RNA id: XM_021556609.2


Basic Information

Item Value
RNA id XM_021556609.2
length 5205
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110485507
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27331697 ~ 27380409 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTCATATGACTGGTACCCATACGAAAACACAGCAAGGCGGGGGAAATAATAATCACTGTCCGTGGTGGTGCTGCTGTTGCAAGGGAACCGCATCTTTTCCGATGTCTTCAGGCTGCCCGGATCGTTTGTTTATCTGCGGCTCCCCGTTTATTAGTGTCATCACCGGCCTTCTCGGTCGATAGAATGAAAGGATGGCCAAGCGGCGAGATTCGGACGAGGAGAGTGGAGAGCTGATCGGCCCTGCTGCGGTCCAGCGAGATAAGACGCCGTATCCCGGGATGGCAAAAATGGACGgaatggaggaaagagggggaagtGAACTGTCTTTGGAGGAGATTTTAATGCTCTACAGCCAACCGATTAACGAAGAGCAGGCTTGGGCAGTGTGTTACCAATGCTGCATAAACCTGGCTCAGGGACATAGGAGGAATTCTGGCCCAGCTGCCGGTGCATCAGTGGTGGATACTCCGAAAAGGATTGAGGGACCACGGGATGTGAGGATTCAGAAAGACGGAGCTGTCAAATTACAATATGAAGGCTGTGATGGTAAATCCATCCCAGCTACATCAACAGAGGTGATTGAGTCTCTGGGCATCATGATCTACAAGGCGTTGGACTACGGACTGAAGGAGAGCGAGGAGCGGGAGCTGAGCCCACCCCTGGAGCAGCTCATAGACCTCATGACCAACATGGGCGAGGCCGAGAGAGACGCCTGCCCTGACGAAGGTTACGAGGCcaccgaggaagaggaggaggccgAAGACGACCCCATCAACATCTGTAATGTTCGTGGCTACAGGGACATCCTGAGGatgtgtgtgtctcacctcccCAGCCCTGGCGATGCCCCCAGCCACTACCAGGCTGTGTGCCGTGCTCTCTACGCTGAGACCAGGGAGCTACGCTCCTTCCTGGAGAAGATCAAGAGTGCCAAAGAGAATCTTCGGAAGATGGGTGGCGAGCCGTCTGAGGATCCCAGCAGAGGCCTAAATGAGCTCCAGAATGCGGACTGGGCTAAGTTCTGGATGCAGGTGATGGGAGACCTGCGGAACGGGGTGAAGCTGAAGAAGGTCCAGGAGCGCCAGTACAACCCTCTGGCCATCGAGTTCCAGCTCACGCCCTACGAGATGCTCATGGATGACATCCGCTCCAAACGCTACAAACTACGCAAGGTCATGGTAAACAACGACATCCCACCAAGGTTGAAGAAGAGCGCCCATGAGGTCATCCTAGACTTCATCCGGTCCAGACCTCCTCTCAACCCTgcAGCAGCCAGGAAGCTGAAGCCCCAGCCCCAGGTTCCTCCCACGTTGCACGAGAGGATCCTGGATGAGATCAAATCTGAGAGGAAACTGAGACCTGTCTCTCCTGATGTGATCCGCAGGAGCAGGCTGGTAATTCGGCCTCTTAGCATGTCTCAAAGTTTTGACTTGTCAGATGTGTCCAGCCCTGACGGCCGCAGGAAGACTTCCAGCACCATGACCCTCAGCAGTCTGTCCAATGGGGGGCCAGGGTTACCAGGGGGTGGAGCCCAGGCCCTATGTCAGAGGAAGAGGCTGAAAGCACCCACCCTGTCAGAACTGGACAGCTCCGACTCTGAcGATGACATCACCATTGGGGGTCAAAAGTCAGCTAGTAGCTCCAGTGTCTCTACATCGGTGGTGGACGACACCTCTCCAGAGTCTGTACTGGGCAGGAAGACTCCACCCATGTTCCTGCCCATCTCCTCAACCCCCCAGCCTGAGAGACGGCAGGCCCCCCAGAGGAGACACTCCATTGAGAAGGAGACGCCCACCAACGTACGGCAGTTCATACCCCCATCCAGACAGAGCTCCAAGTCTCTGgagGAGTTCTGTTTCCCAGTAGAGTGCTTGTCCCTGACGGTGGAAGAGGTGATGCACATCAGACAGGTGCTGGTCAAAGCAGACCTGGAGAAGTTCCAACAGTACAAGGACGTGTACAACGCTATGAAGAAGGGAAAGCTTTGCTTCTGTTGCCGATCCAAAAGGTTTTCCTTGTTCACCTGGTCCTACACCTGCCAGTTCTGCAAAAGGCCTGTGTGTTCACAGTGCTGTCAAAAAaTGAGGCTGCCCTCCAAGCCCTATGCCAACCTGCCCATCTATTCCCTGGGCTCTACCACCACTCTACCCAGGGACCGGGTAGCAGCTCTGGGGAAAGCTGCCAGTTTAGCTGGTCCAGCAGCAGCAGTTTCAGCAGGAAAAGGAAAAGCAGCAGCAGCCTCAGCAGCAGCAGGACCAagcagagcagcagcagcctccaagCCTGAGAAGCCCTCTACCAGCCACCACCGCCTCAGCCTTCAGAAGACCATGTCCAAgttGTCTAAGCACAGTAGTCTGGAGAAGTCCCAGTCCCGTGACGAGGTGGAGCTCCCAGTGGAGCTGACGGAGGACTGGAGCACCATGGAAGTGTGTGTAGACTGCAAGAAGTTCATCCACGACATCATCTCCTCCAGCAAGCACAGCCTCTCCCTGGCCACCAAGCGGGCGCGCTTAAAACGCAAGACCCAGTCCTTCTACATGTCGTCCCCCAAGGGAGCTGATTACCGACCCTCGGAAAGAACAATCAACGAGGTCTAGACTCTCCCCTCGTCCTTGTCTACCTTCTCCATGGTCTTCTAGCTGCTCCCAGAACTTATGGCACAATACAGAactctgactgactgtgtttTGATCTGGATGACCGTGCTGCGATCCGGCCTATACCAGTAGACGTGTCTAGTTTAGTCTGTCTGTCGATGCTGTCAGAGCGGGCTGTGGATCTTTACTTTTCCTTGGAGATATGTGGACTGTGTAGTCAGTGCTTGTTGCCATGTCCTCTGATCGTCACATACAGTACGAGTACTTTCAGACAAAAGGATACTAGTCCATTTTTATACAATATTTTGCTCAGTAATGTAATTTCTCCCATAATGTTTTGCCATAGAGAGGTGGTTAAGGACACTGAATGATCAAATGTAAAGTATGAGGTAGTGTAAAGATTCAAAGCGGTATGACCTCAATCACCCCCTATACTGTGGTAGGAGCTACTCGCCCACAGAAAAATCAATGAGCACAAGGCAAAATAATACTCCATATTTGAATTCCTCAGGCTGTGGTATTCTATTGTAAGAGAGTAGGTGTGATGCTAACAACACAAGTCCCATACTGAGAGCTGTGAACACCTTAAAGTGGAGACAATATGAGACAAAAGCAACAAACGATTGGATGAGGACTTGAAAGGATATGGAACTGTAGATGTTTTTTTGACAAGTTATCATTTTCTACGGTATGGTATACATGTGTACATATGGTTCGGCTTAGGTGGTTTGTGGTGAAAAGTTGTCTCCCCCTTTTTACTCTTCTTGACATGTTCAGGTTATTTTTAGCTGACGGTACAATAATGAATTATGCTCATTGATGTTCTCTGGGTTCTGAGCGGTCTTGATGAAGCATCATTTTACCATAAAGAATAACAGGTAAATAAACAGCGTGTCACTTTGCTCAAAGTTGGATCATACCCATGAAGGTAGCCCAAACCGCTCACCTGTCTCTCCGTAGGCGTTAGGGTCTACAGGAATGTCAGGTGTCAGCTTTAGTGCCAAAAGATTCCCTTCTGTCTAAATCATAATATAAAACCCACATAAGTATTTGGTGTAAATACTCATTGACCTTGCTATAGATAGCCATCGCAGCCCCCGATTAGAGCATGCTTCTCCAAAAGACGTCAGACTGCTGAATATACTGactatagaaatagaatgaatagaacgggcgtccccattcaagtcaatgatggcataatgggtggactggcagaCATTTTGAGTCTACACATGCCTAGGTCACAAATATATAGGTTAAGACAACGTCGTCATAAATCTGGGAACAGTGCCGTTGCTAACTGCCAGCGCTGTTGCCAACTACCATTGTTGTATATTATTATGGGATATTAGAATCCCGTTGTCTTAACCTTTGTCATCTTCAACCTAGACCCATGCCAGGAAGTAAAATCAGGATGTGTACCCTTCATACTGTGCTTTGCTGTTTTGTTGagtcaactcaactgacattacaaaaaatgTATTCCATTGCTTGAGTTACATCAGTTagcatcatttgaatgaacaGTCTTCATTACCATGGCAATCCAGCATCAGTTGATAGAACATTCCATGGAAATTATAACCATGGAATAACCATGGAAATTATCGCATCGCAATACCATGGAGCCATTGTGAGTGTACAGacgagtttaccagtcaaatgtACAGAGTTAGCGCTTccaagcctgttctattcattctatttctatgatacTAATGCTATGACATGATGAAGGAACAGTATTGACACAGTTTTTGTCACTGGTAGTTGAACACGAGCGATATCATTGAGCAGGTACAGTAATTATGCTAGATAATCATGACAAAAGCAGACAGAAACAGTAGAAATCACTTTTTGTCAATATTTTGTATAGCCTGTGCCCCCAAAAATCATCTAGTCTGTCCCAGTAACAAGCATGCGCCCCCAGAAATATATGCATATATGAAATGATCTCAAATGGTCTTTCTTTGCTTTACAATAGTTATGGTATGATTTAACATGCTTAAAACCACCCTCTGTTTTATTGTATAGGCAGCAAAGAATGGTATTACACGCTACTCTCATGTTCAACTCAAAGCCTCAAAATGATGCCTTCATGAATTTGTATATCAGTTGTGTGTGACTGTGGTGTGTCTTAACCATACAGTTTGTCTCTAAACCCGAAGCAGAAGCATATTTCGGGAGCCAGGAATCAGGATGTATGTATATTAAAGTGACTATTACAAATCCAGTCTTGTTCCTTATATTTCTGCCTTAAATACACTGCCTTCTTCTCTCATCATTAACATATTATTGTTGTGACAGATTGAATCCATAGCGAGTcagcatactgtatgtaaatattatttaTAGTAATGTCCGTCCATAGAGCAGGTCTGTGTTTCCTTGACACTTTACGTCACAACTAAAATCATTTAGACTTGGGGCTATTAATTTAGCCTAGATCCAAACTAAATTGCTCTGTTTGGTAAAGTGAAACAGAACTATTCAGGTAGGATCCAGGCTACTATTAACTAGTTTAGAGATTGTATCTCACAAAACAAGTCATTGCAGGACAGAATATGGACTACAGTAAGTAGAGGTGATCTATTGTGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147333 lncRNA upstream 19202 27310567 ~ 27312496 (+) True G127699
TU147331 lncRNA upstream 21658 27308528 ~ 27310040 (+) True G127697
TU147346 lncRNA upstream 48010 27283390 ~ 27283688 (+) True G127712
TU147343 lncRNA upstream 50978 27280518 ~ 27280720 (+) True G127709
TU147336 lncRNA upstream 60975 27270133 ~ 27270723 (+) True G127702
TU147404 lncRNA downstream 8133 27388542 ~ 27388818 (+) True G127767
TU147414 lncRNA downstream 43642 27424051 ~ 27429021 (+) True G127775
TU147468 lncRNA downstream 139578 27519987 ~ 27569509 (+) True G127824
TU147842 lncRNA downstream 285615 27666024 ~ 27666362 (+) True G128160
TU147845 lncRNA downstream 302025 27682434 ~ 27682656 (+) True G128163
XM_021556584.2 mRNA upstream 529 27321550 ~ 27331169 (+) True LOC110485500
XM_021556549.2 mRNA upstream 28054 27288172 ~ 27303644 (+) False LOC110485466
XM_021556555.2 mRNA upstream 28054 27288172 ~ 27303644 (+) False LOC110485466
XM_021556285.2 mRNA upstream 149139 27178987 ~ 27182559 (+) False LOC110485224
XM_036944072.1 mRNA downstream 10181 27390590 ~ 27403425 (+) False LOC110485543
XM_036944070.1 mRNA downstream 10465 27390874 ~ 27403425 (+) True LOC110485543
XM_021556627.2 mRNA downstream 23256 27403665 ~ 27408989 (+) False LOC110485528
XM_021556635.2 mRNA downstream 23256 27403665 ~ 27408989 (+) False LOC110485528
XM_036944079.1 mRNA downstream 24648 27405057 ~ 27408989 (+) True LOC110485528
TU147350 other upstream 28143 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 141105 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 171053 27148176 ~ 27160645 (+) True LOC110485212
TU146788 other upstream 470456 26857698 ~ 26861242 (+) False G127198
TU146777 other upstream 535936 26794210 ~ 26795762 (+) True G127190
TU147867 other downstream 336073 27716482 ~ 27717163 (+) True G128185
TU148132 other downstream 708238 28088647 ~ 28089445 (+) True G128436
TU148197 other downstream 870433 28250842 ~ 28547915 (+) True G128490
TU148570 other downstream 1551647 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 1559490 28939899 ~ 28981288 (+) True G128853

Expression Profile