RNA id: XM_036944150.1


Basic Information

Item Value
RNA id XM_036944150.1
length 1490
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110485628
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27651611 ~ 27678014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCTCGGTTAGCTAGCGAGACAGAAATGTCGACACCACTGCCATCTCCTCTCAGATGTTCAGATCAAACTGAACTAGCTAAGTACTACCGCAAGGCATAGCTAGTAGCCTAGactgacagacagactgcagGTTCAGGAGAGaccagtcaacaacaacaacaacatcgacCACAACAAGGGGCTAAAACGAGCAGGTGCTGGTCGACTGTTACCTCAGTTGGAAAatgtctcctcctcatcatcctcatcccTCCCTTTCTGAACTATGCATCATTGCAAAGAGAGGGCCAACTGTTACTGCCAGAAGGTGGTGAAATTATAGATATCGGTTTAGGTCAAAAGATGCACCTGATGTGCAAAGGACAAGGACAGCCAGTTGTCATACTGGATGCCCCCACTGGTATGTCCTCTGACATCTGGTTCCATGTACAAGAGAACATTGCACTGCTAACCAAGGTGTGCACTTATGACAGAGTGGGACTGGGGTTCAGTAAAAGAGTCCTGCAGAATGAAAGTACAGGGACGGAGAAAGTCTGGGGGATGTCAACCACTGGACGAATGGTGGACAACCTCCACCGCCTCATCGGTTTAGCTGGTCTAGCCACGCCTCTCATCCTGGTGGGGTCTGAACTGGGCACGCTCAACGCCAGGTTCTACAGCCATATCCATGACGCGCAGGTGTCAGACCTTGTCCTTATTGATCCCATTCCAGAGGACATCTTTGAGGAGGACCAGTGGCAGAAGTACTGGTACAGTCAGCTGGTGCCATCCCTCCAAGCTATGCAATTCTCAGCTGCCACAGGCATCAGCCGCATCCTCATCATTCTGGGGCTGCTAAAGCCAGCCATCATGGGGGACAACATCGCTGAAGACCTCATACAGAGACAGAAGTACCTCCTCAGTAACCCCGCCCACCAGAGCAGTGCTGTAGATGAACATTTTTTCCTGAATGAAAGTGCTTCTCAAGTCAGGGAAATCTCCAAATTCAAACCCCTCTCTAGTAGGACTTCTGTGAGTGTGATTATTGGGGATTCTTTTGATGAGCAAATTCCTGCTGCTCTAAACCAAATGGTGGCCCAGCTTCAGAAGACGTTACTGGAGCAGACTTACCCCTCAGCCAACCAGATCCATGTTAAAGGAGGGGACCGCAGGATGATCTACAAGAGGCCATCTGTTGTTAGCGAACACCTGTTGAAGCTGGTGTCCCAACGGCAGTCCAAACAGCAGAGCCAATGACCATAGAGATCTATAGAAGACATCTAGTTCTATTGCTCTAATTTCAAGGTTCAAATTCTGTGCCAGTGACACACTGATTCTGCTGATAAATGTCTCAACTACACTCACAACTGGAAGATGAAGTCATATGTCAGAGGTTCCATGTTTAGTTTTTTTCCAGTGATGATTTTTGACAGGAACACATGTCAAGTACAAATATTAGACAGTTTTGCCTTAATGtttgtaaataaataataaagtcTTCTGAATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147468 lncRNA upstream 82478 27519987 ~ 27569509 (+) True G127824
TU147414 lncRNA upstream 222966 27424051 ~ 27429021 (+) True G127775
TU147404 lncRNA upstream 263169 27388542 ~ 27388818 (+) True G127767
TU147333 lncRNA upstream 339491 27310567 ~ 27312496 (+) True G127699
TU147331 lncRNA upstream 341947 27308528 ~ 27310040 (+) True G127697
TU147845 lncRNA downstream 4420 27682434 ~ 27682656 (+) True G128163
TU147847 lncRNA downstream 7574 27685588 ~ 27685805 (+) True G128165
TU147857 lncRNA downstream 22228 27700242 ~ 27700863 (+) True G128175
TU147860 lncRNA downstream 29139 27707153 ~ 27707361 (+) True G128178
TU147873 lncRNA downstream 48801 27726815 ~ 27727018 (+) True G128191
XM_036944084.1 mRNA upstream 232822 27409765 ~ 27419165 (+) False LOC110485563
XM_036944088.1 mRNA upstream 232822 27410989 ~ 27419165 (+) True LOC110485563
XM_021556627.2 mRNA upstream 242998 27403665 ~ 27408989 (+) False LOC110485528
LOC110534576 mRNA downstream 229775 27907789 ~ 27909986 (+) True LOC110534576
XM_021556797.2 mRNA downstream 487146 28165160 ~ 28171323 (+) False LOC110485682
XM_021556813.2 mRNA downstream 487146 28165160 ~ 28171323 (+) False LOC110485682
XM_036944270.1 mRNA downstream 487146 28165160 ~ 28171323 (+) False LOC110485682
XM_021556822.2 mRNA downstream 487147 28165161 ~ 28171323 (+) False LOC110485682
TU147350 other upstream 348432 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 461394 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 491342 27148176 ~ 27160645 (+) True LOC110485212
TU146788 other upstream 790745 26857698 ~ 26861242 (+) False G127198
TU146777 other upstream 856225 26794210 ~ 26795762 (+) True G127190
TU147867 other downstream 38468 27716482 ~ 27717163 (+) True G128185
TU148132 other downstream 410633 28088647 ~ 28089445 (+) True G128436
TU148197 other downstream 572828 28250842 ~ 28547915 (+) True G128490
TU148570 other downstream 1254042 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 1261885 28939899 ~ 28981288 (+) True G128853

Expression Profile