RNA id: XM_021556854.2


Basic Information

Item Value
RNA id XM_021556854.2
length 3498
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110485712
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28252625 ~ 28265466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCAGCATTTGCTCACCATTAAGTCACGTTAAGTAACATTTTGTTGCAATTCCAGTATTTGAGCCAGTCGTCAAGTCACGTAAATCGGAGTATATTGAAACCCTCTTGAGTGTACACGACGATTTATGAAAACATATCTTTAGGGAGAATCGATTGGTCCAAATCAAGATGTTCCACACATGTGGACCCAATGAAGCCATGGTGGTGTCTGGCTTTGGTCGTTCCCCTCCTCTAATGATCGCTGGAGGAAGAGTGTTTGTCCTCCCCTGTATTCAACAGATCCAGAGGATCACTCTGAACACCCTGACTCTGAATGTGAAGAGTGATAAGGTGTACACCCGTCATGGAGTGCCCATCTCTGTCACGGGCATCGCCCAGGTGAAGATCCAGGGTCAGAACAAGGAGATGCTGGCCACGGCCTGTCAGATGTTCATGGGAAAGTCTGAGGCTGAGGTCTCCAACATCGCCCTGGAAACACTGGAGGGGCACCAGAGGGCCATCATCGCCCATCTGACTGTTGAGGAGATCTACCAGGACCGTAAGAAGTTTTCTGAGCAGGTGTTCAAGGTGGCCTCCTCTGACCTGGTCAACATGGGCATCGGCGTGGTCAGCTACACGCTCAAAGACGTTCACGACGACCAGGATTACCTCAACTCCCTGGGTAAAGCTAGGACAGCTCAGGTGCAGAAAGATGCCAGGATCGGAGAGGCTCAGTACAAACGAGACGCGGTGATCCGTGAGGCCCAGGCCATGCAGGAGAAGGTGTCGGCCCAGTATCTGAATGAGATTGAGATGGCCAAAGCCCAGAGAGACTACGAGCTGAAGAAGGCCTCCTACGACTACGAGGTCAACACCAAGAAGGCAGAGTCTGAGATGGCCTATCAGCTGCAGGTGGCGAAGACGAAGCAGCGGATTGAGGAGGAGACGATGCAGGTGAAGGTGGTGGAGAGGTCTCAGCAGATCATGCTGCAGGAGCAGGAGATCACCCGCAAGGAGATGGAGCTGGAGGCCACGGTGAAGAAGCCTGCTGAGGCAGAGAGATACCGTCTGGAGAGACTGGCTGAGGCGGAACGTGCACAGCTCATCATGGAAGCTGAGGCAGAGGCAGAGTCCATCAGAATGAGGGGCGATGCTGAGGCGTTTGCTCTGGAGGCTAAGGGTCGTGCCGAGGCAGAGCAGATGGCTAAGAAGGCTGAGGCCTTTAAACAGTACGGGGAGGGAGCCATGGTGGACATGCTGCTGGAGAAACTACCACTGATAGCAGAGGAGATCAGCAGGCCCCTCTCCAAGGCCCAGAAGGTTACCATGGTTTCCAGCGGCGGCGGTGAGGTGGGCGCTGCCAAGCTGACCGGAGAGGTTCTGGACATCATGACCAGACTACCAGCTGCTGTGGAGAAACTCACTGGAATCAACATCTCACAGGTTGGCCTGTCCACCCGAATGGGCTGAGAATGGAGCCCAGTGACTGAGACAGCCTGCACCGTCAGACCAGGAACTCCATACTGCCTCCTTGTGCCTATAATTACTATTACCTAGTGTAGTTGTCTGTCTATGTCTGCATGCCTGTCTGCATGCCTGTGTTAGCACGGTAGTCTTTCTTAGAGCATGTGTCATTGGCACTCATTGGCACTGATCTGGAAACAAAGGATGGGTCAAAGCTGTATGTTGTTGGCCTACTGTGGGAGTTTGTGTCTCCTGGTCATTCATATCCCTGTTAGATCAGCTTGGATGAAGGAAAGGAAAGCACTTTGGGCTAGCATGACACAGCCTTAGTAGTTCTGGTAGCAACGAGCCTCTTTTCCCCATCCGTTattcagtgtgttttaatcacTGCTTCAAGCCtgcctttctgtctccctctattACAGGTCTGGGTCCATATAAACTGTTCCACTGTCACATAGTTGTGTTTTAGTTGTAATTCATAGAGTATTATTTCATTGGGATGTGGTTGAGAAAGGATGTTTTCATTCTCTTCATTCTTTGTTGTTGATAGGAAATAATCGTGTCAGTATGAGGTTTGTCAGTTgattgttttgtcgacatttgcaGTTATTCTATAAGGTAGTCTGTCTTGTTCTGAGCATGGTTGGCTAGCTAGTTGCTATCAATTGCTTTGCAAATGAAGAAGAAATGCTCTTTACTTTCACTGTGGACATTTCTTCATTTATTTTTTAGCTAATTGTAGTCCTGGTAGTCATGTTATTAAACATGTTCTACCTGCTTATGGATTCTAGTACCTCTTGTCTACCAATTTATGGACAAAGTGGTTTCCCATTATGTGCTCCCCTGACAGTAGATCCTAGATCAGTCTACTGATATCTCTAGCCCTCTAGAATGGCCAGTGCCTTGTGTTTTAAAGTCTTAATTAATCATATCAATACAAGCCATATTACAGTAGAAGCCAAGTTGCATGCAGATAATGCTGATTTGTGATCTTTTTGCCATGACCCTGCCATATGTGTGGGATGAAATCACAAACTATATGATGGGTTGGCACTAAACCTCTTCTCTCTGTTGGTACAATACTGGCATAGACACAATCACTGGAGTACTGAATTTGATGGTACCTAATCTAATTTTCCATAGCAAAAGAAAAACAAGGAACTACAGATTCTCTGTTACTAAAGTGTTGTTTATCCAACAGACAGGTTGTCATGTACACCATTATGGCTTAGTTCCAGTGTGTTTCTAAACCCTAGACTTATTAGACAGACAGGCCTTCGATCAGAGCTTCTACTGTGCTACAACTGTATAAAGGTGGAGATTTTCTGTGAAGTGattggaaggaaggaaggaaggaagtgggtgggaggagggagggagcggaCTGGGGTTTTCCTGCTGAAGACTAACCTCCGAGGTCTCTTTATCTAGGTCAGGTGTACTGTCAGTCACGTGGTGTCTGGTGGAtgtgctgtttgaggtgaagttATGTGTGTGGGAATGGGGAaactagcctgggtgccagtctgtttctgctctcttgtcAACTCCTTATCGAATTGTCAAGCCAAACACGTTTCCCTTAATGTCAATGGAACAGGCAAAAGCACAaccagacctgggaccaggctacagacacTACTATAGTGGAGTTCCATGTATGGTCCAGTGGGGTAGACAGGCACCTTCTGTAGACTGGAGTAGACCATATACATTTTAATCAGATGTGTTGATTAATCAGGAGCTATCCTTTTGTATTGTAATCTTATCATTAGACTGGTCTTATTTTTCCAGATTTTCTATGTGGTGCTGATCACATCCCTGTTTGATCCTTTTTGTAGTATAAGGTTTGTTAGGGACTGGTTCtataccatagaaatataatccttCTGTGTTCTATACCACCACTCAGGATTCTAGAAGCTACTACTCTCTAGCTGATTGTAATTTCCCAAAGCTTACATGCTCTCTGGCTGTCTATGCATTTTGTTACCGTCAAGTGCCTGACTAAGTTGAAAGATTCCCATTTTTCTCTCAACCTAAAGGCTAAA

Function

GO: NA

KEGG:

id description
K07192 FLOT; flotillin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149326 lncRNA downstream 20227 28230607 ~ 28232398 (-) True G129547
TU149282 lncRNA downstream 61082 28191336 ~ 28191543 (-) True G129507
TU149234 lncRNA downstream 81308 28170013 ~ 28171317 (-) True G129459
TU149239 lncRNA downstream 84231 28167944 ~ 28168394 (-) True G129464
TU149246 lncRNA downstream 159267 28093153 ~ 28093358 (-) True G129471
TU149352 lncRNA upstream 25065 28290531 ~ 28291251 (-) True G129572
TU149363 lncRNA upstream 44853 28310319 ~ 28310732 (-) True G129582
TU149370 lncRNA upstream 66229 28331695 ~ 28334476 (-) True G129588
TU149421 lncRNA upstream 170500 28435966 ~ 28450726 (-) False G129631
TU149422 lncRNA upstream 170500 28435966 ~ 28450726 (-) False G129631
XM_021556843.2 mRNA downstream 87770 28152489 ~ 28164855 (-) True LOC110485705
XM_036944152.1 mRNA downstream 102650 27933389 ~ 28149975 (-) False LOC110485663
XM_036944154.1 mRNA downstream 102651 27933389 ~ 28149974 (-) False LOC110485663
XM_036944163.1 mRNA downstream 102651 27933389 ~ 28149974 (-) False LOC110485663
XM_036944190.1 mRNA downstream 102651 27933389 ~ 28149974 (-) False LOC110485663
XM_036944341.1 mRNA upstream 52579 28318045 ~ 28328821 (-) False LOC110485793
XM_036944333.1 mRNA upstream 52579 28318045 ~ 28328849 (-) False LOC110485793
XM_036944327.1 mRNA upstream 52579 28318045 ~ 28329185 (-) False LOC110485793
XM_036944346.1 mRNA upstream 52579 28318045 ~ 28329189 (-) False LOC110485793
XM_036944347.1 mRNA upstream 52579 28318045 ~ 28329196 (-) True LOC110485793
TU149117 other downstream 102639 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 486093 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 974501 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 1589611 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 1690498 26561614 ~ 26562127 (-) True G127083
TU149362 other upstream 44853 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 211720 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 1603580 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 2624227 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 2631560 30897026 ~ 30899564 (-) True trnae-cuc

Expression Profile