RNA id: TU147350



Basic Information


Item Value
RNA id TU147350
length 1158
RNA type TUCP
GC content 0.46
exon number 2
gene id LOC110485466
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27288172 ~ 27303644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGGTGACAAAGGGCCCTATCATCTTCTTGGTTCCCCGGCCAGTTGTCGGGATCCAGCCGTCAGTGCTGACATCTGGTGGCACCAAGCTGCCAGCCATCGCCCCAGCGCCAGGCTTCACCTCAGTGGTCCAGCGGAGCAGCCTGCAGCCTGCTGAGGTGTCCAGAGTCCGCAGCCATATCTGCCCCCACGAGGACTGTGGCAAGACCTACTTTAAGAGCTCCCACCTCAAGGCTCACATGAGGACTCACACAGGTGAGAAACCTTTCAAATGCAGGTGGGACGGCTGTGAGAGACGCTTCGCTCGATCCGATGAGCTATCACGCCACCGTAGAACCCACACGGGAGAGAAGCGTTTCGCCTGCCCCATGTGCCACAGCCGTTTCATGCGTAGCGACCACCTGGCCAAGCACGCCCGTCGACACCTGGCCACCAAGAAGGTGCCCTGTTGGCAGATGGGAGTCTGTCACAGCGGTGATGTTACACATGCAGTGTTTTCCGCACCGTTCCTTCGTCCTCTGCCCAGAATAAACTCTTGCCTCAAAGACACTGTAGAATAAGCTATTTCGTCATTAGATGGGAACTCATTCACTGTGATACTGTTCACTGAAGACTTCAATGCACATCAATGCAATTAATTACATGTTGAATTCTTTAAAAACTAAAGTTGTTTGACATGTTTAAAGTTTCTTGACTTACAGTTTCATATTTCATTCAGGTCCACTTGAGATTACGTTGTTATTGGCAGTTTAATGTGTGATGAATGATAGCAGGGTTTTTACTCATTTACATTACGTTTGATCAACTCTTACTTGTTGAAGATTATGCTAATATTATTGTTTACAACTGTGCTTTAAACTACTGACAAGACAAGATCAACCTCTTTGCATGTGGTTGTAGTGGTGGCAACTGTCCGATCTTTCTGTGGCAACCTCCAAAGTGTGGAGCAAGGTACAGAAATGTAGAAGTCAAATCTGTGAACAACTAGAGGCTTAGATAGACTCTTTCTGAATCTCTGAGCCTACCAAATAAGTCAATAACCGTTATGGATTGCAAAACTATGCTTAACTATTAGATCTTGTACATTAATTGTTTTTCTACCTAGTGAATGTGTTCAATACACTGTATATTTAATATTCATGAGAATTGTTTGGCCAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU147346 lncRNA upstream 18390 27283390 ~ 27283688 (+) True G127712
TU147343 lncRNA upstream 21358 27280518 ~ 27280720 (+) True G127709
TU147336 lncRNA upstream 31355 27270133 ~ 27270723 (+) True G127702
TU147237 lncRNA upstream 160568 27141213 ~ 27141510 (+) True G127608
TU147200 lncRNA upstream 189565 27112208 ~ 27112513 (+) True G127571
TU147331 lncRNA downstream 4973 27308528 ~ 27310040 (+) True G127697
TU147333 lncRNA downstream 7012 27310567 ~ 27312496 (+) True G127699
TU147404 lncRNA downstream 84987 27388542 ~ 27388818 (+) True G127767
TU147414 lncRNA downstream 120496 27424051 ~ 27429021 (+) True G127775
TU147468 lncRNA downstream 216432 27519987 ~ 27569509 (+) True G127824
XM_021556285.2 mRNA upstream 119519 27178987 ~ 27182559 (+) False LOC110485224
XM_036943823.1 mRNA upstream 119519 27179608 ~ 27182559 (+) True LOC110485224
XM_021556276.2 mRNA upstream 126331 27147880 ~ 27175747 (+) False LOC110485212
XM_021556256.2 mRNA upstream 367600 26917479 ~ 26934478 (+) True LOC110485187
XM_036943786.1 mRNA upstream 367955 26917396 ~ 26934123 (+) False LOC110485187
XM_021556584.2 mRNA downstream 17995 27321550 ~ 27331169 (+) True LOC110485500
XM_021556592.2 mRNA downstream 28142 27331697 ~ 27380409 (+) False LOC110485507
XM_021556609.2 mRNA downstream 28143 27331698 ~ 27380409 (+) False LOC110485507
XM_036944055.1 mRNA downstream 28143 27331698 ~ 27380409 (+) False LOC110485507
XM_021556618.2 mRNA downstream 28145 27331700 ~ 27380409 (+) True LOC110485507
TU147273 other upstream 111485 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 141433 27148176 ~ 27160645 (+) True LOC110485212
TU146788 other upstream 440836 26857698 ~ 26861242 (+) False G127198
TU146777 other upstream 506316 26794210 ~ 26795762 (+) True G127190
TU146263 other upstream 673429 26626849 ~ 26628649 (+) True G126727
TU147867 other downstream 412927 27716482 ~ 27717163 (+) True G128185
TU148132 other downstream 785092 28088647 ~ 28089445 (+) True G128436
TU148197 other downstream 947287 28250842 ~ 28547915 (+) True G128490
TU148570 other downstream 1628501 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 1636344 28939899 ~ 28981288 (+) True G128853

Expression Profile