RNA id: XM_021556890.2


Basic Information

Item Value
RNA id XM_021556890.2
length 1639
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC110485735
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28270251 ~ 28280280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCATTGTTTGTGCTGATGGCCAAAACCATTGTCCACACTAGTTCGGTTGGGTCTTCATGGTtcactgtctctttgtgtctcaaAATTTCTCCCAGTCAAGATGAGGGAAATCGTGCATATCCAAGCCGGCCAGTGCGGTAACCAGATTGGCGCCAAGTTCTGGGAGGTGATCAGCGATGAGCACGGGATTGACCCCACAGGCACCTACCATGGAGATGGCGACCTGCAGTTGGACAGAATCAGTGTCTACTACAATGAGGCAACAGGTGGTAAATATGTGCCCAGGGCCATCCTCGTGGACCTTGAGCCTGGCACAATGGATTCTGTGAGGTCTGGACCCTTTGGACAGATCTTCAGGCCAGACAACTTTGTGTTTGGCCAGAGCGGTGCTGGTAACAACTGGGCAAAGGGCCACTACACAGAGGGAGCAGAGCTGGTGGACTCTGTCCTGGACGTAGTGAGGAAGGAGTCAGAAAACTGTGACTGCCTGCAGGGTTTCCAGCTCACCCACTCCCTGGGTGGAGGCACGGGGTCGGGTATGGGCACCCTGCTCATCAGCAAGATCAGAGAGGAGTACCCTGACCGCATCATGAACACCTTCAGCGTGGTGCCCTCACCAAAAGTATCAGACACAGTGGTGGAGCCCTACAACGCCACCCTCTCCGTTCACCAGCTTGTGGAGAACACAGATGAGACGTTCTGCATCGACAACGAGGCCCTTTATGACATCTGCTTCCGCACGCTCAAACTGACCACGCCCACCTACGGTGACCTCAACCACCTGGTGTCAGCCACCATGAGCGGCGTCACCACCTGCCTGCGCTTCCCTGGCCAGCTCAACGCTGACCTTCGCAAACTGGCCGTCAACATGGTGCCCTTCCCCCGTCTGCACTTCTTCATGCCTGGCTTCGCCCCCCTCACCAGCAGGGGCAGCCAGCAGTACCGTGCCCTCACCGTGCCCGAGCTTACCCAGCAGGTGTTCGATGCAAAAAACATGATGGCAGCTTGCGACCCTCGTCACGGCCGCTACCTTACTGTGGCCGCAGTGTTCCGGGGCCAAATGTCCATGAAGGAGGTGGACGAGCAGATGCTTAATATCCAGAACAAGAACAGCAGCTACTTCGTGGAATGGATCCCCAACAATGTGAAGACCGCTGTCTGCGACATCCCACCCCGGGGTCTAAAGATGTCTGTCACCTTCATCGGCAACAGCACAGCCATCCAGGAGCTGTTCAAGCGTATCTCTGAGCAGTTCACTGCCATGTTCCGCCGCAAGGCCTTCTTGCACTGGTACACTGGAGAGGGCATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAACGACCTGGTGTCTGAGTACCAGCAGTACCAGGACGCCACCGCTGAGGAAGAGGGAGAGTTCGAGGAGGAGGCTGAAGACGATGACGCTTAAAGACAGAGCTTTGGAGATGAAGATTCTATTCAAAGGGCCAAATGAAGCTGTGAAACCACATGGGAAAAGTAACTTAGAAGCAAGAAAAAGTTAAAGGGGACCTAAAACCAATGttgagcttttttttttttatctaatgGGAAATATTATAGTAATGTAGACACACCCCTTGTGACTGCGAATAAATTAGTTAATGTTCA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148246 lncRNA upstream 4797 28264194 ~ 28265454 (+) True G128531
TU148195 lncRNA upstream 19490 28247437 ~ 28250761 (+) True ddr1
TU148171 lncRNA upstream 89250 28180682 ~ 28181001 (+) True G128474
TU148168 lncRNA upstream 98931 28170574 ~ 28171320 (+) True LOC110485682
TU148155 lncRNA upstream 129346 28140278 ~ 28140905 (+) True G128459
TU148261 lncRNA downstream 24204 28304484 ~ 28304997 (+) True G128546
TU148264 lncRNA downstream 31546 28311826 ~ 28382924 (+) True G128549
TU148276 lncRNA downstream 99502 28379782 ~ 28380102 (+) True G128561
TU148400 lncRNA downstream 288036 28568316 ~ 28600609 (+) True G128679
TU148373 lncRNA downstream 319007 28599287 ~ 28644026 (+) True G128652
XM_036944287.1 mRNA upstream 19485 28194563 ~ 28250766 (+) False ddr1
XM_036944288.1 mRNA upstream 22284 28194562 ~ 28247967 (+) False ddr1
XM_036944289.1 mRNA upstream 22284 28194562 ~ 28247967 (+) False ddr1
XM_036944293.1 mRNA upstream 22284 28194562 ~ 28247967 (+) False ddr1
XM_021556776.2 mRNA upstream 90046 28171846 ~ 28180205 (+) False LOC110485672
XM_036933644.1 mRNA downstream 832 28281112 ~ 28296740 (+) True LOC110485723
XM_036944316.1 mRNA downstream 16922 28297202 ~ 28318817 (+) False si:dkeyp-77h1.4
XM_036944308.1 mRNA downstream 17191 28297471 ~ 28318817 (+) False si:dkeyp-77h1.4
XM_036944304.1 mRNA downstream 23428 28303708 ~ 28318817 (+) False si:dkeyp-77h1.4
XM_036944321.1 mRNA downstream 23879 28304159 ~ 28318817 (+) True si:dkeyp-77h1.4
TU148132 other upstream 180806 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 553088 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 966696 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1079658 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 1109606 27148176 ~ 27160645 (+) True LOC110485212
TU148570 other downstream 651776 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 659619 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 1197337 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 1204353 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 1319746 29600026 ~ 29641096 (+) True G130308

Expression Profile