RNA id: XM_021626115.2


Basic Information

Item Value
RNA id XM_021626115.2
length 3889
RNA type mRNA
GC content 0.46
exon number 1
gene id fzd1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26323007 ~ 26326895 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagagagagacggctcACTGAGACAGCAGGGCGCCTGGAAACAGGTTTCAACAgcgcagagcagagagaggctaTCTCGTTTGTCGCGCAGCTAGAGCAGCAGAAGAACATTGCGGACTCCGGACCTGTGTGTTGTGTATAGTAGGTTGGATTTTCTTCTCCAAATTCTGTCAGCGATATTTTTCGATTTTGGGGGACCTTCAACATCTCTGCGCAACGGCGGGGAGAAGCGAAAACAACCAAAAGTTACGCTGGAAGGGAGTAATGTTACATTTACAAGGAAAGAAAAACCGAACACAGAAAGGGAGCGGGGAAGTAGTGGCTCGCTAGCTGGCGAGCTAGCTAGTTTTGGAAGAAACCGCAAAGAAAGTATGTCTGTGGCCGTGCGTAATGCTTTCGCAATGGATTACAACAGAGTACTGTGTATATTTTTGCAGGTGTTTTTATTGATCAGTTTAGGATCTATAAGGGTAAATGGACAGTATGGCGACCGGGGAATGTCTATTCCGGAGCACGGTTTTTGCCAGCCGATTTCTATTCCACTTTGTACAGACATCGCATACAACGAGACCATCATGCCAAATTTACTAGGACACACAAACCAGGAGGAAGCAGGGCTCGAGGTACACCAGTTTTACCCGCTTGTGAAAGTTCAGTGTTCTCCTGATTTAAAGTTTTTCCTCTGCTCCATGTATGCGCCTGTTTGCACTGTGCTTGAGCAGGCGCTTCCCCCGTGCAGGTCACTGTGCGAGAGGGCGAGACAGGGCTGCGAGGCGCTCATGAACAAATTCGGTTTTCAGTGGCCGGTCAGCCTCGCTTGCGAGTCTTTCCCGGTTCACGGAGCGGGCGAGCTGTGCGTCGGGCAGAATATGTCGGGTCAAAACACACCGGTCAACCCCACCCCTGATGTAACGGAGCCTCCGCACGATACTGCGATTGTAAAAGGACAGTTCAAGTGCCCGGCATCTCTGAAAGTACCCACTTATTTGAATTACCGTTTTCTCGGTGAGGATGACTGTGGCGCACCGTGCGAGCCAAAGAAATCTAACGGAATGATGTACTTCAGCGAGGAAGAGTTAAAATTCGCCAGGATATGGATAGTAATCTGGTCCGTGTTATGTTGTGCATCCACGTTATTTACCGTTCTAACCTATCTGGTGGACATGAAGCGCTTCAGCTACCCTGAGCGTCCTATTATCTTCCTATCCGGTTGCTACACCATGGTGTCCATTGCCTACATAGCTGGATTTCTCCTTGAGGACAAGGTGGTTTGCAATGACAGGTTTGACAACGACATTAGAACTGTGGTGCAGGGTACCAAAAAGGAGGGTTGTACCATCCTCTTCATGATGTTGTATTTTTTCAGCATGGCCAGCTCCATCTGGTGGGTCATCCTGGCCCTCACCTGGTTCCTGGCAGCAGGGATGAAGTGGGGTCACGAAGCCATCGAGGCCAACTCGCAGTACTTCCACCTGGCGGCGTGGGCTGTGCCCGCCATTAAGACCATCACTATCCTGGCGGTGGGCCAGGTGGACGGGGATGTCCTTAGCGGCGTGTGCTTCGTGGGCATCAACAGCGTGGACGCTCTCCGAGGCTTCGTCCTGGCGCCGCTCTTTGTCTACCTCTTCATCGGCACCTCGTTCCTCCTGGCCGGCTTCGTGTCTCTGTTCCGGATCAGAACCATCATGAAGCACGACGGCACCAAGATGGAGAAGCTGGAGAAGCTGATGGTGAGGATAGGGATCTTCAGCGTGCTCTACACCGTCCCCGCCACCATCGTCATCGCCTGCTACTTCTACGAGCAGGCCTTCCGGGAGCAGTGGGAGAGGACGTGGATCAGCCAGACGTGTAAGACGTTCGCCGTGCCCTGTCCGGCCCACCCACACCCCAACATGAGCCCCGACTTCACCGTCTTCATGATCAAGTACCTCATGACTCTGATTGTGGGGATAACGTCCGGGTTCTGGATCTGGTCTGGGAAGACCCTCAACTCCTGGAAGAGGTTTTATACGAGACTGGCtaacaacagacagggagagaccacAGTGTGAATGGTCTGAATGGGGTGAGACCTCTGGATGTACTTTAGCCTATGATGGgtgtcccccacacacacaaaaaaaactgtttatTTACAGACTGAATGAATGATAATCGTTTTTGGACTTAATTGCCATGCAGAGACACTCATTGGGACATGATGTTTCTATTGTACATAAAACATTTTGTGAGATTTTTGTaagtatatatttgtatttaaagATCAAAATTCTCTTTTTTAGTTGTTTCCCTCTATTAAAACCAACATTTATTTGACACACTTTGGGCATAATGAAAATGGACCTATGTGATAAAGAGCCAGCTAACTGAGCATTTAGCATTAAGGATGTGGTTGTCTTAGGACCTGAGTTGGCTTGGTCACTGTTGGGAGAGGGTTGTAGCTGTCTTTGATCAGTAGACTGGCTCTGAACATTGTTTCTATTCTAAGCAGCAGAGTCCCGTGAAAAACAATTGCTTCCTCGTGGGTCCTTATCCCCCATTATACTGTTGTTCTTTCTGTCCAACTGTTCTCTTCTATTCAACATATTTCTAAATGCCTGGGATTTGAAGGTTAAAAATATGATCAACATGTATTTTAAAACAAGGTATAGGTTTGGGACTATGTGTTCAACATATTTCTAAATGCCTTGGATTTGACGGTTAAAAATACAATCAGCATTTTTAAAACAAGAAAGTAGGTAAAGGTTTGGGATTGTGTGCACATGTACTGTGTAGCCTACATGACATGTATCCTCCAAATACACATGTATTTTCATAACCTCAATGAGAATGAGCCAGAATGAGAACATTTAGCCCAAAATAAAGCCCAAATAGTTGCACCAAAGTTAAAAGCCGTCTTTTGGTGACACAATATTGTAATAGAATGAAAGTAAGCCATTTGCAGgatcttttcaacattttgtttatGTGTTTCAGATAGACCTTCTGCCTAtgaacacagaacagacacacGTTGTTTGTGGCTTTGTTTACCTTTTTGAGCACTTTGAGGGgaatactagcctggtcccagatctgtttgtgctgtcttgccaaccccCGAAGAACCATAGGAGTAGGCAGGACAGCACAATCAGGTCTTGGACCAGGCTAGGGGAATACAGAATGCTGGACAGAGACAGCTCCGACTCAGAGGTGGGCTACATAACACATCAGCTGCACCCCCTAATGCtttctcacagacagacagacattcagacaGCTAAAATACCAATACTTTACTAATGAACAAGTTGAAATACGCAGTAGCCTACTCTACAGCCGGCTGTATAATTGCCTTATAAAAACTGAAAACAAATGAATAATTGAAGGAGATAGGACAGTGCGTTTTGTAATTTTCAGACCTACAGGTAATCAGAGTCAGAAAATTATTATTCCCCAGAAGGTAATTGTTGGCAAAATGTGGCTGTATTTTTTACAATGGGCCCAGGTGGCAGCTTTGAGCAGTCCCCTTTCACCCCTGTGTCATTTCTCTCCTGgttaagtgtgtgtttgtgtgtgcacacatgctcgtgtgtgtgtgcgtgtgtgtcggtGCTAACCATGCAGGGTGAGCAGCTGTCTTTAGCCTTAATAAAGCTAGACACCGTGATCTGTCCCCACCTCAGACATCTTCTGTTATGTTCTTGTCAAATGCATGACAGTTATTTTACCCTAAATGCATGGATGGCTCTCCATTAAACAACATGTTCATACCTTTGACATCTATTATGTTTAATTCTGGTATTCTGCATTTGTTTGTTATTAAAAACATTATATTTATAGAAACATTTCTTTATATTCACACTGATTACTTTAAAGAATAAAAAATCCCACCTTTGCACCAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02432 FZD1_7, fz; frizzled 1/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145899 lncRNA upstream 2293 26317478 ~ 26320714 (+) True cdk14
TU145905 lncRNA upstream 202828 26119808 ~ 26120179 (+) True G126396
TU145906 lncRNA upstream 204684 26117987 ~ 26118323 (+) True G126397
TU145927 lncRNA upstream 229478 26088232 ~ 26093529 (+) True G126418
TU145884 lncRNA upstream 284777 26037629 ~ 26038230 (+) True G126375
TU146056 lncRNA downstream 6123 26333018 ~ 26333224 (+) True G126543
TU146058 lncRNA downstream 8662 26335557 ~ 26335980 (+) True G126545
TU146061 lncRNA downstream 11173 26338068 ~ 26338357 (+) True G126548
TU146059 lncRNA downstream 12667 26339562 ~ 26339896 (+) True G126546
TU146062 lncRNA downstream 13022 26339917 ~ 26340149 (+) True G126549
XM_021626100.2 mRNA upstream 2293 26123713 ~ 26320714 (+) False cdk14
XM_021626109.2 mRNA upstream 2293 26123713 ~ 26320714 (+) False cdk14
XM_021626106.2 mRNA upstream 2293 26159548 ~ 26320714 (+) False cdk14
XM_021626094.2 mRNA upstream 209054 26099143 ~ 26113953 (+) True LOC110539113
XM_036943565.1 mRNA upstream 348130 25831403 ~ 25974877 (+) True tsnare1
XM_021626136.2 mRNA downstream 125786 26452681 ~ 26547503 (+) True LOC110539173
XM_021626143.2 mRNA downstream 252863 26579758 ~ 26581796 (+) True LOC110539182
XM_021626146.2 mRNA downstream 254873 26581768 ~ 26585441 (+) True LOC110539212
XM_036943660.1 mRNA downstream 269370 26596265 ~ 26613437 (+) True LOC110539196
trnar-acg-2 mRNA downstream 314272 26641167 ~ 26641239 (+) True trnar-acg-2
TU145896 other upstream 272903 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 565154 25682880 ~ 25757853 (+) True G125934
TU144043 other upstream 940695 25377484 ~ 25382312 (+) True LOC110534557
TU143765 other upstream 1449173 24873051 ~ 24873834 (+) True G124451
TU143400 other upstream 1779396 24541004 ~ 24543611 (+) True LOC110538915
TU146263 other downstream 299954 26626849 ~ 26628649 (+) True G126727
TU146777 other downstream 467315 26794210 ~ 26795762 (+) True G127190
TU146788 other downstream 530803 26857698 ~ 26861242 (+) False G127198
TU147247 other downstream 821281 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 863096 27189991 ~ 27190593 (+) True G127644

Expression Profile