RNA id: XM_036943565.1


Basic Information

Item Value
RNA id XM_036943565.1
length 2460
RNA type mRNA
GC content 0.47
exon number 12
gene id tsnare1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25831403 ~ 25974877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGCTGCAGGAGCAGGCGGAATGTCATGTGATGTTTAAGCCGTAGCTGTCTGGAAGCTGCTGCTAAATTGGAGCTGAATCTCAGAGCACACCactaactctccctctctttccagaGGAAGACAGACCCAAAACAGCCAGGACAGGATGTCTTACGGATCCATCGATGGAGGCTCCTTTGGAGGCAGCCGAAACCCCTTCGGAGGCCCCAAGAGGCAGGGCTACCAACCAGTAGCAACACAGGTCAGCTCCTCAGAGCTGCAAGACGTGTTTCAAGAGACCTCCTCCAACATTTTCCAGATCAACGCAAATGTTGTAACATTAGAGAAGAGTCTTCAATCTTTGGGAACGTCCAGAGACACTGCTGAACTGCGACAGAGCCTACATTCTACACAGCAGCAAACGAACAAAGTCATCACCAGCACCAGTCAACTCATCAAACAActctctgacatcatcactggcTCTAcacggCAAGATCGTCTTCGCCTGACTAGACTTAAGACAGAACTCTCAGAGTCGGTTCAACGCTATGGAGATCTGCAAAAGAAAATTGCAGACCGTTCGAGGGCCTTGCTACCCCCGGCACAGACAGAAATGAAGCAGagTCCCCAGACTCCATTTGCAGAGCTGTGTGAGGAGGGGGGTCCCCTGTTTGGCAGTGCAGCAGAGAGCTCCGGGGGGGATGGACAGGAGCAAGCGTTCCTCTCAGAGATCAGTGAGGAAGACGTGGAGGCCCTTCGCCAGAGAGAAGAGGCCCTGCTGCAGATTGAGAGGGACATGTTGGATGTCAGCCAAATCATGCAAGATCTGGCCAGTATGGTGCACGAGCAGGGAGATGCCATAGATAGCATTGAGGACTACATTCAGACCACCACATCCAACGTGGAGTCAGCCAATCAGGAGCTAGCAAAGGCCAGCCATCACCAGAGGCAGATTAGGAAGAGGAAGTGTTACATGCTGGTGGCGGGAGGCTTCATCCTcaccctcctcatcatcatcatcgctgtGTCAGCAAGAAAATGAAACCAACTCCAGAGgTAGCCGCTGTCATAATGCTGTGACCTCGCTGCTTCTGCCCCACCTGACCACCTGATCCCTGACCTGTACCAGCTGTCTCAGAGCAGGAGGGGCCTGCCCCACACCAACACCTCTACTTCGTCATGGCTGTCCCTCCTTGGTTATATAGTTAGATATTTGGTGTGCGcaggtatatgtgtgtgtgtgtgtgtgtggggtgtgtgtgtgtgtgggggggaataGCTGGTACTTCTATTACCATCTTCAAGTGAATGGCATACTAGTCTACTGTGGCTCATTTATACTGTACCTAACTGTGGCAGCCAACCAGCCAATCATGGAAGAGAAGCTTCAGGTGTGGTGTCACCCAGAGCTGTTGATGTATCCACTTACTTTACCCTGTTTTCCTCTGTGTTTGTtaacttgtttttgttttttaaacactGGATCATATTTATCTGATGCTACTGTATCTATGAAGTATGATATTAAAATGTTGTGTAGTACTTATAAATGATCATTAGACAAAAATGTATCAAATGGTATGAAAAAAACCAACAGTACTTTAAAATATGATTCACAGCTTTTTTCATAGTCCTATTTTACTATCATTTTACTCTTGCTATGCAAACACAGGCACACTTGCACACAAACATCTCTATCTGCCATGATCTGAGTGTAAAGAGTGGAACATGTGACATAAATTACATGTTTGTTGATCGCCTGAAGCACTCACCCTCTGGCCAATCAATTGGCAGTAGAGTCAACCACTTTCCCTCCATTCCCTCCAAATGTCTCATCCTGTTACATATTTTCCAGGAAGGCTTATTTAGAGATAGTAATAAATAGACTTAATTAATCTCTCAGAGGGGTGATTATCATCTCTCTGATTTCTCCTCTGGGCTGTATGTGTGTGCTATTACTGAGTTCTCTGAAAAGATGGGTAAGACTCTTCAGTGTGCAGCTTCACTGTCAGCTCCTAGCCTTTTCTGCTTCCAACGTCATACATCCTTCTTTATCACTCTTCCCTCACAATCCCCCGGCATCAGTGGGCTTTAGCTCTTAACTCATCGCATGCATACACAAATCTGAAGtgttttattattgttattttctgtTAGTCTTGCTGAATCATTGTACCAagcttttttattttgttttttaatttgTACCTTGCTGAGAAAAGGAACAAAATGAACCAAAATCACCAAATTGTTTTTCTGAACCAATCACAGGATGTTGGTGGCACTTTAACTAAGGACTCGTGGCAATGGCTGGAGCGGGAATGTTGGAATGGTATTAAAAACATCAAAaacagcctcccgggtggcgcagtggttaagggcgctgtactgcagcgccagctgtgccatcagagtccctgggttcgcgcccaggctctgtcgtaaccgaccgggaggtccgtggggcgacgcacaa

Function

GO: NA

KEGG:

id description
K13814 TSNARE1; t-SNARE domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145447 lncRNA upstream 46500 25727307 ~ 25784903 (+) True G125957
TU145417 lncRNA upstream 99364 25674931 ~ 25732039 (+) True G125930
TU145411 lncRNA upstream 114447 25671258 ~ 25716956 (+) True G125926
TU145416 lncRNA upstream 153051 25674931 ~ 25678352 (+) False G125930
TU145409 lncRNA upstream 160509 25669061 ~ 25670894 (+) True G125925
TU145848 lncRNA downstream 40939 26015816 ~ 26016025 (+) True G126341
TU145884 lncRNA downstream 62752 26037629 ~ 26038230 (+) True G126375
TU145927 lncRNA downstream 113355 26088232 ~ 26093529 (+) True G126418
TU145906 lncRNA downstream 143110 26117987 ~ 26118323 (+) True G126397
TU145905 lncRNA downstream 144931 26119808 ~ 26120179 (+) True G126396
XM_021626013.2 mRNA upstream 417028 25403433 ~ 25414375 (+) True LOC110539045
LOC110534557 mRNA upstream 435069 25377221 ~ 25396334 (+) False LOC110534557
XM_036943411.1 mRNA upstream 505747 25294643 ~ 25325656 (+) False LOC110534548
XM_021626094.2 mRNA downstream 124266 26099143 ~ 26113953 (+) True LOC110539113
XM_021626100.2 mRNA downstream 148836 26123713 ~ 26320714 (+) False cdk14
XM_021626109.2 mRNA downstream 148836 26123713 ~ 26320714 (+) False cdk14
XM_036943595.1 mRNA downstream 148836 26123713 ~ 26330981 (+) False cdk14
XM_021626106.2 mRNA downstream 184671 26159548 ~ 26320714 (+) False cdk14
TU145423 other upstream 73550 25682880 ~ 25757853 (+) True G125934
TU144043 other upstream 449091 25377484 ~ 25382312 (+) True LOC110534557
TU143765 other upstream 957569 24873051 ~ 24873834 (+) True G124451
TU143399 other upstream 1287177 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other upstream 1287792 24541004 ~ 24543611 (+) True LOC110538915
TU145896 other downstream 74973 26049850 ~ 26050104 (+) True G126387
TU146263 other downstream 651972 26626849 ~ 26628649 (+) True G126727
TU146777 other downstream 819333 26794210 ~ 26795762 (+) True G127190
TU146788 other downstream 882821 26857698 ~ 26861242 (+) False G127198
TU147247 other downstream 1173299 27148176 ~ 27160645 (+) True LOC110485212

Expression Profile