RNA id: XM_021556512.2


Basic Information

Item Value
RNA id XM_021556512.2
length 2725
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110485403
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27215972 ~ 27231128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTCAACCTTGCTTTATCAGTGGGCAAGAAACCGGTACATCAGTCATACGAGCTGGACAAATAGCTAGCTATACGAGGCTAACCCATTTTGACGGACTCAAATGTTACATGAGTGACAGCTAGCTAACGCGTTAGCGGCTAGGTGGCTGACAAGCTAGCGATGATCGTGGTTTTATTGTTTGCCCTGTCAAAACCGTTATTTTTAGCCGGCTAACGTTACCTTTTGCATATTCTGTCAATCATCGAGATCAACTCAAATGGCAGAGAACTGGCAGGACGCGACCTGTCAACAGGTCAAGTTGATAGCAGGTCGCCTGAATGAGCTTCTTTCCACTGGCCTAGACCTCTTGCACTCAGAACTCGGGGTGGATTTTGGAGTGAAGCCCGAGATTCCGCCATGGTTGATCTTCTTAGCAGCGTGCATTGGGCTCGTGCTAATGGTGGCTATGTGGGCCTCCGCATGTCGCAGGCTCTTCAAGAAGCGACCGACCATAGTTGAAATTGAGACCGTTGAAAGCACTAAACCAGCTTCTATCAAGGTGGCAAAAACAGAGGAACCGAAAAAAGCGAAAAGGAAAACTACAGAAAAGAAATCACAGCCAAATGGTAGTGTAGTTGCTGAGCTACAAGAGGACGTCAGAGTGACTGAAGACAACCTGCCAGTAGTGCCACATCATTCTCCTCAAATCAAGACAGAAAAGGCTTCTGAGGTAAAGAAGACCAAGAAGAAGCAGAAACAGGCAGTAAAGGAGGCTAAGACTGCTTCTTCTCATGGCAAGGAATCAGAGGAAGTATCAGGCACCTGGGAGACCAAGATCAGTAACAAGGAGAAGCGTGAGCAGCGCCGTAAAGACAAGACCTCCGGTGACGGCTCAGGGAGCCCTGGAGGAGTGGATCCTCTGCCTAGTACTCCTCCCACCGAGTCAACCAAGGCCAGCCCCAAAGCTGCATCCCCTGGGTCTGTCTCTGAGAAGAAGGAAAAGAAGAAGAAAGCTATCAGCAGTGAGGAGGCTCCGGTAGTGACTGAAGAACGGCCTGACCTGGCTGTGACAGCCCAAGAGGCCCCAGCCCTTACCATTTTTCCTGATGAGGGGCACTGGACCACTCCTGAGAGCAACCAAGACACCGCTGTCTGGGGGCAGGAGACTGAAGGAGGATGCACTGTCAATGATGCGGGGATAACATCAGCTTTTAGACGTGATTTGTTTTTAGAACCCCAGCTGCTATGTCCCAGCCCGCCTAAGCCCCAAGTGGAAGACGAGTGGTCTGGTCTGAATGGTGATGGGTCTGCTGCTGCAGCAGACGGGTACTCTGACTGGAATGCCCCAGCGGAGGGGTGGGAGAACTATGGGGAACTCCCTGCTCCAGTACAGGCTGTCCCCCCTGCCCTCGAGGAGCCCCTGCCAGAGACTGTCAAGCAGGTatctgatgaagagagagaaaaggcggagccTGCCGCTGATGGGACTGGTAAATtgaaaaagaagaaaaagaagaagaagaagcaagCTGAAGATGCTGTAGTTACTGGCCAGGAGTCAGAGGAGCCAAGTAAAAAGGTTGTTACTGAGGCCAAGGTGAAGAAGCAGCCAATCAAGGAGCCTGCTGCTCCTACTGTCCAGGCTGTCAACGCTGCTGCTGTGAAGGCAAGAGTGGAGCAACCAGTGGTGGTTCAGAACACAGCCCCCATCGCACAAGTGCCACCCCAACCCGCAGAGACAAAGCCTACTGCCAAGCAGAACAGTCTACCTGCTCCAACACATAAAGAGAGCCAGCCTTCCAAACCAGTGATGAAGAAGAAACGGGCAAGAAGAGAAACATGAATTGTAGTCATGAACATGAAGTGTTATGCAAAATACTTTGGATAAAACAGCTGTTCATCCTGTTTGTGCAACATTTAAATACTtgcccttttaaaaaaaaaaatgaaatatcaaacTTCTAAGTTCTGACCGGCCAGCTTCATGTCCAAAATGCAGCCTGGTCAAGCAGACTGGATCTAGATTAACTGCAAAGCTAAATTCTGCGATTCTGATCAATATCGTAGTGTGGACACACACATATGAAAACTGTTTTCCAATTCCAATGAATCTTTCGAACGATCATGTTTGATGATTAGACATCTAGAAAATGACTAATAAATCCTGATTTAATAGGGATTGGGATGTTGTGGCTTTGAGATTAATATTATAGAGGAAGGTTCAGCTGAGTCACGTTAACATTACTGGCCTTTATTCTGCAGTCTTTGTTTGCTGTTTATATCGTTAACCATATTGGTGCAGTGACTCATGCTCAAAAGGTCAAGTCCAACACTATAGGGTCGTGTTCAATAGGACACATGGCAGCAAACCGTTTTGAAAGGGAAAAACTAAATAAGCGATTGCTATctgacaagttcaggtagtcctcCCCGTTTCAGTCCATGTTGtactgtttggtgcctaatgaacacgacccaagGGAATCATGTTTAGCATTTGGATGCAGGTGGTGTTAGTGGTATCTGCTGTACATGGAAAAGAGACATACTTTCAGTTACTTGCTGTTATTTTGACCATCAGTGTTGTGCTCAGATGTGTAGTTGCTTCTACCATTGATGGCTGTGTTGTCCTGTCCACCCGTGGTTGATGATTCAAAAGTCCTTTACCTTTTGTAACCTCTTTGTAATAAAAACGCTTCAAGCCatatgtaaaaaataatacaaaataaaggcCCTTTTCTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147570 lncRNA downstream 30325 27184532 ~ 27185647 (-) True LOC110485234
TU147236 lncRNA downstream 75252 27140502 ~ 27140720 (-) True G127607
TU147225 lncRNA downstream 85079 27130539 ~ 27130893 (-) True G127596
TU147208 lncRNA downstream 97299 27118446 ~ 27118673 (-) True G127579
TU147131 lncRNA downstream 171280 27044416 ~ 27044692 (-) True G127504
TU147608 lncRNA upstream 59118 27290244 ~ 27293324 (-) True G127945
TU147558 lncRNA upstream 90348 27321474 ~ 27331163 (-) True G127905
TU147658 lncRNA upstream 136765 27367891 ~ 27369610 (-) True G127991
TU147670 lncRNA upstream 158462 27389588 ~ 27389825 (-) True G128001
TU147676 lncRNA upstream 159743 27390869 ~ 27392647 (-) False G128003
XM_021556532.2 mRNA downstream 570 27203190 ~ 27215402 (-) False LOC110485460
XM_021556536.2 mRNA downstream 570 27203190 ~ 27215402 (-) True LOC110485460
XM_021556296.2 mRNA downstream 13719 27184510 ~ 27202253 (-) False LOC110485234
XM_021556245.2 mRNA downstream 298822 26911398 ~ 26917150 (-) False LOC110485162
XM_021556462.2 mRNA upstream 412 27231538 ~ 27278156 (-) False LOC110485245
XM_021556470.2 mRNA upstream 412 27231538 ~ 27278156 (-) False LOC110485245
XM_036943896.1 mRNA upstream 412 27231538 ~ 27278157 (-) False LOC110485245
XM_021556369.2 mRNA upstream 703 27231829 ~ 27278157 (-) False LOC110485245
XM_021556409.2 mRNA upstream 703 27231829 ~ 27278157 (-) False LOC110485245
TU146643 other downstream 552958 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 653845 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2439345 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2681443 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2891136 24324580 ~ 24324836 (-) True G125043
TU147564 other upstream 40134 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 535031 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 865556 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1079193 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1246060 28477186 ~ 28477831 (-) True LOC110534614

Expression Profile