RNA id: XM_036944289.1


Basic Information

Item Value
RNA id XM_036944289.1
length 3419
RNA type mRNA
GC content 0.58
exon number 20
gene id ddr1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28194562 ~ 28250766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGCTGAGGTTGGAGCTCTGTGTGCGCAGCTGAAGCGAGGTTTCCGCGGTGAAGTAGACGAATAGAGAGCGACGAACAAACGGAACGGAGAAATGAACGGTTTTCTCGTCCCGTTCTCACTTTAATCTTGACAAATGTGAGCTAGACAACTTGACATTTTCATCTAAATTTTTGGACGTAACGTGTCGCCTATTTTGGAGTGCTTTGTTGTTTTCAGAGTTTAAAGAAAGGTCGAACGCGCCGCGCTACAACTGCAGGCAGCGTTGGATTATTCCCGTGGCGGAATATTTTGGTGGACAGTCACAGTCCGACACATTGCGCACGGGATATTCAAAACATTTAGAAGTTGCGATTGGTGTCTCATTTCGCCGTGACTTTTAGgtatgCCTGTGGTTGTCAGCGTGACTCCGGACAGGTAACCGGGTGTGTTGCTGGTGCCATGGCAACCCCAGAGCTGCGTCTGTTGCCTGTCATCGTGGTTACCATCGTCCTGGTGGCGTTGTCGGCTGCGGATGACCACGAGTGGCACTTTAAACCAGCTCAGTGTCGTTATGCCCTGGGGATGGAGGATGGCACCATCCCTGACTCTGACATCACTGCTTCCAGCGCCTGGTCAGACTCTACTGAGGCCAAACACGgcaggttgagtacaggagagggagatggtgCGTGGTGTCCTGCAGGAGCAGTGTTCCCCAGTGCTTCAGAGTACCTCCAGgTGGACCTGCGCTCGCTGCACTTCCTGGCTCTGGTGGGTACCCAGGGTCGCCATGCCGACGGGCACGGCCGGGAGTTTGCCCGCAGCTACCGGCTCCGTTACTCCCGAGACGGACGCACCTGGATCACCTGGAAGGACCGCTGGGGGCAGGAGGTGGTGTCTGGGAATGAGAACACCTATGATGTGGTTCTGAAGGACCTGGGTCCACCCATTGTTGCCCGTTATGTCCGCTTCTACCCCCTGGCAGACCGGGTCATGAGCGTCTGTCTACGAGTGGAGCTCTATGGCTGTCTGTGGAACGatgGCCTGTTGGTGTACACAGCTCCAGTGGGTCATGTGATGCACCTGTCTGGCTCACCTGTGTACCTCAACGATTCCACCTACGATGGCAGCGTAGAGTCAGGGGTTCAGTTCGGAGGCCTGGGCCAGCTGTTTGACGGTGTGTTAGGAGGGAATGACTTCACAGAGACCAAGGAGCTGAGAGTGTGGCCGGGGTATgactacctgggctggagcagagaGGCTCTGGGGCAGGGCAGCGTTGACATCGAGTTCCACTTCGAAAAGACACGCAGCTTCCACACCATGCAAGTCCACAGTAATAACCGTCACACCCAGGGTGTGAGGGTCTTCAGTAAGGTAGATTGTCAGTTTAAACCTGGCCTCTTACTCCCCTGGTCCTCGCCCCCCCTCTCCCTGGCTGTACCTCTAGAGGACCTGAAGGACCCCTCCTCACGCCCCATCTCCCTGCCCCTGGGGGGTCGCCCTGCCCAGATCTTACGTTGCCAGTTTGCCTTCGCAGACCGATGGATGCTCATCTCTGAGATCTCCTTCTACTCCGagccgTACGGGGAGGGTGTCGACCCCATGGACACGGGCTCTGCTCTTCCTGCTCCTCCGGTCTCCTCCGCtactcctcgtcctcctcctgtcttcccctcctccgtcaGCCCCGCCCTCAACCACAACTCCTCCAACTTCACTAGCGTTCCCTCAGGGGCCGACTTCGATGCTGTGACCCCAGGGGCGGGCCTTCCTGTCGCCAAGGACGACAGCAGCAACACAGCCATCCTGATTGGCTGCCTGGTGGGCATCATCCTGCTGCTATTGACTGTGATCGCTGTCATTCTGTGGAGGCAATACTGGAAGAAGATACTGGGCAAGGCCCAGGGCAGCCTGTCCAGTGACGAGCTGCGTGTCCATCTGTCCGTCCCCTCGGACAACGTGGtgatcaacaacacacacagctaCTCCAGCCGCTACCAGCGTATACACACTTTCCCTGACGACAGGGAGCGCTGCGACGGAGAGGGAGAGTACCAGGAGCCCAGCGCACTGCTCCGACCACTAGGACAAGACAGCACCGGACGAGACAGCACCGCCTTGCTGTTAAACAACCCAGCCTATGACCTCCtcctgtcagatcagaggcagcatgGCTCAGGCTCCTCGTGGCCCCTAACCGTCCCTATGGCCAGGGCCAGCTCCTCTCACCCTCAGGAGAAGAGCCTCAATAATGGGGCCCAGGgcTGTGGTATGGACTTGGAGAAGGGCTTGCCCCCCACGCAGGAGGAGCCTCCCCCGTACCCCGATGCCCCTCCCTACCCGGCCCTGTCTCCCCCCTTCCCCGCCAGCGTGCCCCACTATGCAGAGGCAGACATCGTTAGCCTGCAGGGCGTCAGTGGTAACAACACGTATGCAGTGCCAGCCCTGACCTCCACCAGCCCCACTGCAGCAGACTGCACCCCCCTGCCTGAACTGCCCCGACACTGTCTGGTTTTCAAGGAGAAACTGGGAGAAggacagtttggagagGTGCACCTGTGTGAGATAGAGAGCCCTCAGGAACTGCCTAACCTGGAGTTCCCTTTCAACGTGAGGAAAGGACGCCCTCTGCTGGTGGCTGTTAAGATACTGCGTCCTGACGCCTCCAAGAACGCCAGgAATGACTTCCTAAAGGAGGGGAAGATTCTGTCTCGTCTGAAGGACCCCAACATCATCCGTCtgttgggagtgtgtgtgagcaGCGACCCTCTCTGTATGGTCACAGAGTACATGGAGAGTGGGGACCTCAACCAGTACCTCTCACACAGAGTCCTGCTGGACAAGACCGGACCCACacacaacacccccaccatcagTTACCCTGCTCTGATCGCCATGGCCAGTCAGATAGCTTCAGGGATGAAGTTTCTGTCGTCTCTGAACTTCGTGCACCGTGACCTGGCCACAAGAAACTGCCTGGTGGGGGGTGAGAAGGGCGAGAGCGGGGGCGACCGGGGCGGGGAGAGACCCATCAAGATCGCCGACTTTGGGATGAGCAGAAACCTGTACGCTGGAGACTACTACCGCATCCAGGGGCGAGCCGTGCTGCCTATACGATGGATGGCCTGGGAGTGTATACTGATGggGAAGTTCACCACAGCCAGTGACGTGTGGGCGTTTGGTGTGACTCTGTGGGAGATGCTGAGTGTGTGTCAGGAGCAACCCTACTCCAACCTGACTGATGAACAGGTCATAGACAACGCCGGAGAGTTCTTCAGGGACCACGgaagacaggTGTATCTGAGCAGGCCAGATGTGTGTCCTCAGGGTCTCTATGACCTCATGCTGAGCTGCTGGAACCGGGACTGCAAGCTCCGCCCATCATTTGCCCACATTCACTCCTTCCTCACAGAGGATGCCATGAAcatggtgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148171 lncRNA upstream 13561 28180682 ~ 28181001 (+) True G128474
TU148168 lncRNA upstream 23242 28170574 ~ 28171320 (+) True LOC110485682
TU148155 lncRNA upstream 53657 28140278 ~ 28140905 (+) True G128459
TU148134 lncRNA upstream 101564 28092418 ~ 28092998 (+) True G128438
TU148127 lncRNA upstream 109782 28084370 ~ 28084780 (+) True G128431
TU148246 lncRNA downstream 16227 28264194 ~ 28265454 (+) True G128531
TU148261 lncRNA downstream 56517 28304484 ~ 28304997 (+) True G128546
TU148264 lncRNA downstream 63859 28311826 ~ 28382924 (+) True G128549
TU148276 lncRNA downstream 131815 28379782 ~ 28380102 (+) True G128561
TU148400 lncRNA downstream 320349 28568316 ~ 28600609 (+) True G128679
XM_021556776.2 mRNA upstream 14357 28171846 ~ 28180205 (+) False LOC110485672
XM_021556787.2 mRNA upstream 14357 28172165 ~ 28180205 (+) True LOC110485672
XM_021556831.2 mRNA upstream 23239 28165161 ~ 28171323 (+) False LOC110485682
XM_021556890.2 mRNA downstream 22284 28270251 ~ 28280280 (+) True LOC110485735
XM_036933644.1 mRNA downstream 33145 28281112 ~ 28296740 (+) True LOC110485723
XM_036944316.1 mRNA downstream 49235 28297202 ~ 28318817 (+) False si:dkeyp-77h1.4
XM_036944308.1 mRNA downstream 49504 28297471 ~ 28318817 (+) False si:dkeyp-77h1.4
XM_036944304.1 mRNA downstream 55741 28303708 ~ 28318817 (+) False si:dkeyp-77h1.4
TU148132 other upstream 105117 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 477399 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 891007 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1003969 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 1033917 27148176 ~ 27160645 (+) True LOC110485212
TU148197 other downstream 2875 28250842 ~ 28547915 (+) True G128490
TU148570 other downstream 684089 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 691932 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 1229650 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 1236666 29484633 ~ 29485130 (+) True G129155

Expression Profile