RNA id: XM_036944206.1


Basic Information

Item Value
RNA id XM_036944206.1
length 6311
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC110485663
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27933389 ~ 28149986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGtatgagaaagagaaggatacgGCAAGCGTGTGCGTGAACGAATGCttgcgtgttgtgtgtgtatgtatgtgtgtgtttgtatgcgtgcTCTAATAGGCAGAGAGAAATATGAGTTGAGTATGAGCTGCCCCTGATGCACCGGTAAGTGAAGCTTGCTTTGCTGGAAGATGCCTCGCTGCTGCTTTCCCCCCTCACCTCCACTGCAAATAGATCCTGCTACTGCCCGCTATATTTTGTCGGGTTAAGTTCGGAGCATTATGACTGTACATTCCAGCCTCGACTGCTTTTCATTTAAGGACTCATTCTACCAAGATCAGGAGAAATATGGAACTTGATTGGCGTTTTCGCGTTTAATGCGTCCCTGGAGATAAACAGACGCGGGTCCGGACGGAGAGCGAGGCAGCGCAGGTGGATGTATTGTGTTTGAGGAAAAGGGCCATACTGAGGATAAAAGACACGAAGGAAAAAGGAGGAAAATGCAGTTTGATACATTGCGTCAATTTTGTAGCTCCGTTCTATCCCATTTTAATGAGGCTTTTACGCCGCCTCAGAACATTCTGCAGACGGAGCTATTCGAGCAGGCGTTGAGCAACATCGGGAAACGAAGCCCATCAGCATCTAGGGATACAAACCAAAAATACGACCAAAGGGAGGAGCGGGGTCAGTATGCCCCGGGGGACGGCACCATGCCCAGATCACCGTCCGACTACGGGGATGGGGACCCTCGGCGTGGGGCCCCACGGAGGTACCAAGATGCTGAGGCGGCGCGGGGGGAGTACCGTGGTGGGCGTGGCCGCTGGCGCTCCCAGGAGGACTACCCTCTGGACCAGGACGGGCCCTACCCTCTAGACGGGCCCTACCCTCTAGACGGGCAGCCCAGTGAGTATGAGCTGCAGCGCCAGCGCCAGGAGGAGTACCAGACACGCTACCGCTCCGACCCCAACCTGGCCCGTTACCCCGTCAAGCCCCAGCCCTACGAGGAGCAGATGAGGATGCATGCTGAGGTGGGCCGGGCCAGGCACGAGAGGCGCCACAGTGATGTGTCTCTGGCCTACACGGAGCAGGACGAGCCCCAGGGACCAATCCGCCTGTCCAGACAGCACCTGACCGAGCGCCGGCCGCCCATGGTGGGCCAACGCTCCTACTCCATGGACAGAAACTCCCCCACCCCTGGAGGCCACCACCGGATCTCCAACCAcagcccccccaccccacaccgcAGCCCCGTGCTGGGGGACAGGTCAGGGGACATGAGGCGGGGGCCAGGGGAGCCAATAGGGTTCAGGGGTCATGATTATCTGGACCCCAGCTCTGCAGTCAGGAAGACCAAGAGGGAGAAGATGGACACCATGTTGAGGAACGACTCTCTGAGCTCTGACCAGTCCGAGTCCATCAGGCCGCCGCCACCAAAGCCCCACAAAACCAAAAAGGGGGGTAAGATGCGGCAAGTGTCCCTGAGCAGCTCGGAGGAGGAACTGGCTACCACGCCGGAGTACACCAGCTGTGAGGACGTGGAGATAGAGAGTGAGTCTGTCAGTGAGAAAGGAGATTTGGATGGCCACTGGTTGGACCATGCTTCATGGCATAGCAGCGAGGCCTCCCCAATGTCTTTGCATCCAGTGACATGGCAGCCCTCCAAAGATGGGGAGCGCCTAATAGGGCGGATTCTGCTCAACAAGCGGATGAAGGATGGAAGTGTACCTCGAGACTCAGGAGCACTGCTGGGACTGAAGGTGGTGGGTGGAAAGATGACAGAATCTGGTAGACTTTGTGCTTTCATCACTAAAGTGAGGAAAGGAAGTCTAGCGGATACTGTTGGACACCTCAGACCAGGCGACCAGGTGCTGGAGTGGAACGGGAGGTTTTTACAAGGAGCCACATTTAAAGAAGTTTACAATATCATTCTAGAATCAAAGCCAGAACCCCAGGTGGAACTGGTGGTCTCTAGGCCTATAGGagATATTCCTCGGATACCAGACAGCACACATGCACAACTGGAATCAAGTTCGAGTTCCTTTGAGTCTCAGAAGATGGATCGCCCCTCTATCTCTGTCACGTCTCCCATGAGCCCCGGGATGCTGCGGGACGCCCCCCAGTACCTGTCAGGACAGCTCTCAGTCAAACTGTGGTATGACAAAGTGGGCCATCAGCTAATAGTGACCATCCTGGGAGCCAAGGACCTGCCTTCTAGGGAAGATGGCCGCCCCAGGAACCCTTACGTCAAAATCTACTTCCTCCCTGACAGAAGCGACAAAAGCAAGAGGAGAACAAAAACGGTAAAGAAATCCTTAGAGCCCAAATGGAACCAGACCTTTATGTATTCTCCTGTGCACCGGCGGGAGTTCCGTGAGCGCATGTTGGAGATCACCCTGTGGGACCAGGCCAGGGTCAGGGAGGAGGAAAGCCAGTTCCTGGGAGAGATACTGATAGAGCTGGAGACAGCCCTGCTGGATGATGAACCTCACTGGTACAAGCTGCAGACCCACGACGTGTCCTCCATGCCCCTCCCCCGCGCCTCGCCCAACCCCCAGCGCAGACAGCTCCACGGAGAGAGCCCCACGAGGAGGCTACCCATACAGAgaTCTCAGAGAATCAGTGACAGTGAGATCTCTGACTATGACTGTGAAGACGGTGTTGGGGTAGTGTCAGactaCCGGCAGAACGGCAGGGACCTTCATAGTTCCACGTTGTCTGTCCCAGAGCAGGCGATGTCATCCAACCACTGCTCACGGTCGGCAGACATGAACCGGGCGCGGTCGCGGTCCCCCAGCGTTCCCCCTCCACAGAGCAGAAGTCTGGACCCCGGCTATGACATTGACCCCGCCTCGTCTCAGTACAGCTCCTCCAGTAGAGTGGACCGGCGCAGTGTGTCCGATGACCACCACTCACCTGACAGCCATTTTCTCACCCTACCTCGATCCAGACGCTGTCAACCTAGTGATGATCATCAGAAGGAACCCAGGAACCACGGAGCCGTTGACAGGCATGTGTATCACAGCAGGTCCAGGTCAGCTGACCAGCGTCCCGCGCTAGAGCGCACCACCACCTCCCGCTCGCGGTCCACGGAGCGGCCTGACTCCGCCCTCATGAGGTCCATGCCGTCTTTACCCTCCGGACGCTCCGCCCCTCCCTCACCTGCCTTAACGAGGGCGAACCCCCGCAGCGGATCGGCCCAAACCAGCCCCACCAGTACCCCCATGTCCGACAGGAGAGGAGGTCGGCAACTACCACAGCTTCCACCCACAGGGACCAAGGGCAGAAAAGCCGGTGGGAAGAAGCTTCGCAGCACCGTGCAGAGGAGCACAGAGACGGGCTTGGCCGTAGAGATGAGGAGCAGGATGACTCGGCAGGCCAGCAGAGAGTCCACCGACGGCAGCATGAACAGCTACAGCTCCGAGGGAAACCTGATCTTCCCTGGTGTGAGACTGTCCTCCGACGCCCAGTTCTCTGACTTCCTGGATGGACTTGGCCCAGCCCAGCTGGTTGGACGACAGACGCTAGCTACACCACCCATGGGTGACATCCAGATTGGAATCGTGGACAAGAAAGGAGCGCTGGAGGTGGAAGTGATCCGAGCCCGTGGCCTTGTGGGAAAACCAGGTTCCAAGGCACTGCCAGcACCATATGTAAAAGTGTATCTTTTGGAAAACGGAGCCTGCATAGccaaaaagaaaacaaaagtaGCAAGAAAAACCTTGGATCCCCTTTACCAGCAGCAACTGCCTTTCGAAGAGGCTCCTGGAGGGAAAGTTCTACAGATCATCGTATGGGGAGACTACGGACGCATGGACCATAAATCCTTTATGGGAGCAGTTCAGATACTTTTAGATGAGCTGGACCTGTCTAACATGGTGATTGGCTGGTTCAAGCTCTTTCCTCCTTCCTCATTGGTGGACCCTACCTTGGCCCCCTTGACAAGAAGAGCTTCCCAAACGTCATTGGATAGCCGGTCATAGCAGTGTGTGGACTGATAGCATTGTTGTAGCAGCAGCACCCAGTGTTGAGGTTAAACAAGCTGCGACAGACCGGTCACGCCCCCCGGTTACACTGCATGCTTGATGTTGTGTCTTCTGAGCCTGTTTCTAGGGGTGCAAACGTGATCCTGTGTTTTGAGCAAAATGTCGCACACATTGTGCGTAGCGAGCGTCGCTCCCTCGGCCGGGTCGGAGCGCCAGCTCAGATTGGAAGGCCGTAACGGACTCCTTAGCACCAGGAATTGTCTCTAAATCGAGCGATTCCAGGTTTTCATCCAATCTTAAGCCATGGGGGTCGAAACTGGGAACCCGCTCGATGAGTTCTACAGAAGCCCTTTTCGaatgaaaaatacatgttttcgtttttaatgaattattttgttttttgtttgttttattgtcGATGTACTTGTATACCTGAAGGGGTGACTGACAGTGTTGTCCTGTCCAGAAGCTTGGTCACGCCACGCCAACAGACCTAGCTAGATATGTAAATGGAACTATGAGGATCATTGCAATAGGAGAGGTGGGGTGTCCCAACTAAAGCTCAAACTCCGAATATGAGGCCCTATATAAATACCTATAGGTAGTAGATCACACCAGAGAGACAATACTAAAGTTACTAAAGGCAATACAGAAGTGGCTACTGTACTATCGACACTCCAGAATCTATTGATCAGAACCCACAACAAGACTAACTTTTATGACTTAACGTTATTATTTCTCTGTTGATATATTGTATGAAATTTAAATGaagataaaaaattaaaaaattaatgATTTTTTTGCATGGACAAAAATTTAGCTGAAAAAAAGATAAGAAAATTATTTTCTTGAGGCTGCGACTTGCAAAAAAAGatgaagaaaaacaaataaaacacatCAGCCATTTTCAACAAtttatattatttttaaatataaatttCACTAGTGCATGGTTTTCAAAGGGGAGTGAATGCAACAGCGTGATAAAAAAAGACACATTGTTTATCATTCTTTAGACCATCCATAACATAAGTCTGTGTTTGGCAGACATACAGTAAGAGAAACTAAAATAAAAACTTTTGGAGTTATTTATCCAAAAAAACTGTTTATGTGACAAAGTGATGATGAAAATAAatgtaaattatttatttcattgtAAAGGTTTACAAGCCTTATAAAGATAAACATTACGTGCAAATTGTAcacgtctctttctctcccttgtcCCAGGGCATCCCCCTGATATTGTCCAGAGTTTCAGGACTGTTGGTTCTTTTACAGCTCTGTATCGTTTCAATAtgtctttttttttggggggggggggggggggggatttgatttgtttaacaagcATGTTGAAAAGGATTTTCTGCAACATGGCTTGGGCACACCTTAAAGTAACTCAGCATGTTTTGATAAAGAGGATGTTTGGCAGTTTCTTGTACAGTGCATGTCAACTTAGTTACTTTTCCCCCCTCACCTTCAATTGAATTCTAcagcaaattaattacttacttTCATGGCCAGACTATTAAAACGTTATAACAAAACATTCCACCAACCCCTAGATCATATTTTATTTCCACTTTTTCAAAAAGAATGACAaggaaaaatattttatattcatTGGAGGTTGACAAAAAAGTTGTGGTTGCAAGTGTATTTTATTTCAGTATTGTTAACTAACATGCAAAAATAATCTGTATTGGTACAGCAAGAAGGATATTTATGTCCAAGCAAGAAGCGGCAAACATACAacttatgtactgtatattgctgTGTAGTTCAGGCACTGTTTGTGAGGACGagtaaaacacaaggtcaaacaACATGGGATGTTGCCACACTATAtgaattttgtttttttgtttttgtgaaaaggacatttatttcatatttttattcGTTTATTTACAAGCCAAGACcagttttgtttttttatttttagtaatTATAAATGCTTCTTGTGTATGGAAGGTATAAGAATCTTACAGTTATGTCTGAATGAAAATAAACTGAGACATTATTCCTTTTCCATGTTAAACCTATACATTCTAATGTCCATCCAATATCTTGATGCTATATACTTTCATTTTTGATTTACATTGTACATATTAGAAATTTGAATAAAACAAGCAAACTCAAATAGATGAATACAATATTTTGGAATAGGAATAATGTCTCACATGATGACAAAGACATATGTTATTTACCCTTTTGAATGCCTTTTCTTTCTTTTGTTTTGGTGCAATGTGTTTATGCCAAGGCTATGTCTTGGTGAAGTATGGTTGAGTACAGAGATTTATGTAAGttatttttcaaataaaaaatggATATTACACCGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149142 lncRNA downstream 1679 27929485 ~ 27931710 (-) True LOC110534585
TU149114 lncRNA downstream 5892 27927271 ~ 27927497 (-) True G129346
TU149140 lncRNA downstream 9473 27923497 ~ 27923916 (-) True G129371
TU149137 lncRNA downstream 13632 27919493 ~ 27919757 (-) True G129368
TU149128 lncRNA downstream 27604 27902365 ~ 27905785 (-) True G129360
TU149228 lncRNA upstream 2598 28077105 ~ 28077330 (-) True G129453
TU149229 lncRNA upstream 5356 28079863 ~ 28080202 (-) True G129454
TU149230 lncRNA upstream 5929 28080436 ~ 28080742 (-) True G129455
TU149240 lncRNA upstream 10398 28084905 ~ 28085138 (-) True G129465
TU149241 lncRNA upstream 10997 28085504 ~ 28085782 (-) True G129466
XM_036944233.1 mRNA downstream 3573 27927664 ~ 27929816 (-) False LOC110534585
XM_036944134.1 mRNA downstream 108276 27678308 ~ 27825113 (-) False LOC110485644
XM_036944138.1 mRNA downstream 108276 27678308 ~ 27825113 (-) True LOC110485644
XM_021556680.2 mRNA downstream 300279 27419646 ~ 27633110 (-) True LOC110485571
XM_021556707.2 mRNA downstream 385591 27419646 ~ 27547798 (-) False LOC110485571
XM_021556843.2 mRNA upstream 77982 28152489 ~ 28164855 (-) True LOC110485705
XM_021556854.2 mRNA upstream 178118 28252625 ~ 28265466 (-) True LOC110485712
XM_036944341.1 mRNA upstream 243538 28318045 ~ 28328821 (-) False LOC110485793
XM_036944333.1 mRNA upstream 243538 28318045 ~ 28328849 (-) False LOC110485793
XM_036944327.1 mRNA upstream 243538 28318045 ~ 28329185 (-) False LOC110485793
TU149009 other downstream 166857 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 655265 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 1270375 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 1371262 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 3156762 24775220 ~ 24776627 (-) True G125305
TU149117 other upstream 22175 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 235812 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 402679 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 1794539 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 2815186 30889693 ~ 30895983 (-) True c2h8orf37

Expression Profile