RNA id: XM_036943662.1


Basic Information

Item Value
RNA id XM_036943662.1
length 4036
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110539285
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26641958 ~ 26675649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCTCCCTAATCCCACGGTCGACTCCACACTATCCACATTCGGAGCAAGACGTTTGCTTTAGTTCAGTATATTTTGCCGTACGCACTTGTAATAACTGTTCAATTATAGGCGAGCTAAATTAGCGTTGTGATAGGACCCCACTGGAATTTGTTTAGCAACTCGCGGGAAAAGTTTGGAACGCATGCACTCGCTACAAAGTTGCAAACAACGTTTTTTTAATGGATGCTTCGGCTGTGAAGTTCGGAAAGGGGGCGCAGGCTGGGGTCGTAGGCTATCTGATCTGACTTTATAAACAGACAGTATCCTGTTGCGAGCAGAGTCAGCTGGCTCACGGAGGAGAGAACGGAGCTTCTTCTCGCTATTATTCGGATCTTTGTCCATTCCGGAGTAGGCCTAGGCATAATTGCTTCCGCAGGATAGCTAACACATTACGGGAGAAACTAATTCAACTTCAGGTCGGGATCTTCACGTCAGAATACCGCTTGACAGTGCTCTCTCTCCGCTGCCTGGACTGGACAGAAGCTTGGTAATCTTTTACTTCGAGAGTGACGAGGGTTTGGATTTAATCCTTTCGTTTCAATTGTTTACTGTGATTAACATTGTTTTTATTGGCTAgcctactttttattttattttggacaGAACTTTTTTTGTGACAGTTGTGGCTCGAATCTTAAATCAGATCATAGTTTATACACATTTTGTAATTCACTTCAAGATGGATAAATACGACGATTTGGATCTTGAGGCAAGTAAATTTTTAGAAGACCTCAATATGTATGAGGCATCTAGGGACGGGTTGTTCCGAATGAAGAGGGATGCAGGGAACAACTCCGACTTTGAAGAAACCAGGAGGGTTTTTGCCTCCAAAATGACAAAAATCCACATACAGAAACAGCAAGAGGAAATAGCCAAAAACAATTTGGCAGTGAGAATGAACGGGGGTCAAAACAGAGCGGCAGACAGCACGTTTTACACCAAAGACAGGCCGCCTATCAATAGCTACAGACAGGCAGGAGAAGCTGCGGCCAAGCCTCCCATACTCTCTGGCCCTTTGCCAGGCACCGCCAGTGGCGCGAGTCAGTACGCTCCCTATGACGCTCTGAAACACCATTCACCCAGTCAACAGCCATACAGCTACGGAAACAATTACGATAACAAGGACCGTTTTGAGCCGCATTCTTACCACCACGCCTTGAGTCCCACCAGCCCAGGGAATGCACCCACACATGCTTCTGGTCACCCTGCCAGTCCCTCTGTCACTTGGGCCTCTTACTCTTCCAGCCCTGGTGGATCATCAGGGCTTATGTGCAGCCCACCTCAGCAGCCCCCACACcactcaccatctccctccttctccgaCAGCCTACCATCTCCGAGCCCCACTAGACTGCACCAGAGCAAGGCTGCCACTCTACTAGTGCGGCAGAGACCCCCCATGGTGGCTGGGGCTGCAGCAGACTGGATGCGGAGCTTGGGGAACCCAGAGCTGATTGCACCGCTCCCTCTGAGTGCCTTCACTGGCGGAGCTGACCTGTACCAGCATCTGTCTCCACAACCTGCCCCTGTTACACCGCCAACAGGCCCTTACTCAGCAGCACCCTGCATGGCCCCAAGACCAACCGCCAACCAGGGAAATCTACGCCAGAACGGGCTCTCTCAGAGTCCTGTGGTTCTCACCCCCAGCCCCACCCCTGCTCAAGGGGCTGTCCCAACCCCACCTGTACACCCATCTGAGACAGCCCAGCCCAAAGTCACTACTGGAGCTTACttccctgcctctgcctctccctctggaACCAGTGTCTCTAGAAGCTTTGGCCAGGGTCAAGGTATAGGCCAGGCCCAGGGCAGGCAAGTGGCCATGGGGGTGGATGTGCCCTCTGGCCTAGACAGCCAGCTGTCCTCTGGTGGTGAGGCTTGCCAGCTCCAACACCAGCCCCAGTCTCTCAAACTGCCCTGCCAGACTCTCCATGTCCAGCCAGAGCAGGGGCCGTCTGCCGCCGAGATCAAATTAGAAGCCCTGACCAAGCGTCTGGAGAAGGAGATGGACGCCCAGCCAAAGGCAGACTACTTCGggagCTGTGTGAAGTGTAACAAGGCGGTGTACGGAGCCACTGCTGCCTGCCAGGCTATGGGAAGCCTCTATCATGATGTCTGCTTCACCTGCAGCGCCTGCAGCAGAAGGCTACGGGGGAAAGCATTTTACTACGTCGGTGGGAAGGTGTTCTGTGAAGAGGACTTTCTGTATTCTGGATTCCAGCAGTCTGCAGACAAATGTAACGCATGCGGACATCTGATCATGGATAtgATCCTGCAGGCCCTTGGGAAGTCTTACCACCCTGGCTGTTTCCGTTGTGTCATCTGTAACGACAGTCTGGACGGAGTGCCCTTCACTGTGGACACAGAGAACAAGATTTACTGTGTCAAAGACTATCACAGGGTCTTGGCCCCCAAATGTGCAGCATGTAACCAGCCCATTCTGCCTTCAGAGGGCTCTGATGAAACCATCCGAGTGGTATCCATGGATAAAGACTACCACGTGGAGTGCTATCACTGTGAAGACTGTCAGATGGAGCTGAACGACGAGGAGGGGCACCGCTGTTACCCGCTGGACGGGCACCTCCTCTGCCACACCTGCCACCTGAAGCACATCGAGCCGGGCTGCGCCTCACCCACCGCTGCCTCCTACCAGCACCAGTTCTAGTTTTAGGATCTAGTGCATGGTGCCACCAGGTGGCCCTCTGAACTAACTGCCAATAACCAACCACAACCAATCTGCCCAAAAAAATGTCTATAATGGTTTGAATGATAATGTATGCCTTTACTGTACATCTCTGATGTAAGTGTGGTCCCTTTAGGGTTAATTGTgcgattggttgattgattgattgattgattgcgtGTGTGCAAGTGTGGGAGTGTGCTTGTAAATGAGATAGAcctgttattatttttttaatgaaaaaatCTATTTCTCTATCGAAGACATGGTTTATTAGTTGTAAAGTGTTGAACTTTCATCTGACACGAATGTTAATACTCtggaaatatttttttaatatatgtatatttaaaTACCAATGCCAAAGCACAGTTGTATTTTAATGACTGATACCAAAACAATTAAGCATGGAATTATAACAATACAATTTATAGTCTCAATTAGGTGCATTGTGTGTAAATAAATATGCATTTCATGTGCTTGTGTAAATATCCTGATCTTCATTTTCCCCTTTGTGTGCCACCAATTTCAGTTGCTCAGTTTGAATCAATGTGTTTGTAGATACTGATACAGTAGAAATAGTTTGCATAGCTGAATAGAGCAATTGCCCAGTTTTgtagtatgtctctgtgtgtgggttaTGAAGGTGCGTTTCCATGAATTTTTTTACTAGAAATACCTTCATTACTCATTTTAGCTAATATGCAGGTATTGTCTAGAAAGTCAAAGTTAGCAATTCAATACACAAACTGTACATGGTCCTTTTATTGTTCCATGTCAGTGGGAATCATGTTGAATTAGTATTACATTTCTATTGTTAAATGAACCCTGGATGTTCTGTTCCCAACACTGATACTGGGCtaatattcccactgtcctctgTCACACACCACTCATAGAATATACTTTCTATTGCATTATTAACCCAAATATAGCAGTTATGTTATGTCTGGGTCAACAATGTTTCCAAAATCCCTGCACACAATTACCACCCAAGAAAATAAATAACTAGGTTTATTCTATTCCAATAAACCCCCAAATTCAATATCTATGAACAACCCCTGATAACCCATTTTGGTTTGTAGTGACAAAAAAAGTGACTAAAAGATTAAGTTTCAGTAGGCTTAGTCTATCATATTTCATGATTTATTATATTTATCCTTGTTTGGAAAAAATCCCATGGTCATTAATCATATGTTCAAAGTATGTGACGTATGTGAAGTATTCCAGTCGTTTACTGTATTTGAAAATGATTTGAGAGATGTCCATATCTAATATTTAACTAAAATAAATGCATTGTAATAGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146636 lncRNA downstream 13355 26626693 ~ 26628603 (-) False G127074
TU146638 lncRNA downstream 13355 26626830 ~ 26628603 (-) False G127074
TU146637 lncRNA downstream 13355 26626946 ~ 26628603 (-) True G127074
TU146647 lncRNA downstream 15339 26626166 ~ 26626619 (-) True G127080
TU146652 lncRNA downstream 77626 26564092 ~ 26564332 (-) True G127085
TU146714 lncRNA upstream 8519 26684168 ~ 26684638 (-) True G127131
TU146866 lncRNA upstream 61192 26736841 ~ 26737779 (-) True G127268
TU146922 lncRNA upstream 145117 26820766 ~ 26822599 (-) True G127307
TU146928 lncRNA upstream 157523 26833172 ~ 26854454 (-) True G127313
TU146961 lncRNA upstream 202801 26878450 ~ 26914822 (-) True G127342
XM_021626149.2 mRNA downstream 962 26629576 ~ 26640996 (-) True LOC110539269
XM_021626147.2 mRNA downstream 53313 26585791 ~ 26588645 (-) True ggctb
XR_005036029.1 mRNA downstream 62621 26576953 ~ 26579337 (-) True LOC118938772
XM_036943657.1 mRNA downstream 62748 26576953 ~ 26579210 (-) False LOC118938772
XR_005036025.1 mRNA downstream 82824 26550832 ~ 26559134 (-) True LOC110539162
XM_036943665.1 mRNA upstream 7709 26683358 ~ 26726160 (-) True lars2
XM_021556152.2 mRNA upstream 84736 26760385 ~ 26762634 (-) True LOC110485094
XM_021556158.2 mRNA upstream 106147 26781796 ~ 26786966 (-) False LOC110485095
XM_021556163.2 mRNA upstream 106147 26781796 ~ 26786970 (-) False LOC110485095
XM_021556160.2 mRNA upstream 106147 26781796 ~ 26786984 (-) True LOC110485095
TU146650 other downstream 79831 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 1865331 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2107429 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2317122 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 2371822 24269226 ~ 24270136 (-) True G125003
TU147564 other upstream 595611 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 1090508 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 1421033 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1634670 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1801537 28477186 ~ 28477831 (-) True LOC110534614

Expression Profile