RNA id: XM_021556152.2


Basic Information

Item Value
RNA id XM_021556152.2
length 1481
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110485094
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26760385 ~ 26762634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAGAGCATGTGGAACAGGAAAAACACTTGCTAGCAGCTACTCAGCTAGTTAACTACAAAATGTTGCCTAACATAAAATCATTGAGGATGTTGCTTAACATGCGATTAAAAGAGGCTGTCGATGAGCTATTCCGGGCAGTTGAAACAACGATAGCAGAGTACCAGCAAGAATTTTGCCGTTCAAAAGAGGAGAAAGACCGAACGATAGCAGAGTACAAGGAAAAAGTGTCCCGTTCGGAAGAAGAGAATGCCCGGCTACAGAGGCTGCTGGATGTTGTTCTTAAACCAGAAATAAGGTTACAGAGACTTGAAGACCTCCAGcagctcactctctccatctctgaagAGGAGGTTCCCCTTGAGCAGCAGCACTGCAAGCAGGATTGTAGTCCCGGTCTGGGGCAGGAGGACCCTTCCCAGATTAAAGTGGAACAGGAGGACCTATGGGTCATCAGTCAGGGACGAGAGCAGCTTCAAGCAATGGATTATGATACTGATGATACGGATGATTCTGCTGATACAGAAGCCTTCATATCTACTGCCAGAGTAAAATGTGACTATAATCAGAACCCAAATCAGTCCTCACATTTTTACCAAATTTTAACCCAACGTGAAGAAAACACAGAGAGGGATGAGCTACCCAGCACCACAACGCAAATTGAAGAGATTAAAACGGAGTTCTTCAGTGACTCTCAGCCCGCCTCTGCAGTCAATTCAGACTGGTCTGAAACTCAGAGTGAGAGCGGTGAAAGTGTTGATCGGATGGAGAGTGAAGGACCTCCACTCAAGTCAAAGAGAACACAGACTAAAGCTGGACCAAGCTTCCATGTCTGTTGTCACATCTGAAATCCCCTATCTCCAGTAATGCTGTTCGTCATTGTAGAATATGTGCAAAACCTTATCACTAGTGATCTAGTGATTCATGCCCATAGACATGCACAGCTATCTCGGTGTGGTATCTGCGGAAGAACCTTTGAGTCTGTAGAAAGTTTTAAAGAACAACTACATTTTCATGTTGCAAGTACAGGATCACTTTCTTGTTACATCTGTGGTATTTCACAGAGGATGAGGAGGTTTTGCTGGAAGAGCAATCACAAACTGAAACTGGATCGCTGTCTTGTGTAAGAAACGTTTTGAAACTCGCCAGGGTCTGACATTGCATATCAGGACTCTTGAAGACTGCCCCGACCTGGGCCTATGACCCGCAGCCTGAGCCTGTCCTGCCTTTTCTAAGcagactttttttattttttaagttgTAAAAACAATGTGAACGTGAGGGAGGCGTAGCGCTATATTGTCGTAATCAAACTTGATTAGAACTCTACCGCAGTTTTTGCTGAAGAAATGACTGATAAAATGCTCCAGTTCCATATCCTAGTAAAGGAGGCCTGAGTGAGGCCCATGCGCGTCTGCTGAAGGTCTGTGTATActgaaatgcatttttttttttaaatatcaaatAAACTATTGAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146866 lncRNA downstream 22606 26736841 ~ 26737779 (-) True G127268
TU146714 lncRNA downstream 75747 26684168 ~ 26684638 (-) True G127131
TU146641 lncRNA downstream 111478 26642188 ~ 26648907 (-) False LOC110539285
TU146636 lncRNA downstream 131782 26626693 ~ 26628603 (-) False G127074
TU146638 lncRNA downstream 131782 26626830 ~ 26628603 (-) False G127074
TU146922 lncRNA upstream 58132 26820766 ~ 26822599 (-) True G127307
TU146928 lncRNA upstream 70538 26833172 ~ 26854454 (-) True G127313
TU146961 lncRNA upstream 115816 26878450 ~ 26914822 (-) True G127342
TU146941 lncRNA upstream 139389 26902023 ~ 26903399 (-) True G127323
TU146992 lncRNA upstream 172838 26935472 ~ 26935844 (-) True G127372
XM_036943665.1 mRNA downstream 34225 26683358 ~ 26726160 (-) True lars2
XM_036943662.1 mRNA downstream 84736 26641958 ~ 26675649 (-) False LOC110539285
XM_021626149.2 mRNA downstream 119389 26629576 ~ 26640996 (-) True LOC110539269
XM_021626147.2 mRNA downstream 171740 26585791 ~ 26588645 (-) True ggctb
XR_005036029.1 mRNA downstream 181048 26576953 ~ 26579337 (-) True LOC118938772
XM_021556158.2 mRNA upstream 19162 26781796 ~ 26786966 (-) False LOC110485095
XM_021556163.2 mRNA upstream 19162 26781796 ~ 26786970 (-) False LOC110485095
XM_021556160.2 mRNA upstream 19162 26781796 ~ 26786984 (-) True LOC110485095
XM_036943696.1 mRNA upstream 31515 26794149 ~ 26813463 (-) False LOC110534567
XM_036943698.1 mRNA upstream 31515 26794149 ~ 26814653 (-) False LOC110534567
TU146643 other downstream 97371 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 198258 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 1983758 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2225856 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2435549 24324580 ~ 24324836 (-) True G125043
TU147564 other upstream 508626 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 1003523 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 1334048 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1547685 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1714552 28477186 ~ 28477831 (-) True LOC110534614

Expression Profile