RNA id: XM_036943786.1


Basic Information

Item Value
RNA id XM_036943786.1
length 1835
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110485187
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26917395 ~ 26934478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaacaaaaacatacacATCTTAATTTTGCTTTGACAAAATACATGCATTTAATGCACAATCATTGCTGTTAAAGTGGTATTTATTTTGAAACAGACAGGAACCACTATTCGCGGGGACGCAGTTTTAAGCCGGGTGTATTTTGCGTAAGAACTCGAACATGGCGATCCACTGTAGCAGAATATGCCTGCAATATTTGATACATCTGGCCCACGACAATGTTGACTTCAGGCTACCGGAGATTAGGTCGCTGCTGTCCCTCAGGGGCAAACCGTTTGATCCAGGTGAAAACTTTAAAGAAAAGTCTCCATTCTGGCTCCTGAATGGCTTGTCAGAGGAAGATGTCAACAGCATCATGGCCAGAACTGTTTGTGCAAAGTCTGCATTTGAGCTGTGGGGCCATGGCAGAACGCACAGTGAACTCAGGAACTCGCTCTTGAAATATCCAACAGAGAACATGTCACCCTTCCTACAGAAAGACTCAACATACAAAATCAATGTCTACACTTTCAACAAGACTCTAGAGTTCGAAGATAGAATTAAGAAGATAGATGCAATGGAATATCTCTCATTCGAGGGAAGGGTCAATCTACGGAACCCTAAACACATCTTCTGTCTGTTGGAGGACTATGGAACTGACCCTAACGACATCCCAGACGAGCCCCTCTACATCTACTTTGGGAGATGGATTGCAGATGGCCAGCGTGAGTTGATTCGCTCTCACAGTGTGAAGAACAGGCACTTCATAGGTAACACCAGTATGGACGCTGGGTTGTCTTTTATCATGGCCAACCACGCCAGTGTCAAGGCTCACGACCTGGTCTACGACCCCTTCGTTGGGACTGgTAGCCTCCTGGTTGCATGCTCTCATTTTGGTGCATATGTCTGTGGAACGGATATTGATTACAACACCATCCATGGGATAGGAAAAGCGAGTCGTAAGAACCAGAAGTGGAGGGGTCCAGATGAGAACATCAGAGCCAACCTGCGTCAGTACGGCTCAGAGAAGCTGTATGTGGACGTCCTTGTGTCTGACGCCTCCAAGCCTATCTGGAGGGACGGAGTGCTCTTTGACGCCATCATCACTGACCCCCCCTATGGGATTCGGGAGTCAACCAGGAGAACAGGCTCTCAGAAGGACAGTGTAAACAGTGTGAAGCCATCTGAAGACTACGTTGGAGACAGCCATGTCCCCGTTTCCATGGCCTACCACCTGAGTGACATATTCACTGACCTGTTAAACTTCTCAGCTCAACACCTGGTCATCGGAGGGCGGCTAGTCTACTGGCTACCAATCTACAGGCCAGAgtacTGTGAAGAGATGGTGCCCCTGAATGCCTGTCTCAGACTGGTCAGTAACTGTGAACAGACCCTTTCCAGCCACACCTCCAGACGTCTCATCACCATGGAGAAGATCAAGGAACCAGAGTCTCCTCCTGGCAGGCTGTATCCAGCAATGCTGCTCAACCCAGTCTTCAAAGGCTTCTGCTTTAGAGGCTGTAATGgcttgactactgtaatgctatTCTGTCGGGTCTActcaagaaagccattggtcaactgcaaaacatgcagaatgctgcagcacgggtactgCCCAAGACCAGATGAAGAGCGcacattacaccggttttaaaGTCTCTGcgctggctgcctgagaCAGATGCGCTGGCCCACCTGTCAGACCCTCACTTTAGCCCGTACCAAGGCCACAACGCCTTCAGGGAAAAGTACTTCAGCGGCATCAGCAAGAGGACATTGACAGGAAAGGAGGAGACCAACAAGATGGCCGCCAACGGTGGGGAGTGATGTAAGAATCACAGGATGGCCCAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146792 lncRNA upstream 53959 26861292 ~ 26863437 (+) True G127200
TU146789 lncRNA upstream 58011 26857698 ~ 26859385 (+) True G127198
TU146810 lncRNA upstream 62267 26834107 ~ 26855129 (+) True G127216
TU146804 lncRNA upstream 86700 26830195 ~ 26830696 (+) True G127211
TU146802 lncRNA upstream 88945 26828248 ~ 26828451 (+) True G127209
TU146854 lncRNA downstream 2295 26936418 ~ 26936967 (+) True G127256
TU146996 lncRNA downstream 5549 26939672 ~ 26939929 (+) True G127376
TU147001 lncRNA downstream 8033 26942156 ~ 26942373 (+) True G127381
TU147010 lncRNA downstream 14105 26948228 ~ 26948446 (+) True G127390
TU147016 lncRNA downstream 17815 26951938 ~ 26952282 (+) True G127396
XM_036934604.1 mRNA upstream 8229 26904901 ~ 26909167 (+) True LOC110533712
XM_021556215.2 mRNA upstream 13985 26897929 ~ 26903411 (+) False LOC110485145
XM_021556222.2 mRNA upstream 13985 26899889 ~ 26903411 (+) True LOC110485145
XM_021556171.2 mRNA upstream 94060 26813484 ~ 26823336 (+) True LOC110485096
NM_001160642.2 mRNA upstream 137917 26770464 ~ 26779479 (+) True rwdd1
XM_021556276.2 mRNA downstream 213757 27147880 ~ 27175747 (+) False LOC110485212
XM_021556285.2 mRNA downstream 244864 27178987 ~ 27182559 (+) False LOC110485224
XM_036943823.1 mRNA downstream 245485 27179608 ~ 27182559 (+) True LOC110485224
XM_021556549.2 mRNA downstream 354049 27288172 ~ 27303644 (+) False LOC110485466
XM_021556555.2 mRNA downstream 354049 27288172 ~ 27303644 (+) False LOC110485466
TU146788 other upstream 56154 26857698 ~ 26861242 (+) False G127198
TU146777 other upstream 121634 26794210 ~ 26795762 (+) True G127190
TU146263 other upstream 288747 26626849 ~ 26628649 (+) True G126727
TU145896 other upstream 867292 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 1159543 25682880 ~ 25757853 (+) True G125934
TU147247 other downstream 214053 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 255868 27189991 ~ 27190593 (+) True G127644
TU147350 other downstream 367955 27302078 ~ 27303555 (+) True LOC110485466
TU147867 other downstream 782359 27716482 ~ 27717163 (+) True G128185
TU148132 other downstream 1154524 28088647 ~ 28089445 (+) True G128436

Expression Profile