RNA id: XM_021556462.2


Basic Information

Item Value
RNA id XM_021556462.2
length 9255
RNA type mRNA
GC content 0.56
exon number 56
gene id LOC110485245
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27231538 ~ 27278158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAACGAAAAAGCTTGGTAGAGTTAAGATGGCGGCATGTGGGTGAGGAGGCTGTAGTTATTAGCTCGGGATTTTTTTGTCATAAAATATTTACATGAATCCTTACATATACAGATATCGAGAAAATAACATTTCCTACACACTTGACACATTTGTGTGTTAATTTGGATTGGATCCATGACATCCATACACTTCGTGGTTCACCCGTTGCCCGGGACTGAGGACCAGCTCAATGACAGACTTCGTGAAGTGTCGGAGAAACTCAACAAATACAACTTTAACAGTCATCCACACCTCAACCTGCTGGAGCAGGCCACCTTAAAACAGTGTGTAGTTGGACCAAACCATGCTGGCTTTCTGCTTGAGGATGGACGTGTGTGTCGGATCAGCTTTGCTGTCCAGCCTGATCGTCTGGAGCTGACCAAACCAGATGGCAACGATGGTTCAAAGTTGAGTGGCAGTGGTTCAGGGACAGGAAGGAGCTCCAGGCCAGGCAGGACTAGTGATCCTCCCTGGTTCCTGTCTGGCTCTGACACACTGGGCAGACTGGCAGGCAACACCCTTGGGAGTCGCTGGAGCTCCGGGGTGAACGGTGGatcaggtggaggaggaggaggaggaggaggtggtggtggtggcagcagcagcagtgtaggAGGTGCAGggggaggaggtgtaggaggagctgtcagtggaggtggtggtggaggctcCTCTGGGAGGTCGTCTACAGCTGCCAGGGACTCGAGACGTCAGACCAGGGTGATCCGCACAGGGAGGGACCGGGGCTCTGGTCTCCTGGGCAGCCAGCCTCAGCCTGTCATCCCTGCCTCGGTCATCCCAGAGGAACTCATCTCCCAGGCTCAGGTGGTCCTTCAGGGGAAGTCTAGGAGTGTGATCATCCGGGAGCTCCAGAGGACCAACCTGGATGTCAACCTGGCCGTCAACAACCTACTGAGCAGAGACGATGAGGACGGTGACGATGGCGATGACACAGCCAGCGAGTCCTACCTCCCTGGAGAGGACCTGATGTCCCTGCTGGATGCTGACATCCACTCAGCCCACCCCAGTGTCATCATCGATGCTGACGCCATGTTCTCTGAGGACATCAGCTACTTTGGCTACCCCTCCTTCAGACGCTCCTCCCTGTCCCGTCTGGGCTCCTCGCGAGTTCTCCTTCTTCCCTTAGAGCGTGACTCAGAGCTGTTGCGTGAGCGTGAGTCTGTGTTGAGGTTGCGGGAGCGGAGGTGGCTGGATGGGGCCTCGTTTGACACGGAGAGGGGCTCCACCAGTCGCGAGGGGGAGCCCAGCCTGGACAAGAAGAACATCCCCGTccagagccctgtctctctgggcgAGGAGCTGCAGTGGTGGCCTGACAAGGATGGTGTGAAGTTTGTGAGCATCGGGTCCTTGTTCTCTGAGCTGGTGGCAGTGAGCTCTAAGGGGGAACTCTACCAGTGGAAGTGGAGTGAACCAGaaccatacagaaacacacagAACCCTTCTATCCGCCACCCCCGAGTGTCCTTCCTGGGCCTGACCAATGAGAAGATCACCCTGCTGTCTGCTAACAGCATCAGAGCCACCGTGGCCACAGAGACCAATAAGGTGGCGACCTGGATGGATGACACCTTGAGCAGCGTGGCGTCCAAGCTGGAGCACAGTGCCCAGGCTTACCCTGAGCTGCAGGGGGAGCGCATTGTGTCTTTGCACTGCTGTGCCCTCTACACCTGCGCCCAGTTGGAGAGCAGCCTGTACTGGTGGGGTGTTGTGCCTTTTAGTCAACGGAAAAAGATGCTTGAGAAGGCTAGAGCCAAGAACAAGAAGCCAAAGTCGAGTGCCGGCATCTCCTCAATACCCAACATCACCGTGGGAACGCAGGTGTGCCTGAGGAATAACCCCCTCTACCACGCCGGTGCCGTTGCCTTTTCAGTCAACGCTGGGATCCCCAAGGTGGGACTGCTCCTTGAGTCTGTCTGGAACATGAACGACAGCTGCAGGTTCCAGCTGCGATCACCAGAGAGCCTCAAGAACATGGACAAGACCATCAAGACACAGGAGATCAAAACGGAGAGCAAGCCGGAGTTGGTAAAGACTGAGATGGGCCCCCCTCCTTCCCCGGCCTCCACCTGCAGTGACACCTCCTCCATCGCTAGCAGTGCCTCGCTGCCCTACAAACGAAGACGCTCGACCCCGGCTCccaaagaggaggagaaggtgaaCGAGGAGCAGTGGCCTCTTCGGGAAGTGGTGTTTGTGGAGGATGTTAAAAACGTCCCTGTGGGAAAGGTGCTGAAAGTGGACGGTGCGTATGTAGCTGTGAAGTTTCCAGGGACGTCCAGCAGCGTGAGCACACAGCCGAGTCAGACTAGTGCTCCAGCTCCCATCACTGACTCTGACCCCTCCTCACTGCTGCAGGACTGTAGGCTGCTCAGAATAGACGAGTTACAGGTGGTAAAAACTGGTGGAACTCCAAAAGTTCCAGATTGCTTCCAGCGTACACCTAAAAAACTCTGCATCCCAGAGAAGGCTGAGATTCTGGCTGTGAATGTTGACTCCAAAGGAGTTCACGCAGTGCTGAAGACTGGTAACTGGGTGAGGTACTGTATCTTTGACCTGGCCACAGGCAAAGCAGAGCAGGAGAATAACTTCCCCACCAGTAACCTGGCCTTCCTGGGGCAGAGTGAACGCAATGTAGCAATCTTCACCGCAGGACAGGACTCTCCAGTCATCCTTCGGGATGGAAACGGCACAATTTACCCAATGGCCAAAGACTGTATGGGCGGGATCCGAGACCCTGAGTGGTTGGACCTGCCGCCCATCGCCAGCCTGGGCATGGGGGTACACTCCTTGGCCAACCTCCCCACCAATTCAACCATCAAGAAGAAAGCTGCTATTATCATATTAGCTGTGGAGAAGCAGACGTTGATGCAGCACGTGCTGCGTTGTGACTTTGAGGCCTGTCGTCAGTACCTGGTCAACCTGGAGCAGGCTGTTCTCCTGGAGCAGAGTCCCCACGTTCTCCACTCCTTCCTGGGCCACCGCTGCGACGGCAACCGCAACATCCTCCACGCCTGCGTCTCCGTCTGCTTCCCCGTCAGCAACAAGGAGACCAAGGAGGAGGAAGAAGCTGAACGGTCTGAGAGGAATACGTTTGCAGAGAGACTGTCAGCAGTGGAGGCCATCGCCAACGCAATCTCCGTGGtgtctagcaacagctctgggaACAGGACGGgctcttctagcagcagaggGCTGCGTCTGAGGGAGATGATGAGGCGCTCTCTGAGAGCAGCGGGGCTTGGCCGTCACGAGTCTGGCCCCTCCTCCAGCGACCACCAGGACCCTGTGTCCCCACCTATCGCCCCTCCCAGCTGGGTGCCTGACCCCCCTCCCATGGACCCAGATGGTGACATAGACTTCATCCTGGCCCCTGCAGTGGGATCTCTCACCACAGCCTCAACAGGGACCAGCCAGGGCCCCAGCACCTCCACTATACCAGGCCCCTCCTCCGAGCCTTCGGTGGTGGAGTCTAAAGACCGCAAGGCCAACGCCCACCTCATCCTCAAACTGATGTGTGACAGCATGGTTCTCAGGCCACACCTCCGCGAGCTGCTATCCGCCAAGGATGCCCGTGGAATGACCCCGTTCATGCTGGCAGTCAGCGGGAGAGCTTACCCAGCTGCCATTACTGTTCTGGAGGCTGCTCAGAAAATGGCCAAGGTGGGAGACCCCGGCATGACTGAGAAGGTGGAAGCAGACTCTGTGTTCATGGAGATGATTTGTCCCACGGGAACCAACCCTGACGACTCTCCTCTCTACGTCCTCTGCTGCAACGACACCTGCAGCTTCACCTGGACAGGAGCTGAACACATCAACCAgGATATCTTTGAGTGCCGGACCTGCGGCCTGTTGGAGTCTCTCTGCTGCTGCACTGAGTGCGCCAGGGTGTGTCACAAAGGACACGACTGCAAACTCAAGAGGACCTCTCCCACTGCGTACTGTGACTGCTGGGAGAAGTGTAAGTGTAAGACGCTGATCGCCGGACAGAAAGCTGCTCGCCTGGACCTGCTGTACAGACTGCTCACCACCACTAACCTGGTCACCAGTCCAAACAgccgGGGGGAGCATATCCTTCTGTTCCTGGTGCAGACTGTTGCTAGGCAGAGTGTGGAGCACTGCCAGTACCGGCCCCCTCGCATCAGAGAGGACAGGAACCGCAAGGCTGCCAATGCTGAAGACTCTGACATGCCGGACCATGACCTGGAACCTCCACGCTTCGCCCAGCTAGCCCTGGAGAGGGTGCTGCAGGACTGGAATGCTCTGAAGTCCATGATAATGTTCGGATCCCAGGAGAATAAAGACCCGTTGAGTGCCAGCAGCCGTATCGCCCATCTCCTTCCGGAGGAGCAGGTGTACCTGAACCAGCAGAGTGGCACCATCCGCCTGGACTGCTTCACACACTGCCTCATTGTCAAGTGTGCCCCTGACATTACATTTATTGACACCCTGCTGGGGACCTTGGTGAAGGAGCTGCAGAACAAGTACACTCCTGGCCGGAGAGAGGAGGCCGTCGTCGTCACCAGGAGGTTCCTGCGCTCCGTGGCCAGGGTGTTTGTCATCCTCAGCGTCGAGATGGCTTCGTCCAAAAAGAAAAATAACTTCATCCCCCAGCCCATTGGGAAGTGCAGGCGTGTGTTCCAGGCCCTGCTGCCCTATGCGGTGGAGGAGCTGTGCAACGTGGCGGAGTCGCTCATCGTGCCTGTGAGGATGGGGATCGCCCGGCCCACTGCCCCCTTCACCCTGGCCAGCACCAGCATCGACGCCGTGCAGGGCAGCGAGGAACTCTTCTCTGTGGAACCCTTGCCACCGAGACCCTCCCCAGACCAGTCCAGCAATTCTAGTCAGACTGCATCGTCCTACATCATCAGGAACCCCCAGCCTCGCCGCAGCAGCCAGTCCCAGCCGGTCAGAGGGCGAGACGAGGAGCAGGATGACATTGTGTCTGCTGACGTTGAAGAGGTAGAGGTTGTCGAGGGCGTTGCCGGTGAGgaagatcaccatgaagaccaagaggaacagggagaggagaacGCTGAGGCAGAGGGACAGCATGATGAACATGATGAGGATGGAAGCGACATGGAGTTGGATCTGCTGGCTGCTGCGGAGACGGAGAGTGACAGCGAGAGTAACCATAGCAACCAGGACAATGCCAGCGGTCGGAGGAGTGTTGTCACCGCAGCAACTGCCGGCTCCGAAGCAGGTGCCAGCAGTGTCCCTGCCTTCTTTTCAGAGGACGACTCCCAGTCCAACGACTCGAGCGACTcggacagcagcagcagccagagCGACGACGTGGACCAGGAGACCTTCCTTTTGGACGAGCCCTTGGAGAGGACCACCACCGCCTCGCACGTCAACAGTGCTGCCCAGGCGCCACGCTCCATGCAGTGGGCTGTACGCAACACCCCCAGCCAGAGAGCCACGGGTAGCGCCCCCTCCAGCTCCTCTACCCCCGCTGCGAGCTCCACCGGTCTGATCTACATCGACCCGTCCAACCTGCGGCGCAGCAGTGCCATCAGCACCAGCGCGGCCGCTGCGGCTGCAGCTCTGGAGGCCTCCAACTCGTCCAGCTACCTGACGTCAGCCTCCAGCTTAGCCCGGGCCTACAGCATCGTCATCAGACAGATCTCTGACCTGATGAGCCTCATCCCCAAGTACAACCATCTGGTCTACTCCCAGTACCCTGCTGCAGTCAAACTCACCTACCAGGATGCTGTCAACCTGCAGAACTTTGTTGAGGAGAAGCTGATCCCTACGTGGAACTGGATGGTGTCCATCATGGACTCTACAGAGGCTCAGCTGCGTTACGGCTCGGCCCTGTCCTCAGCAGGTGACCCCGGACACCCATCCCACCCCCTCCACGCCTCGCAGCACTCCGCCCGCAGGGAGCGTATGACAGCCCGCGAGGAAGCCAGCCTCCGCACCTTGGAGGGACGCAGACGTGCTGCCACTCTGCTGACAGTGCGTCAAGGGATGATGTCAGCACGGGGAGACTTCCTGAACTACGCCCTGTCTCTGATGCGTTCCCATAATGACGAGCACTCTGACGTTCTGCCTGTGCTGGATGTGTGTTCTCTCAAACACGTGGCCTACGTCTTCCAGGCCCTCATCTACTGGATCAAAGCCATGAACCAGCAGACAACTCTGGACACAACACAGATGGACCGCAAGAGGAGCCGAGAGATTCTGGAACTGGGACTGGAAAATGAAGATTCTGAACATGAGAATGATGAGGACACCAATCAAAgctCCACGCTCCAGGATAAGGAGGATGACACGGTCCCTGCTGAGATGGGACAGAACCACCCGTTCTTCCGACGCTCTGACTCCATGACCTTTTTGGGCTGTATCCCCCCCAACCCCTTCGAGGTCCCCCTGGCTGAGGCCATCCCCCTGGCAGACCAGCCTCACCTCTTGCAGCCCAATGCAAGGAAGGAGGATCTGTTTGGCCGTCCTAGTCAGGGCCTGTACTCGTCCTCGTACACAGCAAGCAAAGGTCTGGCCGAGGCCGCCCTGGACCGCAGCTGCATGGAGGTTAACATGGGCTCCTCTCAGATCCTACCCACTAAGATGTCCTACTCAGCCAACTTGAAGAACGTGATGAGTATGGAGACTAGTCAGCGCGGCCGAGAGGACCAGCCCATGGACCAGGAGCTAGTGGCTCCAAAGCCAGGCCCCTCACCCCACGACCTAGCTGCCCAGCTGAAGAGCAGCCTCCTGGCTGAAATAGGTCTCACTGAGAGTGATGGCCCCCCGCTCCCTTCCTTTAGacCCCACTGTAGTTTCATGGGGATGGTGATCTCCCATGACATGCTGCTGGGCCGCTGGCGTCTGTCTCTGGAGCTGTTCGGGCGCGTCTTCATGGAGGATGTTGGAGCAGAGCCTGGATCGATTCTGACCGAGCTGGGGGGTTTTGAGGTGAAGGAGTCTAAGTTCCGCCGGGAGATGGAGAAACTCCGTAACCTCCAGTCCCGTGACCTGGCCCTGGAGGTGGACCGTGACCGTGACCAGTTGATCCAGCAGACCATGAGGCAGCTCAACACCCACTTTGGACGGCGCTGCACCACCACACCCATGGCTGTGCACCGCGTCAAGGTCACCTTCAAGGACGAACCGGGCGAGGGTAGTGGCGTGGCCCGTAGCTTCTACACGGCCATCGCCCTGGCCTTCCTTTCCAATGACAAGCTGCCCAACCTGGACTGTGTGCAGAGCGTCAGCAAGGGCATGCAGGCCAGCAGTACGTGTCATCACGATTACAACTCAAGTATGACATTGAATCTGATGCAGCGGCTGAGGAACAGAGACCGGGAGAGGGAGCGGAGGAGTGGAGGGCTCCGAGCCGGCTCTAGGAGAGACCGAGACAGggacTCGAGGAGACAGCTGTCCATTGACACCCGGCCCTTCAGGCCAGCCTCGGAGGGAAACCCCAGTGATGAACCTGACCCCCTGCCTGCCCACAGACAGGCCCTGGGAGAGAGGCTGTACCCCCGCGTCCACGCTATGCAGCCGGCGTTTGCCAGTAAGATCACTGGGATGCTGCTGGAGCTCTCCCCAGCCCAGCTGCTGTTGCTCCTGGCCAGTGAGGACTCTCTCAGGGCCAGGGTGGAGGAGGCCATGGAGCTGCTCATTGCACATGGAAGGGAAAATGGTGCTGACAGCATACTGGACCTGGGTCTCCTGGAGGCTCCTGAGAAAGCACAGCAGGAGAACCGTAAGCGTCATGGCTCCACCCGCAGTGTGGTGGACATGGAGCTGGACGACCCTGAAGACGGAGATGACAACGCTCCCCTGTTCTACCAGCCCGGGAAGAGAGGCTTCTACTCTCCCCGACCCGGCAAGAACACGGAGGCCAGGCTCAACTGCTTCAGGAACATCGGCAGaATACTAGGGCTGTGTCTGCTGCAGAATGAGCTCTGTCCAATTACTTTGAACAGACATGTCATCAAGGTGCTGCTTGGCAGAAAGgTGAACTGGCATGACTTTGCCTTCTTTGACCCGGTAATGTACGAGAGCCTGCGGCAGTTGATCCGTCACTCTCAGGCTGGAGAGGCAGACGCTGTGTTTGCAGCCATGGACCTGGCCTTTGCCATAGACTTGTGTAAGGAGGAAGGGGCTGGACAGGTGGAGCTGCTGTCAGGTGGGGTCAACATGCCTGTGACTCCTCTCAACGTTTACGAATATGTGAGAAAGTACGCCGAACACAGGATGCTTGTGGTTGCCGAGCAACCTCTTCATGCAATGAGGAAGGGTCTGTTGGATGTCCTTCCTAAGAACGCCCTGGAGGACTTGACAGCTGAGGACTTCAGGCTGCTGGTCAATGGCTGTGGAGAGGTCAACGTGCAGATGCTCATCAGCTTCACTTCCTTCAATGATGAATCTGGGGAAAATGCTGATAAGTTGTTGCAGTTCAAACGCTGGTTTTGGTCCATTGTGGAGAAGATGAGCATGACTGAGAGGCAAGATCTGgtGTACTTCTGGACCTCCAGTCCATCTCTGCCAGCCAGTGAGGAAGGCTTCCAGCCCATGCCCTCCATCACCATCAGGCCTCCGGATGACCAGCACCTGCCCACGGCCAACACCTGCATCTCGCGTCTCTACGTGCCACTCTACTCCTCCAAACAGATTCTAAAACAGAAACTCTTACTAGCCATTAAGACCAAGAACTTTGGTTTTGTGTAGAGGTTGACAAACATGTTTACCTGTTGTGTAATATTTACCTAGTTCCATTTTTGTAGATTTGTTTTTTGTCTATACAATTTTATGGAAATCgaagaaaatacaaaaatgcTGTCGCTCCCCTGGCGGTTATTTTGTTTGTGTTGTGAACACAGACGGCTTgttcttattttattttattcttttttTAGTTCTGAAGGTAATATACATTCCTGCATTGGCTTTGTAAAGTTGAAGCCCTCTGCTCTATTGGCTTAAACCTTTTACTTCCCAGGAATTTGGCTCGACAGCAAACTGTGCCGAAGCTCAGCCAAAGAGGACCGCAGTAGAAGTAtttaaaaagtaaaagtataataaataaaaaaaaaacactgtgaTTATGATTTTGTTCCTTGCCCTAAACAGAATACTTACTATCACTGACAGTTTGCTGCTGCCTTGGTGGAAAGTTATTATTTTTCTTGTATAAGGGGAGTAGGGAATTTCAAAATAAACTTGGATGCAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147570 lncRNA downstream 45891 27184532 ~ 27185647 (-) True LOC110485234
TU147236 lncRNA downstream 90818 27140502 ~ 27140720 (-) True G127607
TU147225 lncRNA downstream 100645 27130539 ~ 27130893 (-) True G127596
TU147208 lncRNA downstream 112865 27118446 ~ 27118673 (-) True G127579
TU147131 lncRNA downstream 186846 27044416 ~ 27044692 (-) True G127504
TU147608 lncRNA upstream 12088 27290244 ~ 27293324 (-) True G127945
TU147558 lncRNA upstream 43318 27321474 ~ 27331163 (-) True G127905
TU147658 lncRNA upstream 89735 27367891 ~ 27369610 (-) True G127991
TU147670 lncRNA upstream 111432 27389588 ~ 27389825 (-) True G128001
TU147676 lncRNA upstream 112713 27390869 ~ 27392647 (-) False G128003
XM_021556483.2 mRNA downstream 410 27215972 ~ 27231128 (-) True LOC110485403
XM_021556491.2 mRNA downstream 411 27215972 ~ 27231127 (-) False LOC110485403
XM_021556479.2 mRNA downstream 412 27215972 ~ 27231126 (-) False LOC110485403
XM_021556503.2 mRNA downstream 412 27215972 ~ 27231126 (-) False LOC110485403
XM_021556512.2 mRNA downstream 412 27215972 ~ 27231126 (-) False LOC110485403
XM_021556566.2 mRNA upstream 30358 27308514 ~ 27316375 (-) False LOC110485483
XM_021556573.2 mRNA upstream 31276 27309432 ~ 27317719 (-) True LOC110485483
XM_021618192.2 mRNA upstream 103185 27381341 ~ 27385479 (-) True LOC110533720
XM_021556714.2 mRNA upstream 141490 27419646 ~ 27429158 (-) False LOC110485571
XM_036944114.1 mRNA upstream 141490 27419646 ~ 27493032 (-) False LOC110485571
TU146643 other downstream 568524 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 669411 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2454911 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2697009 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2906702 24324580 ~ 24324836 (-) True G125043
TU149009 other upstream 488001 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 818526 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1032163 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1199030 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 2590890 29869046 ~ 29878568 (-) True LOC110486376

Expression Profile