RNA id: XM_036933644.1



Basic Information


Item Value
RNA id XM_036933644.1
length 7730
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110485723
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28281112 ~ 28296740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTTTACCCAATCATCACAAATTAGACCATAACTGACAGCCGTTTCGATCAATAATATTATGGTCCCACCCACCGAAGGCGGTCAGATATTCTACCGGAAATGCACATTGTTTTTCGTTGTTCGAAAGGCATGCACGATTGAAGGGTGAATGGAGGCAACACAGCTGATCGATGACTCAATATTGGAAgagtcagaggaggaggaggatggagagaagcgAGGAGAGCCACTGGCCAAACTCAGGgtgttaaaaaataaacacatcaCAGAGACTGagtTGCCTCTCTACCAGGGAGAAAATGTGTTGGGTCGAAACCCAGACTCCTGCTCCCTGCCCCTTGTGGCCCGCTCCGTATCCAAGCAACACACCATCATCTCCATCTCAATGTTTCGCGGCAACCGTCGTCATGGCAACGTTGCCGCCATGGAGACAGAGGCTTTAGTGTGGGACCTGGGCAGCATGAACGGGACAAGGAAGGGCCGGACCAAACTGACCCCTCACGTCCGCTACGCTCTGACCGAGGGAGAGTGTGTGGTAATAGCTGACATCCCCTGCCAGTATGTCTCTGTGGACCAGAGGGGGGGACAGGGGCACATGCAGAACCCGACAAACGCACACTCTGGAAGGAGGTCAGGGCCAGACAGGAAGGCCCAGCTCAGAGGAAGCCCTAGCGGCCAAGGTCTGGGACGAGAGACTGGCACACCGAAGACTGAGGGTAGAGGAGTTAATGGAGAGATTGGGGCACCATCGTTGACTGAGCTGGGTGGAAAGGGTAAAAATCTGGCCAAACCCCTGTCATTTGAACAAACCCCCACACAGCCTGAGAGGACACTGGTGCCTGAGTCTGACTCCGATGGAGAGCAAGAGGGACGGAGAGACAAACGGGGAAAGTACTTTGtCTCTGATTCTGACTCGCACATGTCCAGTCCCACCTGTTCTACATTCCTCAGTCCTACAACCAACGTCATTCCAGAGAGTGAGGACGAGAGCCCCatcactccctcctcctctgctATAAACAGACCCAAGACAATAGTGAGCTTCAGTGAGGAGGAGAGCGACATGGATGGACCGAGACAGCAGCCCAGGAGAAGAAGAGCTCAAGTGATAGTGGACGACagcgaagaagaggaggaggggaaggaaggcaCAGAGGCACTAGGAGAGAAGGAACCTGGGAAAAGGACAAGAGGAAAGGAGGAAGTGTCAGTGGTGAACCAGGTCAGTCAAGCTGAGAGAGATGGACCAATGGTGTCTACAGAGGACACATTTAACATGGACAGTGACACAgacgtagagggagaggaggagatggggctgTCTGCACCTGTAAACGCTGTTAAGCCACCAGCCGCAACAGAACCTCCTACTACAGACTCTGACCCAGGCCAGATCCACATGGACAGTGATACTGATGTAGAGGAAGGGGATACTATGGACAGTGACTCTAAGTTAATGCTAACTGCTGCCGATGTGGAGAGGAAACCAGTAGATTCTGTCCCAGTGGTGCAGCCAACAGAGATACACCTGGACAGTGATACAGAtgtggatgatgatgatgatgttgttgtgtcAGACAGTGCTACCAATGTTACCTCCTTCGTATCCGATCCGGCTGAGAAACCAGACAATCCTGCCCCTGCAGTGCCACCCGTAGAATTCCACCTTGACACTGACACAGATGTGGAAGaggaggacacagacacacattccaAAACAGTTCCAGAATCAGATTCTAGTGGGATCAGAACAGGGATTGCTGGTCCCCAGGAGATCCTTTTGGACAGTGATACTGATGAAGAAGACAACCCGTTTACCCCTCCGGCCAGCAGTAGAACAGCGGAGCTCCTTAATCCACCCACCAGTGTAAGACCTGCAGCTGCTGCTCCTCTGGAGGTCAGGTCTGACAGCGACACAGACTTAGAGGAAGACGCCACACAGACCATGAACCTTCCTCCTCCTAATGTCACCACGGTAACGGAGGATGCGGTGTTCGCGTCGCGACAGGCCGTGCTTCCATCAcccacaataacaacaacaaccggTGCTGTTACCAAGACAATCGCTCTCAGGTCTCAGGACTCTGATGCTGACACAGATGCTGAGGAGGAGAGGTTGGAGCCCAAACCCCCCCGGTGTCGGCCCCCAGCAGGGATGGTCCCGGAGTCGGACCTCAATGAGCCCAGTGACTTCAGGATGGACAGTGATACGGAGAAGGATGGACCAGGGGAGGCAGGCCAGGGACAGACTGCATGTCGGCTCAGAGAGGGGGCAGCTGGCCCTGGGCTGCTCCCCCTGGGGGGTTCCCCTGGCCCTCATCAGAAGTGCTCCACCCCTTTGGCATCGTCAgtacaggaggagatggagactCAGGCCTTCTTCTGTCCCTCTGACCCCTTCAGACGCCCTGCTCTCCCTCCTGTGCTGAGGCCTACAGCAGCATTGTCCTGCTCTGCATCAGACAGCCAGGAGGACGATGACTTTGTGGTGGCCGAGACCCAGTCATTTGTGTTGGAGGCCCAGAACCAGGGCCATCAGAGCAGCCTTCCAGTGGAACCAACTCTGGATGCTACACAGCCCTATGGTTTGGAGCCTTCCTTGGGGGAGGAGCAGCCCAGCCGAGGCTCCTTCCAGCTGGGTCTGTCAGACAGCAGCCACCTCCACCTCCAGGCCAGGGACCAGGCCTCAGAGAGCACCCAGGCATTCAGCTTCCCAGGTGGGGATTCTGACCTGGAGGCCACCCAGACCTATGGATCTggagggaggagcgaggagcCTTGCCTTGGCCAGAGGTCTGCGGTGTTCAGGAGGAACAGGCAGGGGGATTCTGACCTGGAGGCCACACAGACCTATGGATCTAGAGGGGGGAGCGAGGAGCCTGGCCTGGGCCAGAGGTCTGCGGTGTTTGAGAGGAACAGGCAGGTGGACTTTGCCCTGGAGGCAACACAGGCTTATGCTGCCCAGCCTCGCAGTGACacagaggaggaagatgaagaggagacCCCCACCACGTCTAATGTTGCTACAACTGAAACCCTGCCCATGTCTGCCTATGAGGAAGAGgacagtgaggaggaggaagatttGGTTGGGGCCAAGCCCCTGACCCCAGTAAGGAGAGGGAGATCtggaggagcgagggagagagaggaagaggagcaggagaCCCAGACTGGTGAGGTGCTGACCAACCAATACCTCTCCACAGCTCAAACTCTGGACATGGTCCAGGAGAGTGATGATGAGGAAGAAGCCAAACCAGACTCGCCCAGAAGAAGACGGACCCAAAAACAGACAGTAGacgaggaagagagacagactgtcagCTCCTACCTCTCCACTGCTGAAACCCAGCCCATgtttactgctgctgctgctgaggatgatgatgataatgaggaGGAAGAACTCAAACCTCCATCACCCAGAAGGAGGGGAAGGTCCCAGAGAGGCagagtagaagaggaggagacacaaCCTAGTGAGTTCCTCACCAGCTCCCACATCTCCACCGCTGAAACTCAGCCTATGGGTACTTGTGacactgaggaagaggaggaggaggacaccaAAGCTAAAGGACAGgctcagagagagcgagggaaagagtcGGAGGCTGGGACAAGCGGTGtcagcagtagaggtagaagaggagctagaggaggagaggaggagagctctGAGACTCTGAAAACGCAGATGAGAGGAAAGGGGAAGGCTGTGAACACCGCGGGAggcggagggaggagagaggtgttgcctgaggaggaagagagtgagaaagaagaAGAGGCGGAGGTGGTTGAGCAAGGGAGGAGGGGAATAGGAAGAAAGAGTGTGAAAcaacagaaagagggagaaaaagaaagacttgaggaggaacggagagaggaggaagagggaataGAGAAGGAAAGACAAGAACAGGCTGAGAAGGAACGGTTGCAGAAGGAAAAAGTAGAATCAGAAAGGGTTATGAAGGaacaacaggacagagagaggatggaacaGGAACTTAAAGAACAAGATGAGAGATTAGAGAGTgtggaaagagaagaaacagaaaggatggagagggagaaaagagaacaagagaaaagagaagaaacagaaagGATGGAGAAAAGAGAACAGgagaaaagagaagaaacagaaaggatggagagggagaaaagagaacaggagaaaagagaagaaacaaaaagagaagaaacagaaaggatggagagggagaaaagagaagaaacagaaaggatggagagagagaaaagagaacagGAGAAAAGAGAGCAGCTTGAGAGGGAAAGGAAGGAACGAGAAGAGCAAGAAAGACTGCAGTGCGAGAGGACAAAAAGAGAAAAGAAGGAGAGATTAGAGGAAGAAAAAGAAAGAATAGAGCGGGAGAGGAAAGAAATAGAAGAGAGGAacagactggagagggaggaaaaaGAGAAGCAAGAACGATTGGAGAGAGAAAACAGGGAAAGGGAAGCGCTTGAGCgatcagagagagaaagggtggagaaagagaggatagagggagaacaAGCAGAAAAGCAAAGATTGGAGAAAGAAAAAATggaaagggaagagaagagaaaacaggagagagaactattgaagaagaaaaaggaagaggagagaaaccTGAAAGAAAaactggagagggagaagaaggaaagagaaaagagggaagcagaggagaaagaaaaggagatAAAAGAACGACAGGCGAAGGAACAAGGAGAAAAACAAGCCAAGAAAGACGACGAAAATGAGCTAAAAACATCCAGGAGAGGTCGCAGAGCAGCAACCAGGAGAACCGTCACGGTTCCACCCACAACGGAACCACAACCTGAACTTAATATTCTGTCCAGCACACCAGAACCAGTCCCAGCTAGTATAACTAGGTCTCGCTCCAACTCTTCCAACTCTGTCAGCTCTGAGAGATCCAGCATAGACACCCtggggagcagagggagagggggcaggaAGACCACCAGCACCACAGAGCCAGCCCCGGATCCAGACAACCCCACCCGCAACAGCACCAGGAAAAGGACGTTGGTCGGGACGGTTGTGGCTCCCCCTGCTGCTGTGGAGGTCACAGCGCAGGACATTCTCTCCAGCGAACAGTTTGTTGCCAGGAGAACCCGCTCCAGCTCCACCAACTCCCACAGCTCCACCAACTCGGAGGTCTCCACCTGTATCGTGGATAGCGTGAGCTCTCAGAgcaaagggaggggaggaggcagAAGGAGGAAGACTGGGACAGAGTCTCTCTCCCCCAGTAACAGGCAGAGTGAGCAGCCTCCAGCCCCCAAGCCCACAGCCAGAGGCAGGAGAAGCCAGAAGGTTGAGGATGATGGTCCACACCCTGTTATTAATGAGAAGGCTGATTCTCAGGAGGCTGGTGGTACCACTAGAGGGCAGAATAAAACTGCCAAAACCAATGAGCCAGACCCTGTAGTAGCAGATGAAGAAACCACTCCAGCCCAGGTAACAGAGGACTCCCCCGTTCCTAGAGGGAATGGAAGAGGCCGGGGCCGAGCCGGCCAGAAAGACAACACACCTGAATCCACCACTACAACAGCAGGAGGGGACACTCCAAGTGAAGAGGGACTGGAGTCTAAAACAggtgggagagggaaagggaggaagagggggcttggagaggaggaggaggaggagaacagtgGGTTCAAGGTTCCCCGGAGGAAAGCTAAGGTTCAGAGGGGAGGGAGATGCAGGGCagcagaggagaaaggagagaaagaggagaaacctGCATCCACTCCAGCAAAGAGAGGCAGAGCCTCCACTGCACAGGTGAAAAAGAtagcagaggaggagaagagtatGGCGGGACAGAGTGagaagatggaagaggaagaggcTGGTGCTGTGCAGAGGAAAGTCCGAGGCAGGCAGTCGACGGTTCAGATAAAGAAGAAAGAGGAACCTGTTTTGGACTCTGTgGTGCCACAGACCCCTACAGGTAAGGGCAGAGGTAAACGTAGGGCCCCTGTGGAATCATCACCACTAGCCAGGACCCCTcgctcctcctctgcctctcccctgtcctccctctcctcccctgggACACTGGGCCCAGCGAGGGCCGCCACGCATTCCTACAAGGTGTTGTTTACAGGAGTGGTGGATGAGGAGGGGGGGAAGGTGGTGTCTTGTCTGGGGGGCAGCCTGGCGAAGGGCGTGGCTGACATGACCCACCTGGTGACTGACCGGGTCCGACGCACCGTCAAGTTCCTGTGTGCTGTGGCCCGCGGCATGCCCGTCGTCACCACCGATTGGCTGGATAAGtGTGGTAAGGTGGGTCATTTCCTACCTACTGACAGGTACCTGGTGAAGGATAGGGAGCAGGAGAACAAGTTCAGCTTCTGTCTGGAGGAATCACTGAGGACCGCCAGCACCCAACCTCTactacagggttATGAGGTCCATGTTACCAGGTCAGTGTTGCCAGAGCCAGCCCAGATGAAGGACATCATCATCTGTAGTGGAGCTCGCTACCTCTCTACGATGCCCTCCACTCAGAAGGCCCAGGCCCGGACCCTAGTGATATCGTGTGGGGAGGACTGGTCTCTCTGTGCTCctgctctctctgcttctctcccagTCCTCAGTGCTGAGTTCCTGCTAACTGGTATATTACAGCAGAGAGTGGACCTGGTAACCCATGTCCTCTCAGCCCCCAAACCCAGGGCCCAGCCAGGAGCCAAAGGCCAggccagggggaggaagagaatgTAACAGACCAAACTCACCTGGGTGGTATTCATTAATTCATACTGTAGCAAAACCATAtgcaacagaaaacaaacactagtgtttcttattggacaagttcaggtaatCCCTCCCTGTTTTAGTCTGTTTTCTACCGTTAGGTGAATATGACCCTGGCATAGCATGCAGCACCCACCTCCACCTGTATAGAGAACAGTAGCAGGACCAGGCCACAGAGGAGTGgtaactacagtactactaccctGGAGGGGCTGGAGACCATTAGACACCTGAGAGAGGGGAGGATTCGGATGTACAAGAGACAgtggcagcatcccaaatgggaccctattgcTTACTTTTGACAAAGAGccctgcactatgtagggaatagggtgctatttgggacgcagacatgAAAGGCTGGTGAGAGGAGACATCCACCTGTATGACCAACTAGACTAGATAGTTGAGAATGTATTCACTCTGATAAGAAGACAAACAAACCCAAGAGATGGAAAACTATTTTTATGTTTATGAGGGTAGAGAGAAAATACATGCAGAGAAATGCTCTGAACATATTTGTGTTCATAAAAAATGATATAAATATGAGTTAACATAGAGAAGACGGAGTAATAGATGAGATAATTTACTGCCTATCCCAGTCATTTATTTGATGTCTCTTCCTCTTTTCCTGTCTTTCCTCCCTCTGCTGATCCTTTATCTATACTGATTAAAAGCCATCCTCGCCTTTTGTATAAAgataacaaatatatatatattagtgccTATTTTACGAGGATAATGTTGAATATACCAGGTGTCTGTCTTCACCAGCTGTGATTGCTGAAGGGACATGTCTTCAATCTTAGAAAAAGGACCGAACTGATTGTTTTAATGCTGCTCGTCCATCTACATCTTTGTATGTAGGAGTTAAATGTGTCTTTATTTACCGACCAATAAACCTTTCATACCGAA

Function


GO: NA

KEGG:

id description
K20780 MDC1; mediator of DNA damage checkpoint protein 1

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU148246 lncRNA upstream 15658 28264194 ~ 28265454 (+) True G128531
TU148195 lncRNA upstream 30351 28247437 ~ 28250761 (+) True ddr1
TU148171 lncRNA upstream 100111 28180682 ~ 28181001 (+) True G128474
TU148168 lncRNA upstream 109792 28170574 ~ 28171320 (+) True LOC110485682
TU148155 lncRNA upstream 140207 28140278 ~ 28140905 (+) True G128459
TU148261 lncRNA downstream 7744 28304484 ~ 28304997 (+) True G128546
TU148264 lncRNA downstream 15086 28311826 ~ 28382924 (+) True G128549
TU148276 lncRNA downstream 83042 28379782 ~ 28380102 (+) True G128561
TU148400 lncRNA downstream 271576 28568316 ~ 28600609 (+) True G128679
TU148373 lncRNA downstream 302547 28599287 ~ 28644026 (+) True G128652
XM_021556890.2 mRNA upstream 832 28270251 ~ 28280280 (+) True LOC110485735
XM_036944287.1 mRNA upstream 30346 28194563 ~ 28250766 (+) False ddr1
XM_036944288.1 mRNA upstream 33145 28194562 ~ 28247967 (+) False ddr1
XM_036944289.1 mRNA upstream 33145 28194562 ~ 28247967 (+) False ddr1
XM_036944293.1 mRNA upstream 33145 28194562 ~ 28247967 (+) False ddr1
XM_036944316.1 mRNA downstream 462 28297202 ~ 28318817 (+) False si:dkeyp-77h1.4
XM_036944308.1 mRNA downstream 731 28297471 ~ 28318817 (+) False si:dkeyp-77h1.4
XM_036944304.1 mRNA downstream 6968 28303708 ~ 28318817 (+) False si:dkeyp-77h1.4
XM_036944321.1 mRNA downstream 7419 28304159 ~ 28318817 (+) True si:dkeyp-77h1.4
XM_021556935.2 mRNA downstream 34993 28331733 ~ 28334614 (+) False ino80e
TU148132 other upstream 191667 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 563949 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 977557 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1090519 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 1120467 27148176 ~ 27160645 (+) True LOC110485212
TU148570 other downstream 635316 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 643159 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 1180877 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 1187893 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 1303286 29600026 ~ 29641096 (+) True G130308

Expression Profile


XM_036933644.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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XM_036933644.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036933644.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.