RNA id: XM_036943668.1


Basic Information

Item Value
RNA id XM_036943668.1
length 2820
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110485091
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26738924 ~ 26741780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTACCAGGGTCCTCGCAGCACACCACAGCCTATCTCTTTCATGCAAAGTAACGCCCAGTAGCAGTTTGGCAAGACGCCAGTTACTTTGGGAACCAAATCTAGGGCGGGGAGCGCGCACGGCGCGTGTGACGGGCAGCTGACGTTTCCAACTGTCCTCTCCCGCAACGGTAGATGCACACTGTGGATGTTTGTATAAGCGCTGGAGACGGCCGTTTTCGGCATTTTATTAACGACGGCCACGCATCGTCAGTTGCCTTGCATCCCCACGGAACATCATGCGAGTAGGAGCGACGCACCCAATGCCATGCTGAGCAACTCCCCGACTTTTCTGCTGGCTCTGACCACGGTAGCCGGACTACTCCAGCGGTGCCACGGCTGGAGCGACGAGGACCTCCTGTTACCCCCCATCAACTCCACCAACAGATTCTTGGCCAACTTGGAGGTGGACGTGCACTACTCGAAGAGATCCATGGAGGAGAGCGAAGCCTCCTCGTCAGACACTTCGTTACAGCCGTTGCCACATTGCAACGTCAGCGTGCAGAGACTTTTCCCCACCTCGCTGATGGCTCGTTGGGACAGCAACTTCGGTTTCCAGTGCGATGTGTTTATATATACCGCCAATAACAATGGAAGGGCTTTTTTCTCTGCTGCTATCAACAGAGCCATCTCACCTGTTCTCATCGAACACCTCGGAGTCACCGGCGGCCAGCAGGAGTTTAGACTGTGTGTTGGATGTGGCATGTCACGATACCGGCGATTCGGCAAGTCAAAGGCTCAGCAGACGGGGGATCCCATCAATTTCTGCTGTGTTGACTTCAGCCTTGACGAACTAAATGGGGACAAAAGTTGGAGATTGAACCGTAAACCCATCGAGTCAACTCTTGTGGCTTGTTTCATGACTCTAGTGATAATAGTGTGGAGTGTTGCTGCCCTCATATGGCCGGTGCCTATTATTGCAGGATTTCTGCCCAACGGAATGGAACAGAGACGGCCGAGATAAAGAATGATCAAATTCTGGAGATAAGCCCCCAAGCCAATAGGCTAAAAATACTGTAGAATACATATTTCAACGGTTTTTTTCACATTCTACCCGTATAAAAGAATGTCCGTTTCCAATTTTACCGTTTAGAATGAAAGAGTGTATTTTTGGTTTTGGTCTATTTCCTATTGATAGGCCTTCACTATAAGAAGACCAAAAGTTTTAAAGATAGGTTGTGGTATTGTAAATCTAGCCTCTGTATTACATTGTCTATAATAGGTGCATATGTAGAGTGTGTTAACATTTCACTGTAAACGGTGTTTGTATGGTTTTAAATCTTTGTAGGATTATTGCCTATGGCCCtggcagtggtgtagtggtgcccgAATAAGTGGGTATACTCTAATTTTGCCAAAAATGTCCCAAACGGTCCAGCCCGGCAAAGGAAAGATGCCCTGTGTGAAATATTATATGAGAAACAGTGACATACATTCTGTATTACCTAAAATTATATATTccatattggtctttcacagtcagaccaacccaagctgtactgtgcaagTAGGCTAATTGTAGACACACTATTGAAACAGATAAATTAGGCTGTCAACTGAGTCAGAAATTCAAAGGTTTCATATCTATTTATTTATATTCAGATGTTCACTCTCAAAGTCACAATTTGTTTTATAGAAAAACAACTAAattggatgttctatgtccatAACAATGCTTTCAAAGTCCATAACAATGTCCATAACAataccacatcaggagaccacttttgagctCTGGAAAATATCGAAGATAAACTATTTTTGTGTAGTTGCACTTTAATAATTCCAGTGTGAtggcacctagcactgttgtttgttAGTGGTATTTCTGTAGCACGTGAGATGgaatttgcaaaacaaatggccactggattaaTGCAAATAATCATCATATCATTCTGCCATtttttgggaaagcctttccatctaccagaagacggCTTATTGTTAGCATCACTATATTTTTCCTgttacttaattgtttgaaacctagATGTTTTACTCCGTATTATGAGGCATGCCTTAGCATTTCTTCAATGGAGCCAATAGTCAAAATCCCACCATAGAAAGGAGGAGGCAATTATTTGATAAAGACTTCCTCGTATGCATTATCCTGTTCTTTCAACTTTATTTCATTGTCTAGCAGCCAAATGCATTATCCTATTCATATTAGCAACTGATGAAGGTTGTTGTATCTTTAGATCTCCCATAGTATCTACATTTCGTATGGATATTTCAATCTCCATCCATGAAACCTCTCACAAATGcggtgcacattttagaatggtaTTTTCCTGCTAATTTCATTTTGGAACATTCCCGTGTAGGCCTACCGCCATGTGCCCATTGCTGCatctaaaatgtgaagaaataatagtttatcaacatttaatTTAAGCATGAAGAAATACACGCAATGCCCACTGAAAACCTGTGCATACCCTCTGCTACACACACCACTGAAGCCTGCTATTTGTTGTGTTTATGTAGAGAGAAATTATAGTTTTCTCATGAACTTGAATGAAAAAGTGTGCTGTAATACGTGGTGGGTAGATCTTGTCAAGAATAAATGCATAAATGTCATAGGCCTACCTGAATTTATTTTGGATGTTGTATCAAATATTTTGACGTATAGGCAACCCCTCTCTGATATTGTTTAATATTATTTATGTTAGCTTTATCTATATAACACAATTAAATCTAAGCTGATaacatatttgtatttgtttgtatGAGATAACATgagtgaataaataaataaaatgtatttgttttaccAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146286 lncRNA upstream 77557 26660012 ~ 26661367 (+) True G126748
TU146224 lncRNA upstream 175582 26563047 ~ 26563342 (+) True G126695
TU146223 lncRNA upstream 176916 26561498 ~ 26562008 (+) True G126694
TU146190 lncRNA upstream 180288 26558016 ~ 26558636 (+) True G126664
TU146206 lncRNA upstream 211888 26525778 ~ 26527036 (+) True G126679
TU146749 lncRNA downstream 18662 26760442 ~ 26761528 (+) True G127165
TU146774 lncRNA downstream 50248 26792028 ~ 26792291 (+) True G127188
TU146795 lncRNA downstream 83532 26825312 ~ 26825904 (+) True G127202
TU146802 lncRNA downstream 86468 26828248 ~ 26828451 (+) True G127209
TU146804 lncRNA downstream 88415 26830195 ~ 26830696 (+) True G127211
trnar-acg-2 mRNA upstream 97685 26641167 ~ 26641239 (+) True trnar-acg-2
XM_036943660.1 mRNA upstream 125487 26596265 ~ 26613437 (+) True LOC110539196
XM_021626146.2 mRNA upstream 153483 26581768 ~ 26585441 (+) True LOC110539212
XM_021626143.2 mRNA upstream 157128 26579758 ~ 26581796 (+) True LOC110539182
XM_021626136.2 mRNA upstream 191421 26452681 ~ 26547503 (+) True LOC110539173
XM_021556142.2 mRNA downstream 5191 26746971 ~ 26765817 (+) True LOC110485092
NM_001160642.2 mRNA downstream 28684 26770464 ~ 26779479 (+) True rwdd1
XM_021556171.2 mRNA downstream 71704 26813484 ~ 26823336 (+) True LOC110485096
XM_021556215.2 mRNA downstream 156149 26897929 ~ 26903411 (+) False LOC110485145
XM_021556222.2 mRNA downstream 158109 26899889 ~ 26903411 (+) True LOC110485145
TU146263 other upstream 110275 26626849 ~ 26628649 (+) True G126727
TU145896 other upstream 688820 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 981071 25682880 ~ 25757853 (+) True G125934
TU144043 other upstream 1356612 25377484 ~ 25382312 (+) True LOC110534557
TU143765 other upstream 1865090 24873051 ~ 24873834 (+) True G124451
TU146777 other downstream 52430 26794210 ~ 26795762 (+) True G127190
TU146788 other downstream 115918 26857698 ~ 26861242 (+) False G127198
TU147247 other downstream 406396 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 448211 27189991 ~ 27190593 (+) True G127644
TU147350 other downstream 560298 27302078 ~ 27303555 (+) True LOC110485466

Expression Profile