RNA id: XM_021556787.2


Basic Information

Item Value
RNA id XM_021556787.2
length 3930
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110485672
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28171846 ~ 28180205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGAGTAACTTGGCTAGTTAGCTCTGCTTTCAGGAACAATAACACTGGCATTTTACCCGATATATTTTGGACGAATTAGCTACAAATAAAGAATAGGGACGTCATTATTTTTGCCATAACGTGTGCCTTGTGTATTTGGGTCTTTCTAGCAAACGTTAACtaccttgcttgctagctaaggAGGTGACGACGTTATAGAGCTAGCTATGTGTGTGACCTTATCGCTGAAATTGTATTGCTGGCGTCATTCATTGCCATTGGTGGGAAAGTATTGATGCACAGAAATCAGCATCACTGTACTACACTGGTATTGTTTTCACTTTGTGTAAACTCTACTGCGCAGACTCGCTATCAAATTATGTAGGAAAGCTAGCTTTCTCAAATTGAGGGAATAACAAACGGTGTTGGAGATCACATACCTACACTACAGCTAGCAATGAAAATAGATTTATTATGAAAACGTCCACTGTCAATTTATTACGTAGGGTGAGCCAGGCTCAGGGCCCAGCAGCCGTAATGCCAGTGTGGAGCGGGGGATGGACAGGGAGAGGCAGTCGGACACCTCAGATAGCGAAACCACAGATGTCAGGAGGATAAACCAGCAGCCCGGCATCAGGGAGGGCAGATACGACCCCAATAGgtTCCGTCTGCACTTTGagaaggagagcagagatgaggtggagaggaggaagaagctTGCTAGAGAGAAGGTTCTGGACCAGATGTTAGACAAAGACCTGGAGGTTGACATCAACGACATCTACCCCACAGAGAAAGGTCTTGAGTTTCCGCGGCGACCTCCGTGGAATTATGGGATGAATCGTGAGGAGCTGCTGAAGAAAGAAGAGAAGTCATACCGGGAATATCTGAACGACCTGCACTCCAGAAACCCACCAGGATCCCTCAGCCACTTTGAGCACAATCTGGAGacgTGGAGACAGTTGTGGAGAGTGTTGGAGATGTCCGATGTGATCCTGCTCATCGTGGACATCAGGCACCCGGTGCTGCAGTTTCCCCCAGCGCtgtaccactacatcactggggaGCTGCAGAagcaggtggtggtggtgctgaacAAAGCTGACCTGTGTCCCCCTCCGCTGGTGCTGGCCTGGACACACTACCTCCAGACACAGTTCCCCCACCTCCACTGTGTCTGCTTCACATCACACCCCGGCCAGCCATACAGCACAGTGCTtcagaagaagaggatgagaaaAAAGGGTACATGTGGGTGGGGACATGCTGGAGGCCCCACCCACATCCTGAAGGCGTGTCAGGAAATCACAGCAGGAAAAGTGGACTTGTCCAGCTGGGAGAAGAAGATCCAGAGAGATGCGGTTGCTATGGGATCAGAGGGAGAGCAGTCAGAGGAGGGGGCCGACTCTGTGCTAGTGGAGCACCAGAGTGATGTTGCCATGGAGATGAGCAGCCCCTCCCAGGAGCTGTATAAAGATGGCGTACTCACGCTGGGCTGTATAGgctTCCCTAACGTGGGGAAGTCATCAGTATTGAACAGTCTGGTAGGTAGGAAGGTGGTGAGTGTGTCTCGAACCCCCGGCCACACCAAATACTTCCAGACCTACTACCTCACACCCACGGTCAAACTGTGCGACTGCCCTGGACTGGTCTTCCCTTCACTAGTCAACAAACAACTACAGATCCTAGCTGGTATCTACCCAGTGTCTCAGCTGCAGGAGCCCTACAGTTCTGTGGGTTATCTGTGTGAGCGGACCCCCTTCCTGTCGGTGCTCAAGCTCCGGCACCCCAGCGTGGAGGGCCCACAGCATGCACccaagggaggggagaaggagagagagcagggacccGAGCACAGCTGGACAGCCTGGGACGTGTGTGAGGCCTGGGCAGAGAGGAGGGGTTATAAGACAGCGAAGGCAGCTCGTAACGACGTGTATCGGGCAGCTAACAGTCTGCTGCGGCTGGCCGTTGACGGGAGGCTGTGTCTGTGCCTCAGACCACCTGCATATAATGATCAGAGAGAGCAGTGGGAGTCCCACCCAGACCTGGCAGAGATCATCGCTCTACAGGGACGGAAGGaagaggggacaggggagagggaggaggaggaggagggggagtccagctctgagccggaggaggagagggatagggatgctgatgatgatggtgatgatgatgaagatgaaggGTTTGGACACCCAGCAGTGAACGAGAGGAAGGGGCCAACCAGCCTCACAGTCAATATGTTCGATGTCCTCCGGGAAAATGAGTGCGAGTGAGGGAGAAAGAATGAATTAAAAATACAAAGTGCTtgatctctccctccactctgcaCCTTCATTCTATTTTCCTTTCCTTGACTTGCATTCCTTTTACATTCTGACTCTTctttcctctattctctctccccgCCCCTTCCCCCTCCCAGAGGTTACTAAAAGCACTCTGatattgtataaaacattttcatTTCTCCATGCTGTGCCTCTGCTCTGCTTGTACACCCATGCAGCTGTACTTAGACTGCGTTTAGACaggtagcccaattctgatattttttccacagATTGTTCTTTTGACTAATCACATCCTATCTTTTCACATCCAATCTTTATCACAGCTGATTGGTCAAAAGGCCAATTAGTGAAggaaagatcagaattgggctgcctgtctaaaccaTTGTAGGATtacaatttttttgtttttgtcattTTCCTGCATGTAGGattttacttttatttccctTAAAGCTGGTAGGGGCATTGTGGTGTATTAATCATTGATTGGTTTTCAATCTGTTAATTGATAAGTGGCCTCACAGCTGAGATGCCAAAGGTCATTAGACCATAGAAATGTAATGGCTTGAACTGACACGGTTCTGGATTCAATCTCATGTTGAAGGTCACACAGTCTAAATGGGGATTAGACATTGATGATGTCATCCACATGGGACTTCCATTTGGGTGCCAGTGCAGATTTATGACATCACTGTCTAATCCTGGTTGATTTCACTGTGTACAACAGTATGATAGTACTTCTGTAGAGTCGGGATGTGTGGAATTCGGCATTCCATGCTGCTTTCAGTGGTAATAATCATTGTCAAACCCATTTATATGATTCTACCCAATTCAGTGTTCTATTTTAGGGTCCACTAGGGGCAGTGTTTGTCATTCCTGGTGCAGCCACTCACGTGCAGCACTGTATCATGcaaaactgactgactgacttgatAAAGAGAGAGTTTGGCCACTGCGGTTTCAACCAAAAAGCACTCTGATGGTATCACATGGTTCCATAGCAGCCAATATTGACCAATACAATAACGGTCCTGTTATTGATCCTAAATTATACCAGCTACGCAAACCAGCTGAGTAGCTAGAATTTAGAACGAGAGTCTAAATTCTGGAAGAATGGAACGACATTAATGTTGGTTAAACTTCCATCTCTATGGCTCTGTTCTAATGTTACAATCTGTTCGGGCTGGATTCTAGTGTGCTGTTGCCTACTGTTGTACCTCATTGttcctgttctactgtattacatGTCACTCTGAGGGAACACAACAGCACAGTGCTGCGTTACCATGTAACAACATGCACTGTTCTGGTCTATACCAATGGCACActgagaaatatacacactaggGCCATAGGTTTTTCCTGTCTGTGTGACTGATCCGGGCCGGTGTGTGTCTAAGCAACAACTAGGGACCCAGCAGAGGTTTTCCTACCCAcgtgaccaggaaaaactccttTCCCTAATACACACCTCTCTGGTTTCCGATATGGAGATAGATGTGTTAATGCTCTTTGTTTGAAATTTAAACAGACTTGTAAGTGAGTGTTTGgattgtgtattttctgcattctTTATTTCATTCCTTAGTATACTCAAATGACAATGAACTGGACTGCTCTCTGCAATAAAGATAATCCATGGAA

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148168 lncRNA upstream 845 28170574 ~ 28171320 (+) True LOC110485682
TU148155 lncRNA upstream 31260 28140278 ~ 28140905 (+) True G128459
TU148134 lncRNA upstream 79167 28092418 ~ 28092998 (+) True G128438
TU148127 lncRNA upstream 87385 28084370 ~ 28084780 (+) True G128431
TU148124 lncRNA upstream 87509 28084370 ~ 28084656 (+) False G128431
TU148171 lncRNA downstream 477 28180682 ~ 28181001 (+) True G128474
TU148195 lncRNA downstream 67232 28247437 ~ 28250761 (+) True ddr1
TU148246 lncRNA downstream 83989 28264194 ~ 28265454 (+) True G128531
TU148261 lncRNA downstream 124279 28304484 ~ 28304997 (+) True G128546
TU148264 lncRNA downstream 131621 28311826 ~ 28382924 (+) True G128549
XM_036944270.1 mRNA upstream 842 28165160 ~ 28171323 (+) False LOC110485682
XM_036944288.1 mRNA downstream 14357 28194562 ~ 28247967 (+) False ddr1
XM_036944289.1 mRNA downstream 14357 28194562 ~ 28247967 (+) False ddr1
XM_036944293.1 mRNA downstream 14357 28194562 ~ 28247967 (+) False ddr1
XM_036944287.1 mRNA downstream 14358 28194563 ~ 28250766 (+) False ddr1
XM_021556890.2 mRNA downstream 90046 28270251 ~ 28280280 (+) True LOC110485735
TU148132 other upstream 82720 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 455002 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 868610 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 981572 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 1011520 27148176 ~ 27160645 (+) True LOC110485212
TU148197 other downstream 70637 28250842 ~ 28547915 (+) True G128490
TU148570 other downstream 751851 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 759694 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 1297412 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 1304428 29484633 ~ 29485130 (+) True G129155

Expression Profile