RNA id: XM_021556206.2


Basic Information

Item Value
RNA id XM_021556206.2
length 1967
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110485134
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26858411 ~ 26863425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCGCGACCCTTCCCATCAGGAGGTGAGCCAGTTACCAGAGGTATAAAAACCCTGTGTGTCCCCGGAGACTCCAGTGGGTTCTGAAGACAAGGGCAACATTAAACAAGTACCAAACTTACCAGGCTACGATGACGATCTGGCAACTGCCTTCCATGCTCCTTGTTGTTATATCAAGTgtctctcctcatcctcatcaCTTATTTGAGTATGATGAGCTGAGCCAATATGTTGACAGCCATCAGGAGGAATATGTACAGactctGAGGGACTGGGTTGCTGTAGAGAGCGACTCCAGTGATGTCTTGAGGAGGCCAGACTGCCATCGCATGATGGATATGACGGCTGAGAAACTACAAGCCATGGGAGGGAAGGTGGAACTGGTGGACATCGGCATACAAGAGCTGCCTGATGGCAAGACAGTGGCCTTACCCAAGGTGGTGACAGCCCAGTTTGGCAGTGACCCCAGTAAGCAGACAGTCTGTGTGTACGGACATGTGGATGTCCAGCCCGCTAAGCTAGAGGACGGCTGGGCCACTGAACCCTACAACCTGACCGACATCAACGGACACCTCTACGGCAGAGGGGCGTCTGACAACAAGGCCCCTGTCTTAGCCTGGATACATACAGTGGAGGCCTATCAGGCCCTCAGCATTGACCTGCCAGTCAATGTGAAGTTCATCATCGAGGGAATGGAGGAGACCGGGTCCAATGGCCTGGACGCCATGATCGTGGCGCAGAAAGACACGTTCTTCTCCGATGTCGATTACATCATCATCTCAGACTGTGGTTGGCTGAGCCGACGCCCCGCCCTCACCTACGGGACCAGGGGGAACTGCTACTTCTTTGCTGAGGTAGAGGGCCCAAAACAGGACCTACACTCAGGGGTGTATGGAGGTACAGTTATAGAGCCTATGACAGATCTGATCGGCATATTGGACACACTGATCAGCCCCAGTGGAAAGATCCTCATTCCAGGCATCAGAGAGGCCGTCGCCCCACTCTCAGACGAAGAGTGGAAGATGTACCAGGACATTGAGTTTGACATTGAGAGCTTTAAGTCCAAGATTGGCGTCAGCCAACTCATGTACAGCAACAAGGTAGATCTGCTGGCCCATCGTTGGCGTTACCCTACCGTTACCATCCATGGAATCGAGGGAGCCTTCTCTGGCCCTGGCTCTAAGACGGTCATCCCTGCTAAGGTCATTGCCAAGTTCTCCATCCGACAGGTCCCCAACATGGACCCAGCAGTGGTCAAGAAACAGGTCACAGACTACCTGTACTCTGTGTTTGCCAAGAGAAAGAGCCCCAACAAGCTGAAGGTGACCATGATCATCGGGGCTAAGCCCTGGTTAGCAGACACCAAGCACCCCCTGTACGAGGCAGGGAAAGCAGCCGTGAAGAGAGTGTTTGACGTGGAGCCAGACCTGATCCGTGAAGGGGGAACCATCCCCATCGCCAAGACCTTTGAGGACGTGACCGGGAAGAGCATCATCATGATGCCTATCGGAGGCTTCGACGACGGCCTCCACTCCCAGAACGAGAAGATGAGCAGGTACAACTACATAGAGGGGACCAAGTTGTTCATTGCGTACCTTCATGAAGTGGCCCATCTCAAGAAGGACTGAGAGCACCTCTTTTCATCACCACTGTTAAAAGACAGTTCTATAATGTGTATCTTGTATGTGATCCCATCAGTGGAGTCTGGCTTTGTTTAGCTTTTTTCCTGACGTTAACTTGTAACTTTTCTGGATTCTTTCCCTCTAAGCAAAACATTCCAGAAACCCTGTGAGTTCTTGGCATCTGATATAGCCTCaacactctgcctctctctctctctctctttctgtatctttcttcctccctcactttcctccattctctctcaatgtctctctctctcattttctctctcgtTCACACACAAATATCTACATGAAACAGCAAATAAATCTGGTTTGACGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146928 lncRNA downstream 3957 26833172 ~ 26854454 (-) True G127313
TU146922 lncRNA downstream 35812 26820766 ~ 26822599 (-) True G127307
TU146866 lncRNA downstream 120632 26736841 ~ 26737779 (-) True G127268
TU146714 lncRNA downstream 173773 26684168 ~ 26684638 (-) True G127131
TU146641 lncRNA downstream 209504 26642188 ~ 26648907 (-) False LOC110539285
TU146961 lncRNA upstream 15025 26878450 ~ 26914822 (-) True G127342
TU146941 lncRNA upstream 38598 26902023 ~ 26903399 (-) True G127323
TU146992 lncRNA upstream 72047 26935472 ~ 26935844 (-) True G127372
TU147002 lncRNA upstream 79338 26942763 ~ 26943032 (-) True G127382
TU147011 lncRNA upstream 85123 26948548 ~ 26948780 (-) True G127391
XM_021556194.2 mRNA downstream 42 26849743 ~ 26858369 (-) True LOC110485118
XM_021556185.2 mRNA downstream 19289 26834664 ~ 26839122 (-) True LOC110485107
XM_036943690.1 mRNA downstream 43752 26794149 ~ 26814659 (-) True LOC110534567
XM_036943698.1 mRNA downstream 43758 26794149 ~ 26814653 (-) False LOC110534567
XM_036943696.1 mRNA downstream 44948 26794149 ~ 26813463 (-) False LOC110534567
XM_021556237.2 mRNA upstream 47973 26911398 ~ 26917136 (-) False LOC110485162
XM_021556245.2 mRNA upstream 47973 26911398 ~ 26917150 (-) False LOC110485162
XM_021556230.2 mRNA upstream 47975 26911400 ~ 26917136 (-) True LOC110485162
XM_021556296.2 mRNA upstream 321085 27184510 ~ 27202253 (-) False LOC110485234
XM_021556532.2 mRNA upstream 339765 27203190 ~ 27215402 (-) False LOC110485460
TU146643 other downstream 195397 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 296284 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2081784 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2323882 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2533575 24324580 ~ 24324836 (-) True G125043
TU147564 other upstream 407835 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 902732 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 1233257 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1446894 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1613761 28477186 ~ 28477831 (-) True LOC110534614

Expression Profile