAAACTGGAAGTCCAGCTTCATCAAGttgattcaaatgttttttttatttaactaggcaagtcagttaagaacaaactctaaTTTACACCacggccaaatcctcccctaacccggataatgctgggccaattgtgcgccaccctatggaacCCCCGATAACGGCCTGTTGTGATACATCCCAgaatcgaacctgggtctgtagtgatgctgcGCCACTCGGTCCCCCCGTATAGTGGTGGAGGCCTTCCAGGAATCAGTTAAGGGGATGGAGACAACAGAAGAGGCAAGGGGAATTTGATGCAACAACCAAAATGTACCAGAAAGGCAACACTCTTCTCTTGGGTTTTCAATTCAACAGCAGTCGGAATGTTGTCCTTGTTCAGTACTTATTGTAGTACACCTGTTAatcactataaacaccttactttTTATATACCATGTGTTGCTCCTGTCAATGCTTTACCTACATGTCATATCAAGGTCTCGTCTGCCAAGTCTATAGAAGGTTGTGACTAATAAAACTATTTCAACGCCA

Function

GO:

id name namespace
GO:0006112 energy reserve metabolic process biological_process
GO:0048589 developmental growth biological_process
GO:0030818 obsolete negative regulation of cAMP biosynthetic process biological_process
GO:0040008 regulation of growth biological_process
GO:0097009 energy homeostasis biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0005886 plasma membrane cellular_component
GO:0031782 type 4 melanocortin receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144078 lncRNA upstream 30766 25372448 ~ 25372667 (+) True G124711
TU144073 lncRNA upstream 40364 25362838 ~ 25363069 (+) True G124706
TU144072 lncRNA upstream 41422 25361782 ~ 25362011 (+) True G124705
TU144069 lncRNA upstream 44559 25358640 ~ 25358874 (+) True G124702
TU144029 lncRNA upstream 99787 25303213 ~ 25303646 (+) True LOC110534548
TU145145 lncRNA downstream 2745 25417120 ~ 25417500 (+) True G125668
TU145152 lncRNA downstream 7637 25422012 ~ 25422619 (+) True G125675
TU145160 lncRNA downstream 15367 25429742 ~ 25430246 (+) True G125683
TU145161 lncRNA downstream 17825 25432200 ~ 25432435 (+) True G125684
TU145162 lncRNA downstream 19007 25433382 ~ 25433602 (+) True G125685
LOC110534557 mRNA upstream 7099 25377221 ~ 25396334 (+) False LOC110534557
XM_036943411.1 mRNA upstream 77777 25294643 ~ 25325656 (+) False LOC110534548
XM_036943419.1 mRNA upstream 77777 25294643 ~ 25325656 (+) False LOC110534548
XM_036943429.1 mRNA upstream 77777 25294643 ~ 25325656 (+) False LOC110534548
XM_036943435.1 mRNA upstream 77777 25294643 ~ 25325656 (+) False LOC110534548
XM_036943565.1 mRNA downstream 417028 25831403 ~ 25974877 (+) True tsnare1
XM_021626094.2 mRNA downstream 684768 26099143 ~ 26113953 (+) True LOC110539113
XM_021626100.2 mRNA downstream 709338 26123713 ~ 26320714 (+) False cdk14
XM_021626109.2 mRNA downstream 709338 26123713 ~ 26320714 (+) False cdk14
XM_036943595.1 mRNA downstream 709338 26123713 ~ 26330981 (+) False cdk14
TU144043 other upstream 21121 25377484 ~ 25382312 (+) True LOC110534557
TU143765 other upstream 529599 24873051 ~ 24873834 (+) True G124451
TU143399 other upstream 859207 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other upstream 859822 24541004 ~ 24543611 (+) True LOC110538915
TU143372 other upstream 1254840 24146861 ~ 24148593 (+) True G124121
TU145423 other downstream 268505 25682880 ~ 25757853 (+) True G125934
TU145896 other downstream 635475 26049850 ~ 26050104 (+) True G126387
TU146263 other downstream 1212474 26626849 ~ 26628649 (+) True G126727
TU146777 other downstream 1379835 26794210 ~ 26795762 (+) True G127190
TU146788 other downstream 1443323 26857698 ~ 26861242 (+) False G127198

Expression Profile