RNA id: XM_021556276.2


Basic Information

Item Value
RNA id XM_021556276.2
length 2552
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110485212
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27147880 ~ 27175747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATAAGAGAGTGAGTTGGAGTGGGGGAATGAGTATTGCACGCAAAACTGAAAAGAGCTGAAACTGCGCATATTATTTTTGCTTTAACTGTCGACCAATGAGAGGTGCGCGACAATCAAGAGAACCAACACATTCTCACCTCATCGAAACGTGTTACTTTATTACAGTTAGGTGCTGCTGCTGCCAGTGACGCGCGCGGCTCCCAGTTTTGGTCTAATCGATTAGATGATGGGGATGACGCGATGACCTCCTCCTACACGCAGGGCACAATAAAGTAGCCCTCACACCTGGACGTGCGGCGAACTTCGAGAGAGTATCAGTGGAGGATACAGGAAGACAACTGAAACTGTATCAATATGCCAGCCTCGATTATATGATCTACGCTTTCTTTCTTTTAGTATTTTACTTTTCCCGCGGTGGGTGATAATCTAACGGTTTGATTGTGGGAATATGCTCACTACGGATACCTGATTTGGTCTCGCTTTGTGGCACACATGAAGATTCTATTAAGGATGTTACTGTCTAAACGGCCCAGGTGTCATTGGGCCATCGTAAAACAGACATCACTCTCTGCGCAGAGCAGGGGATTCTGCTCTTTCCAGGAATAAGACAACACATTCCCTCTCAAAAAAGTGGAATCAAAGCTGCACTTTTCTGGAGGACATTGACATTGGCTATTCAAGTCATCATCTCCGGGTTACTATGCAATTACAACTGATCTACTTTGTTTTGATCTTGCACTGCATGGAATACACTGATTGTCAGCAGCACCCCTCTAGGCATCGGCAAAATAAACAGAACCAAGGGGTAAGCTCAGGGTGCCAGGGAGGCTGTCTGACCTGCTCTGATTACAATGGCTGTCTGTCCTGTAAGCCCCGCCTCTTTATCTTCCTGGAGAGAAATGGGATGAGGCAGATGGGGGTGTGTCTGCCCTCCTGCCCCAGTGGTTTCTACGGCACCCGCTCACCAGACAGAAACACATGCACAAAGTGCAGGCCGGAGTGTGATTCTTGCTTCAATAAGAACCTTTGCATGCGGTGCCGAGCGGGGTACTATCTCCACCTGGGCAAGTGCCAGGAGAGCTGCCCAGAGAGCCTGGTCTGCAGCGACACACAAAGGGAATGTGTTCCCAAGTGTCCTGCGGACTGTGATGCCTGTCTGATCAATGACACATGTACAAGGTGCAGACCAGGCCTGTACTTGCTGCTGGGGAAGTGTCACCACGTCTGTCCAGACGAGTTTGAACCAAATGACAAACTCATGGAGTGTTCCCTTCAAGTGCACTGCGCGGTGGGTGAGTGGGGCGAGTGGAGCCCCTGCTCCCGGTCAGGGAAAACCTGTGGATTTAAATGGGGTGAGGAGACGAGGACCCGGGAAGTTGTCCAGTTCCCTTCCGCCTACGGAAAACTCTGTCCCCCCATCTGGGAAAAGAAAGAGTGTGTCCTCAAGAGGAGGCGATGTCCAGGGCAAGGCAAGGGGAGGAAGGGTGAGCGGCGGGGCGAAAGGAGAAATCGGGACAACCGCCGGGACAAGGACAGCCAGGGGGAAGGCCGGCGGGAGAggaagaaggacagagagagggagaggggggaggcaggtgaCCGGGAGGACTctgagaacaggaacaagacagaGCAAAGACGCCGGAGAGGCCAAAACAGAGACCCTGTTGTCTCACCTGAGGGAGGAGGTCCTGAACAGTAACAGAGCCTGGAGGAGCCCTCTCACTCCACCCCCTCTTTGTCACCCTCGCCCCCTCAACTCCTTGCTGATGGGGTTCTGCTGCTACCTGTATTatttaaatatatactgtatatgcacaAGAGAGATGGGGTCACTCGATCGGGCCACTACAGACTCTAAGGACTTCTCCcctacatacctacctacctaccctcctccaccacacaCCACTGAGAGGCCGCCTCCcccttcctgtcctgtcctctagtttcaccagaccagagagaaCCAAGACTGCTGTTGATTGGACGGGAATGTACAAAACTGCTCTTGTGATTAGATGGGACTgtacagagaggagagcagtgaGACATTGAAATGTGACAGTATGGGGATGATGATGTGTTTGTCATTGGGAGTCGGGACAATGTAAATGCTTGTTGAATCGGTTATTTAAAAGGCTCCCACCCAGTTAAAAACAAACTTTGTGTCTTGGTTTCAATGTAGGTTTAATTTGTGACATTATGTagaattgttgttgttgtttaaatgtatttttgtttttgtttgttgttttttgctGAGTAAATTATCATGGGATATCAgtaacagaaagacagacagtcaGATGTGGTTACTGCATCCAGATGTATAGTAAACATGAGACAAACCGACTGAATTGATTTTGTGACAGAATGAGGACGGACCTCAGTGTTTTCCTCACAACTTATTATTGGTCATGTTTGTTCAGAAGCGTCCTGGACAAAGTGCTAGTTTGCCTATCTGTGTAAGCGGGATTTGTGCTTTCACTAAAGCCACCTGAGCAGAAATCAAAAGCATCTGTATGTCAAATAAACTATAATGGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147237 lncRNA upstream 6370 27141213 ~ 27141510 (+) True G127608
TU147200 lncRNA upstream 35367 27112208 ~ 27112513 (+) True G127571
TU147144 lncRNA upstream 93029 27054632 ~ 27054851 (+) True G127517
TU147140 lncRNA upstream 97211 27050337 ~ 27050669 (+) True G127513
TU147130 lncRNA upstream 103146 27044496 ~ 27044734 (+) True G127503
TU147336 lncRNA downstream 94386 27270133 ~ 27270723 (+) True G127702
TU147343 lncRNA downstream 104771 27280518 ~ 27280720 (+) True G127709
TU147346 lncRNA downstream 107643 27283390 ~ 27283688 (+) True G127712
TU147331 lncRNA downstream 132781 27308528 ~ 27310040 (+) True G127697
TU147333 lncRNA downstream 134820 27310567 ~ 27312496 (+) True G127699
XM_021556256.2 mRNA upstream 213402 26917479 ~ 26934478 (+) True LOC110485187
XM_036943774.1 mRNA upstream 213757 26917395 ~ 26934123 (+) False LOC110485187
XM_036943786.1 mRNA upstream 213757 26917396 ~ 26934123 (+) False LOC110485187
XM_036943780.1 mRNA upstream 216521 26917395 ~ 26931359 (+) False LOC110485187
XM_036934604.1 mRNA upstream 238713 26904901 ~ 26909167 (+) True LOC110533712
XM_021556285.2 mRNA downstream 3240 27178987 ~ 27182559 (+) False LOC110485224
XM_036943823.1 mRNA downstream 3861 27179608 ~ 27182559 (+) True LOC110485224
XM_021556549.2 mRNA downstream 112425 27288172 ~ 27303644 (+) False LOC110485466
XM_021556555.2 mRNA downstream 112425 27288172 ~ 27303644 (+) False LOC110485466
XM_021556584.2 mRNA downstream 145803 27321550 ~ 27331169 (+) True LOC110485500
TU146788 other upstream 286638 26857698 ~ 26861242 (+) False G127198
TU146777 other upstream 352118 26794210 ~ 26795762 (+) True G127190
TU146263 other upstream 519231 26626849 ~ 26628649 (+) True G126727
TU145896 other upstream 1097776 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 1390027 25682880 ~ 25757853 (+) True G125934
TU147273 other downstream 14244 27189991 ~ 27190593 (+) True G127644
TU147350 other downstream 126331 27302078 ~ 27303555 (+) True LOC110485466
TU147867 other downstream 540735 27716482 ~ 27717163 (+) True G128185
TU148132 other downstream 912900 28088647 ~ 28089445 (+) True G128436
TU148197 other downstream 1075095 28250842 ~ 28547915 (+) True G128490

Expression Profile