RNA id: XM_021556549.2


Basic Information

Item Value
RNA id XM_021556549.2
length 2278
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110485466
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27288172 ~ 27303644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAAATGATGGCTGAATGGAACTAGAAAAAGGAAAAGGGAAACATCTATTGTAACATTTACCACAAGTCCGACTGTCACACATCACTTCATTAACACAGTGAAGTTACATTCGATACATTGTCTTCGAATATGAGAAAATGTATGTCGTCCTTTGTCGAGCGCCACAACAATAGTGACACTGTGGAAGTTGATGAGCTGTACTATCCTGGCAGTCAGAACCATGAAGAGTCCCAGTGTCACCCTATGGCCGTGGGAGACATGGAGGCGGTGGAGGCTCTTATGTTTATGAACACCCACTGGAAAGCCAGGACTTCCAGGAGCTTCAAGCATAGACAGTTCCGACCTCTGACCCCTTCCCCTGACTTCTCAGAGGATGACTCTCATCTCTCATTTGACCCGGCTGAGGTTTGTGAGTCTCTGtgtaTGACCCCGCCATACAGCCCGCCAAACTTTGAGGCCATTCACAGTCATCCTGCTCCAGAGACAGTACAGACCTCCTGGTGCCAGAGACATAACCCACAGCCAGCACAGCAAGGCTTGACACAGCCACAGATGGTCAGCCAGCCCCGATCACAGGCCACCAGTGTGATCCGTCACACTGCAGACGCACAACACTGCAGCTGGAGCATCTGTCCAGCCGCCCCCCTGGAGCAGAGACTAAACCAACCCCtgcctccccagccccagccaagCCCAGACAGCATCAACAACCCCCTGGCAGATAGGCTATCTGGCAGGGGCTCCAAAGGGAACATGACACCCCTTGACTCCTCTGCTGAACCGGCTGCCATCCAGGCTCCGGTTACTGTAACTCTGCCAGCCTCTGTTGGTAAATTCCACCAACCTACATCGGTGTCCCCTGTCAACTGTAGGGTTTCTCCTGTTCCGGTTTATTGCCAGATACTACCTGTTGTGCCAATTGCAACGAACAGTCATATTCCAATGGTTACCACCACCATGGTGGCGGCAACCAGTCACCAACAACAGTCAGCAGCAGTTGGTCCTCCTTCATTCTTCTTCATGGGTGACCAGGTGACAAAGGGCCCTATCATCTTCTTGGTTCCCCGGCCAGTTGTCGGGATCCAGCCGTCAGTGCTGACATCTGGTGGCACCAAGCTGCCAGCCATCGCCCCAGCGCCAGGCTTCACCTCAGTGGTCCAGCGGAGCAGCCTGCAGCCTGCTGAGGTGTCCAGAGTCCGCAGCCATATCTGCCCCCACGAGGACTGTGGCAAGACCTACTTTAAGAGCTCCCACCTCAAGGCTCACATGAGGACTCACACAGGTGAGAAACCTTTCAAATGCAGGTGGGACGGCTGTGAGAGACGCTTCGCTCGATCCGATGAGCTATCACGCCACCGTAGAACCCACACGGGAGAGAAGCGTTTCGCCTGCCCCATGTGCCACAGCCGTTTCATGCGTAGCGACCACCTGGCCAAGCACGCCCGTCGACACCTGGCCACCAAGAAGGTGCCCTGTTGGCAGATGGGAGTCTGTCACAGCGGTGATGTTACACATGCAGTGTTTTCCGCACCGTTCCTTCGTCCTCTGCCCAGAATAAACTCTTGCCTCAAAGACACTGTAGAATAAGCTATTTCGTCATTAGATGGGAACTCATTCACTGTGATACTGTTCACTGAAGACTTCAATGCACATCAATGCAATTAATTACATGTTGAATTCTTTAAAAACTAAAGTTGTTTGACATGTTTAAAGTTTCTTGACTTACAGTTTCATATTTCATTCAGGTCCACTTGAGATTACGTTGTTATTGGCAGTTTAATGTGTGATGAATGATAGCAGGGTTTTTACTCATTTACATTACGTTTGATCAACTCTTACTTGTTGAAGATTATGCTAATATTATTGTTTACAACTGTGCTTTAAACTACTGACAAGACAAGATCAACCTCTTTGCATGTGGTTGTAGTGGTGGCAACTGTCCGATCTTTCTGTGGCAACCTCCAAAGTGTGGAGCAAGGTACAGAAATGTAGAAGTCAAATCTGTGAACAACTAGAGGCTTAGATAGACTCTTTCTGAATCTCTGAGCCTACCAAATAAGTCAATAACCGTTATGGATTGCAAAACTATGCTTAACTATTAGATCTTGTACATTAATTGTTTTTCTACCTAGTGAATGTGTTCAATACACTGTATATTTAATATTCATGAGAATTGTTTGGCCAAAGAAAGAATGTTATAGAAAAGTTTGTATATTTAACTTGACTAAATTACATAaattttcattgttttgttacaggtgaaataaaatgtgtaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147346 lncRNA upstream 4484 27283390 ~ 27283688 (+) True G127712
TU147343 lncRNA upstream 7452 27280518 ~ 27280720 (+) True G127709
TU147336 lncRNA upstream 17449 27270133 ~ 27270723 (+) True G127702
TU147237 lncRNA upstream 146662 27141213 ~ 27141510 (+) True G127608
TU147200 lncRNA upstream 175659 27112208 ~ 27112513 (+) True G127571
TU147331 lncRNA downstream 4884 27308528 ~ 27310040 (+) True G127697
TU147333 lncRNA downstream 6923 27310567 ~ 27312496 (+) True G127699
TU147404 lncRNA downstream 84898 27388542 ~ 27388818 (+) True G127767
TU147414 lncRNA downstream 120407 27424051 ~ 27429021 (+) True G127775
TU147468 lncRNA downstream 216343 27519987 ~ 27569509 (+) True G127824
XM_021556285.2 mRNA upstream 105613 27178987 ~ 27182559 (+) False LOC110485224
XM_036943823.1 mRNA upstream 105613 27179608 ~ 27182559 (+) True LOC110485224
XM_021556276.2 mRNA upstream 112425 27147880 ~ 27175747 (+) False LOC110485212
XM_021556256.2 mRNA upstream 353694 26917479 ~ 26934478 (+) True LOC110485187
XM_036943774.1 mRNA upstream 354049 26917395 ~ 26934123 (+) False LOC110485187
XM_021556584.2 mRNA downstream 17906 27321550 ~ 27331169 (+) True LOC110485500
XM_021556592.2 mRNA downstream 28053 27331697 ~ 27380409 (+) False LOC110485507
XM_021556609.2 mRNA downstream 28054 27331698 ~ 27380409 (+) False LOC110485507
XM_036944055.1 mRNA downstream 28054 27331698 ~ 27380409 (+) False LOC110485507
XM_021556618.2 mRNA downstream 28056 27331700 ~ 27380409 (+) True LOC110485507
TU147273 other upstream 97579 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 127527 27148176 ~ 27160645 (+) True LOC110485212
TU146788 other upstream 426930 26857698 ~ 26861242 (+) False G127198
TU146777 other upstream 492410 26794210 ~ 26795762 (+) True G127190
TU146263 other upstream 659523 26626849 ~ 26628649 (+) True G126727
TU147867 other downstream 412838 27716482 ~ 27717163 (+) True G128185
TU148132 other downstream 785003 28088647 ~ 28089445 (+) True G128436
TU148197 other downstream 947198 28250842 ~ 28547915 (+) True G128490
TU148570 other downstream 1628412 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 1636255 28939899 ~ 28981288 (+) True G128853

Expression Profile