RNA id: XM_036943595.1


Basic Information

Item Value
RNA id XM_036943595.1
length 2404
RNA type mRNA
GC content 0.50
exon number 15
gene id cdk14
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26123713 ~ 26330981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAGAATCCCAAAAATGACATCCAGATTGCaggggagcagagcagagagggagagagagactgagtgagaaagagactgggagagagaaagaaagaactcAAAAACCCGTTCAGTTTCAGGGAGAAAACAGAGAATATCAGCCAGCCCATGTTTTATTTTCCAGCTTCATACTTGGCATCTTGTGGAAAATTCCGACTTTAGAAATGTCGTTGGACACAAAGAAAACCTGAGAAGAATACACCAATGTGTTTTTGAAAACAAAAGCGTTAGCATAAACGTTTCCTGTTTCTTGACATCGTAGTAGAACGGAGAACCCCTTGGTTTGAACCCTGCGCTCctctccagttttgtgaagacCACTGTCTGCTGCAGTCCAACCGTCAAGATGTGTGACCTGATGCCAGTTTCGAAACCTGCTGAAAAAATCGGCAAAATGAAAAAGTTGCGAAGAACTTTGTCAGAGAGCTTCAGTCGCATAGCTTTCAAGAAAGAGGACAGTGGCTTTGATGAGatatGTGTCACAAAGATGTCCACACGCAGCGGCCAGGGAAAGGACTCGGTCATCACGCCCCTGGACACCATCCCTGAGGACAGGAAGGTAAGGGTTCAGCGGACACAGAGCGGTTTCGACGCCTTCGAGAAACCCGCCAGCCAGGTGAAGAGGGTGCACTCAGAGAACAATGCCTGTATCTCCTCCAAGGCCTCCTCTACTGGGAAAGAGTCGCCCAAACTGCGCCGACACTCCAGCCCCAGCTCTCCCACAAGCCCCAAGTTCGGAAAGGCTGATTCCTATGAGAAGCTTGAGAAGCTGGGAGAAGGCTCGTACGCTACAGTATACAAAGGAAAAAGCAAGGTGAACGGCAAGCTGGTAGCCCTGAAAGTGATTCGtctacaggaggaggaggggacaccGTTCACCGCCATCAGAGAAGCGTCTCTTCTGAAAGGTCTAAAGCACTCCAACATCGTGCTGCTCCATGACATCATCCACACCAAGGAAACCCTGACTCTGGTCTTTGAGTATGTGCACACAGACCTGTGCCAGTACATGGACAGGCACCCAGGAGGACTGCATCCAGACAACGTGAAGTTGTTCCTGTACCAGTTGCTGAGAGGTCTGTCCTACATCCACCAGAGGTATATCCTGCACCGCGACCTCAAGCCTCAGAACCTGCTCATCTCTGACACTGGAGAACTCAAACTGGCCGACTTCGGTCTGGCACGGGCTAAGTCAGTCCCCAGCCACACCTACTCCAATGAGGTGGTGACCCTGTGGTACCGCCCCCCTGATGTCCTCCTGGGATCCACAGACTACTCCACCTGCCTGGACATGTGGGGTGTGGGCTGCATCTTCATCGAGATGATCCAAGGAGTGGCAGCTTTCCCTGGGATGAAGGACATCCAGGATCAGCTGGAGAGGATATTCCTGGTCCTAGGCACCCCCTGTGAGGATACCTGGCCAGGGGTCCACTCCCTGCCCCACTTCAAACCAGACAGCTTTACTGTCTACAGTTCCAAGAAGCTCAGACAAGCATGGAATAAGTTGGGCTATGTGGACCATGCTGAGGAGTTAGCCTCTAGGTTCCTCCAGTGCTTCCCAAAGAACCGTCTGTCTGCTCAGGCAGCTCTCCAGCATGAGTACTTCAGCCAGCTTCCTCCACGGCTCTGGGAGATCTCAGACATGGCTACTATCTTCACGGTACCAAATGTCAAGCTGCAGGTGGAGTCAGGTGACAGTATACAGGTGTGTACCAGGACCATCTCCAGCCATGCTAAAGGACCGTCCAGCAGCAAACACTGACCGGGGCAGACTGCCCCACAGCTAGCcagaaaGCAGATTACAGTATATTGTACCATGCTGTCCATCTGATCCAGTGAACTTGACCTGCCCCTCACATACACCTGGAAGAGATGTCACACCGGATGTGTCCTTGCTGCCCGGgttccttgggacgtccctacctcattgaagttgacatttaaaatggttggtaagggttaaggttagggtaagggtagggtTGAAGTTTAGGGTATGGACATCCCGAGGATCCCAGATAGCACCCACCACCCCAGATCACATGCCAACATCAATATCTGTCATTTGCTGTTGGTTTTGTTGGAGCAatctcctctctgtcatctctctgagATCATTCTTATGTTTACTTTCCTTACCTACACATTTCATTCCTAAAGCCTTTTCTTTATCTGAAATGAGGAGCCGCTATgtttttggtaacactttatttgccTACTACCTACAGAAGGACTTCATAAGACACAGTACATTTCTGACATCAGGACATGTTTGTATAGAATTTGCATTGCAATTTAGATAAAGCCTTCTGAACCCTTTTCCTGTGCCGTTATTTATGTCGGGCCAATCTGAGGATTATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145905 lncRNA upstream 3534 26119808 ~ 26120179 (+) True G126396
TU145906 lncRNA upstream 5390 26117987 ~ 26118323 (+) True G126397
TU145927 lncRNA upstream 30184 26088232 ~ 26093529 (+) True G126418
TU145884 lncRNA upstream 85483 26037629 ~ 26038230 (+) True G126375
TU145848 lncRNA upstream 107688 26015816 ~ 26016025 (+) True G126341
TU146056 lncRNA downstream 2037 26333018 ~ 26333224 (+) True G126543
TU146058 lncRNA downstream 4576 26335557 ~ 26335980 (+) True G126545
TU146061 lncRNA downstream 7087 26338068 ~ 26338357 (+) True G126548
TU146059 lncRNA downstream 8581 26339562 ~ 26339896 (+) True G126546
TU146062 lncRNA downstream 8936 26339917 ~ 26340149 (+) True G126549
XM_021626094.2 mRNA upstream 9760 26099143 ~ 26113953 (+) True LOC110539113
XM_036943565.1 mRNA upstream 148836 25831403 ~ 25974877 (+) True tsnare1
XM_021626013.2 mRNA upstream 709338 25403433 ~ 25414375 (+) True LOC110539045
LOC110534557 mRNA upstream 727379 25377221 ~ 25396334 (+) False LOC110534557
XM_036943435.1 mRNA upstream 798057 25294643 ~ 25325656 (+) False LOC110534548
XM_021626136.2 mRNA downstream 121700 26452681 ~ 26547503 (+) True LOC110539173
XM_021626143.2 mRNA downstream 248777 26579758 ~ 26581796 (+) True LOC110539182
XM_021626146.2 mRNA downstream 250787 26581768 ~ 26585441 (+) True LOC110539212
XM_036943660.1 mRNA downstream 265284 26596265 ~ 26613437 (+) True LOC110539196
trnar-acg-2 mRNA downstream 310186 26641167 ~ 26641239 (+) True trnar-acg-2
TU145896 other upstream 73609 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 365860 25682880 ~ 25757853 (+) True G125934
TU144043 other upstream 741401 25377484 ~ 25382312 (+) True LOC110534557
TU143765 other upstream 1249879 24873051 ~ 24873834 (+) True G124451
TU143400 other upstream 1580102 24541004 ~ 24543611 (+) True LOC110538915
TU146263 other downstream 295868 26626849 ~ 26628649 (+) True G126727
TU146777 other downstream 463229 26794210 ~ 26795762 (+) True G127190
TU146788 other downstream 526717 26857698 ~ 26861242 (+) False G127198
TU147247 other downstream 817195 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 859010 27189991 ~ 27190593 (+) True G127644

Expression Profile