RNA id: XM_021556163.2


Basic Information

Item Value
RNA id XM_021556163.2
length 1363
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110485095
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26781796 ~ 26786984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTCCTCGAGCACGACACGAATAAAAAACCCAGCTGAAACGTGTGTTTGTCTTCCGCGTCTTCTATTTGGGACAGTAGGTGATATTCGGGTAGGCATTGGACACCGAGTGAATGTAACTTCGCTCTGCCCGCTATCCATCATAAAACCTTATTTTTAAGAATAGTTGTTAATTGACTGCAAAAAACTACCTGGGGCCAGGGATTTCATAGTAGCCAACACCGACTGTGGATTTTGTCACATTGGCATACAATGACAACTTCCATCCGTACAAAGACAGATCCTTTGGATTCCACTGATCCCCAGGTTCTGGACTATATGCTGGTTCCTCACCGGAACTTCAACCTGATCAATGGGGTCCACTCTCCCGACGAGGTCGACCAAATCCAGAACTGGGAGATCCGAGACTCCGACATATTCGCCGTCACTTATCCCAAGTCAGGGACGATCTGGATGCAGCAGATTCTGACTCTGATAGAAGCCAAAGGGGACGTCACTCCAAACACAGAGCATCTCAACGCGCAGCGCGTCCCATGGATCGAGCTGATTGGCAGTGAGAAGGAGTTTAACGCTACCCCTTCCCCCAGGCTACGGGTCACCCACCTGCAGTACAAGTTCATGCCTCTCGCCATCAGACAAAAGAGGGGAAAGGTGATCTATGTGGCCAGAAACCCTAAGGATGTTCTCGTGTCCTATTACCACTTCCACAAATATGCAGCCATGCTGGAGACACCGAAGGACTTCAATGATTTCTTTGAGAAATTCATGGAAGGGAAAGTTTTTGGGAACTGTTGGTTTGAGCACATCAAGACGTGGTACGCTAATAGAGACAACATGAACTTCCTGTACATCACATATGAAGAGATGATCAAGgaccTGCGCTCCATGGTGGAGAGGATGTGCAGGTTTCTAGGGAAGGATTTGACAGAGGAGCAGATGGCCAGTGTGGTGGAACACAGCACCTTTAGAACCATGAAACAGAACCCGCAGGCTAACTACAAGACGGTGCCCGACTCCCTGCTTGACCACAACAAGGGCACGTTTATGAGGAAAGGGCAATTctgccacttttcaacctcatattcatgaTCTCTGGAATCATACCtgtgtctacatatgtgaaaataGGACCATTGGGGACTGGAAGAACCATTTCACTGTTGCACAGAGCGAGAGATTTGACAGTGTCTTCCAGGAGAAGATGAAGGACCTGCCCCTCTCTTTTGCTTGGGACATCAATGACATCACTAGTGTCACGTGATGACATCCTAGTCACGTCTTGCAGGGATGTTTTTAATCCTTGGGCGGGCCCCCTAAGCATTTTTTCAGGTCACCTAAGTCCAAATAGTGTAAaaagaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146866 lncRNA downstream 44017 26736841 ~ 26737779 (-) True G127268
TU146714 lncRNA downstream 97158 26684168 ~ 26684638 (-) True G127131
TU146641 lncRNA downstream 132889 26642188 ~ 26648907 (-) False LOC110539285
TU146638 lncRNA downstream 153193 26626830 ~ 26628603 (-) False G127074
TU146922 lncRNA upstream 33796 26820766 ~ 26822599 (-) True G127307
TU146928 lncRNA upstream 46202 26833172 ~ 26854454 (-) True G127313
TU146961 lncRNA upstream 91480 26878450 ~ 26914822 (-) True G127342
TU146941 lncRNA upstream 115053 26902023 ~ 26903399 (-) True G127323
TU146992 lncRNA upstream 148502 26935472 ~ 26935844 (-) True G127372
XM_021556152.2 mRNA downstream 19162 26760385 ~ 26762634 (-) True LOC110485094
XM_036943665.1 mRNA downstream 55636 26683358 ~ 26726160 (-) True lars2
XM_036943662.1 mRNA downstream 106147 26641958 ~ 26675649 (-) False LOC110539285
XM_021626149.2 mRNA downstream 140800 26629576 ~ 26640996 (-) True LOC110539269
XM_021626147.2 mRNA downstream 193151 26585791 ~ 26588645 (-) True ggctb
XM_036943696.1 mRNA upstream 7179 26794149 ~ 26813463 (-) False LOC110534567
XM_036943698.1 mRNA upstream 7179 26794149 ~ 26814653 (-) False LOC110534567
XM_036943690.1 mRNA upstream 7179 26794149 ~ 26814659 (-) True LOC110534567
XM_021556185.2 mRNA upstream 47694 26834664 ~ 26839122 (-) True LOC110485107
XM_021556194.2 mRNA upstream 62773 26849743 ~ 26858369 (-) True LOC110485118
TU146643 other downstream 118782 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 219669 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2005169 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2247267 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2456960 24324580 ~ 24324836 (-) True G125043
TU147564 other upstream 484290 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 979187 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 1309712 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1523349 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1690216 28477186 ~ 28477831 (-) True LOC110534614

Expression Profile