RNA id: TU146641


Basic Information

Item Value
RNA id TU146641
length 1640
lncRNA type sense_over
GC content 0.40
exon number 3
gene id LOC110539285
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26641958 ~ 26675649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtaaaggaggagagaatggGCAAAGGAGGAGAGAATGGGCAAAGGAGGAGAGAATGGGCAAAGGAGGAGAGAATGGGCAATGGGGGAACTGGTGAAAGAGAGGAAGTGTTAGAAGTATTAACCTTAAAAAAGAGTAACAGATACTTGTGCTGTATCTATATCAAGCCTGGTGGTCTTTCTGTAGGGAACCAGTATAAACCAGACATATATTTTCAGTCTGAAACTGTTATTATTTCTACCAATTGATGTATCTTCTTTGTTCTCTCGTTTTCTCAGGGTCTTGGCCCCCAAATGTGCAGCATGTAACCAGCCCATTCTGCCTTCAGAGGGCTCTGATGAAACCATCCGAGTGGTATCCATGGATAAAGACTACCACGTGGAGTGCTATCACTGTGAAGACTGTCAGATGGAGCTGAACGACGAGGAGGGGCACCGCTGTTACCCGCTGGACGGGCACCTCCTCTGCCACACCTGCCACCTGAAGCACATCGAGCCGGGCTGCGCCTCACCCACCGCTGCCTCCTACCAGCACCAGTTCTAGTTTTAGGATCTAGTGCATGGTGCCACCAGGTGGCCCTCTGAACTAACTGCCAATAACCAACCACAACCAATCTGCCCAAAAAAATGTCTATAATGGTTTGAATGATAATGTATGCCTTTACTGTACATCTCTGATGTAAGTGTGGTCCCTTTAGGGTTAATTGTgcgattggttgattgattgattgattgattgcgtGTGTGCAAGTGTGGGAGTGTGCTTGTAAATGAGATAGAcctgttattatttttttaatgaaaaaatCTATTTCTCTATCGAAGACATGGTTTATTAGTTGTAAAGTGTTGAACTTTCATCTGACACGAATGTTAATACTCtggaaatatttttttaatatatgtatatttaaaTACCAATGCCAAAGCACAGTTGTATTTTAATGACTGATACCAAAACAATTAAGCATGGAATTATAACAATACAATTTATAGTCTCAATTAGGTGCATTGTGTGTAAATAAATATGCATTTCATGTGCTTGTGTAAATATCCTGATCTTCATTTTCCCCTTTGTGTGCCACCAATTTCAGTTGCTCAGTTTGAATCAATGTGTTTGTAGATACTGATACAGTAGAAATAGTTTGCATAGCTGAATAGAGCAATTGCCCAGTTTTgtagtatgtctctgtgtgtgggttaTGAAGGTGCGTTTCCATGAATTTTTTTACTAGAAATACCTTCATTACTCATTTTAGCTAATATGCAGGTATTGTCTAGAAAGTCAAAGTTAGCAATTCAATACACAAACTGTACATGGTCCTTTTATTGTTCCATGTCAGTGGGAATCATGTTGAATTAGTATTACATTTCTATTGTTAAATGAACCCTGGATGTTCTGTTCCCAACACTGATACTGGGCtaatattcccactgtcctctgTCACACACCACTCATAGAATATACTTTCTATTGCATTATTAACCCAAATATAGCAGTTATGTTATGTCTGGGTCAACAATGTTTCCAAAATCCCTGCACACAATTACCACCCAAGAAAATAAATAACTAGGTTTATTCTATTCCAATAAACCCCCAAATTCAATATCTATGAACAACCCCTGATAACCCATTTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146636 lncRNA downstream 13585 26626693 ~ 26628603 (-) False G127074
TU146638 lncRNA downstream 13585 26626830 ~ 26628603 (-) False G127074
TU146637 lncRNA downstream 13585 26626946 ~ 26628603 (-) True G127074
TU146647 lncRNA downstream 15569 26626166 ~ 26626619 (-) True G127080
TU146652 lncRNA downstream 77856 26564092 ~ 26564332 (-) True G127085
TU146714 lncRNA upstream 35261 26684168 ~ 26684638 (-) True G127131
TU146866 lncRNA upstream 87934 26736841 ~ 26737779 (-) True G127268
TU146922 lncRNA upstream 171859 26820766 ~ 26822599 (-) True G127307
TU146928 lncRNA upstream 184265 26833172 ~ 26854454 (-) True G127313
TU146961 lncRNA upstream 229543 26878450 ~ 26914822 (-) True G127342
XM_021626149.2 mRNA downstream 1192 26629576 ~ 26640996 (-) True LOC110539269
XM_021626147.2 mRNA downstream 53543 26585791 ~ 26588645 (-) True ggctb
XR_005036029.1 mRNA downstream 62851 26576953 ~ 26579337 (-) True LOC118938772
XM_036943657.1 mRNA downstream 62978 26576953 ~ 26579210 (-) False LOC118938772
XR_005036025.1 mRNA downstream 83054 26550832 ~ 26559134 (-) True LOC110539162
XM_036943665.1 mRNA upstream 34451 26683358 ~ 26726160 (-) True lars2
XM_021556152.2 mRNA upstream 111478 26760385 ~ 26762634 (-) True LOC110485094
XM_021556158.2 mRNA upstream 132889 26781796 ~ 26786966 (-) False LOC110485095
XM_021556163.2 mRNA upstream 132889 26781796 ~ 26786970 (-) False LOC110485095
XM_021556160.2 mRNA upstream 132889 26781796 ~ 26786984 (-) True LOC110485095
TU146650 other downstream 80061 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 1865561 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2107659 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2317352 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 2372052 24269226 ~ 24270136 (-) True G125003
TU146643 other upstream 2469 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 622353 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 1117250 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 1447775 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1661412 28310319 ~ 28310732 (-) False G129582

Expression Profile